Wall clock time and date at job start Sat Apr 11 2020 05:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00124 * 2 1 4 4 C 1.52997 * 109.47292 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47284 * 64.43402 * 4 3 2 6 6 C 1.46902 * 110.99742 * 199.82706 * 5 4 3 7 7 C 1.46901 * 110.99896 * 75.87480 * 5 4 3 8 8 C 1.52998 * 109.46752 * 190.00040 * 7 5 4 9 9 C 1.53004 * 109.47114 * 180.02562 * 8 7 5 10 10 N 1.46496 * 109.47315 * 179.97438 * 9 8 7 11 11 C 1.34773 * 119.99804 * 179.97438 * 10 9 8 12 12 O 1.21592 * 120.00660 * 0.02562 * 11 10 9 13 13 N 1.34786 * 119.99814 * 180.02562 * 11 10 9 14 14 C 1.40197 * 119.99957 * 179.97438 * 13 11 10 15 15 C 1.40403 * 125.96934 * 0.02562 * 14 13 11 16 16 C 1.35245 * 107.86433 * 179.71200 * 15 14 13 17 17 N 1.34966 * 107.86019 * 0.42706 * 16 15 14 18 18 C 1.46495 * 125.98348 * 179.83864 * 17 16 15 19 19 C 1.50697 * 109.47755 * 124.71139 * 18 17 16 20 20 H 1.08002 * 119.99991 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00528 * 180.02562 * 19 18 17 22 22 N 1.31513 * 119.99342 * 359.72482 * 21 19 18 23 23 Si 1.86794 * 120.00186 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47172 * 269.72407 * 23 21 19 25 25 H 1.48503 * 109.47321 * 29.72232 * 23 21 19 26 26 H 1.48504 * 109.47212 * 149.72224 * 23 21 19 27 27 N 1.31203 * 125.97231 * 179.97438 * 14 13 11 28 28 H 1.08998 * 109.46855 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47533 * 300.00222 * 1 2 3 30 30 H 1.09004 * 109.46562 * 60.00429 * 1 2 3 31 31 H 1.09002 * 109.47367 * 59.99374 * 3 2 1 32 32 H 1.09007 * 109.46854 * 300.00001 * 3 2 1 33 33 H 1.08998 * 109.46774 * 304.43004 * 4 3 2 34 34 H 1.08999 * 109.47132 * 184.43934 * 4 3 2 35 35 H 1.08998 * 109.47517 * 290.80506 * 6 5 4 36 36 H 1.09005 * 109.47255 * 50.80895 * 6 5 4 37 37 H 1.09002 * 109.46876 * 170.80091 * 6 5 4 38 38 H 1.08995 * 109.47011 * 69.99983 * 7 5 4 39 39 H 1.08991 * 109.47011 * 309.99776 * 7 5 4 40 40 H 1.08995 * 109.47410 * 60.00187 * 8 7 5 41 41 H 1.09001 * 109.47227 * 299.99590 * 8 7 5 42 42 H 1.09005 * 109.46989 * 59.99658 * 9 8 7 43 43 H 1.09001 * 109.47006 * 300.00331 * 9 8 7 44 44 H 0.96994 * 120.00098 * 0.02562 * 10 9 8 45 45 H 0.96995 * 119.99515 * 0.02562 * 13 11 10 46 46 H 1.08000 * 126.07153 * 0.02562 * 15 14 13 47 47 H 1.07999 * 126.07370 * 180.25646 * 16 15 14 48 48 H 1.09005 * 109.47058 * 4.71111 * 18 17 16 49 49 H 1.09000 * 109.47447 * 244.71759 * 18 17 16 50 50 H 0.96995 * 120.00646 * 0.27180 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9759 0.5504 -1.2503 6 6 5.3281 -0.0063 -1.1099 7 6 3.9099 1.4962 -2.3724 8 6 4.1323 0.7447 -3.6864 9 6 4.0641 1.7298 -4.8552 10 7 4.2777 1.0103 -6.1133 11 6 4.2601 1.6791 -7.2833 12 8 4.0674 2.8796 -7.2947 13 7 4.4560 1.0171 -8.4409 14 6 4.4372 1.7127 -9.6580 15 6 4.2270 3.0918 -9.8165 16 6 4.2898 3.3718 -11.1382 17 7 4.5208 2.2160 -11.7957 18 6 4.6572 2.0634 -13.2463 19 6 5.9710 1.3951 -13.5599 20 1 6.6377 1.1120 -12.7587 21 6 6.3222 1.1452 -14.8695 22 7 5.5080 1.4851 -15.8448 23 14 7.9504 0.3163 -15.2581 24 1 9.0010 1.3498 -15.4404 25 1 8.3287 -0.5817 -14.1374 26 1 7.8161 -0.4785 -16.5054 27 7 4.6138 1.1888 -10.8479 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8521 0.5766 0.8468 34 1 3.9786 2.1773 0.0789 35 1 6.0485 0.8068 -1.0212 36 1 5.3732 -0.6307 -0.2175 37 1 5.5659 -0.6084 -1.9868 38 1 4.6822 2.2559 -2.2531 39 1 2.9301 1.9733 -2.3881 40 1 3.3599 -0.0151 -3.8057 41 1 5.1121 0.2674 -3.6707 42 1 4.8367 2.4893 -4.7357 43 1 3.0845 2.2074 -4.8711 44 1 4.4310 0.0526 -6.1044 45 1 4.6094 0.0594 -8.4319 46 1 4.0519 3.8036 -9.0235 47 1 4.1728 4.3467 -11.5879 48 1 4.6268 3.0449 -13.7194 49 1 3.8388 1.4517 -13.6259 50 1 4.6623 1.9151 -15.6431 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173378055.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:11 Heat of formation + Delta-G solvation = -13.498877 kcal Electronic energy + Delta-G solvation = -28125.136266 eV Core-core repulsion = 23995.766970 eV Total energy + Delta-G solvation = -4129.369295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.29231 -40.93852 -39.47101 -38.05733 -36.65813 -36.09141 -35.51390 -33.13949 -32.21574 -31.00886 -30.71169 -28.27964 -27.48077 -27.03031 -25.34815 -24.84593 -23.24707 -22.65071 -22.15209 -21.64091 -21.15528 -19.27223 -19.11517 -18.29957 -17.51527 -17.29652 -17.12044 -16.93747 -16.45815 -16.23491 -16.13336 -15.80437 -15.59987 -15.56223 -15.31382 -15.08457 -14.92779 -14.66572 -14.17096 -13.90988 -13.69865 -13.49128 -13.38799 -13.21531 -13.06292 -12.78372 -12.66125 -12.59442 -12.34246 -12.16200 -12.04608 -11.97182 -11.91511 -11.68110 -11.49925 -11.17642 -10.99899 -10.68185 -10.51200 -10.22583 -9.79942 -9.22378 -9.13999 -8.76264 -6.55186 0.99254 1.08348 1.51094 1.58925 1.64713 1.78840 2.03339 2.36518 2.48993 2.85779 3.00507 3.01980 3.18316 3.87072 3.91699 4.02095 4.10416 4.15125 4.21001 4.29197 4.43452 4.49832 4.50143 4.56544 4.57446 4.61405 4.63622 4.68534 4.70253 4.78271 4.79460 4.82649 4.86894 4.90477 4.93567 5.06593 5.09905 5.19008 5.22406 5.46630 5.55730 5.80897 5.86176 5.96334 6.08536 6.13266 6.28353 6.38373 6.42814 6.69545 7.08632 7.20748 7.40224 8.59017 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.001490 C = 0.001452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.611703 B =18793.622201 C =19273.034342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.062 3.938 4 C 0.054 3.946 5 N -0.548 5.548 6 C 0.023 3.977 7 C 0.058 3.942 8 C -0.113 4.113 9 C 0.143 3.857 10 N -0.721 5.721 11 C 0.711 3.289 12 O -0.602 6.602 13 N -0.637 5.637 14 C 0.287 3.713 15 C -0.290 4.290 16 C 0.056 3.944 17 N -0.345 5.345 18 C 0.259 3.741 19 C -0.622 4.622 20 H 0.045 0.955 21 C -0.019 4.019 22 N -0.924 5.924 23 Si 1.123 2.877 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.275 1.275 27 N -0.348 5.348 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.030 0.970 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.414 0.586 45 H 0.421 0.579 46 H 0.169 0.831 47 H 0.202 0.798 48 H 0.054 0.946 49 H 0.017 0.983 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.364 -0.995 35.007 35.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C -0.014 4.014 4 C -0.074 4.074 5 N -0.272 5.272 6 C -0.125 4.125 7 C -0.070 4.070 8 C -0.151 4.151 9 C 0.019 3.981 10 N -0.378 5.378 11 C 0.410 3.590 12 O -0.481 6.481 13 N -0.289 5.289 14 C 0.031 3.969 15 C -0.322 4.322 16 C -0.092 4.092 17 N -0.126 5.126 18 C 0.140 3.860 19 C -0.660 4.660 20 H 0.063 0.937 21 C -0.218 4.218 22 N -0.560 5.560 23 Si 0.944 3.056 24 H -0.194 1.194 25 H -0.206 1.206 26 H -0.200 1.200 27 N -0.179 5.179 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.251 0.749 45 H 0.259 0.741 46 H 0.186 0.814 47 H 0.218 0.782 48 H 0.072 0.928 49 H 0.034 0.966 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.598 -2.084 32.957 33.341 hybrid contribution -0.918 1.330 1.526 2.223 sum -5.516 -0.754 34.483 34.930 Atomic orbital electron populations 1.22837 0.80508 1.03276 1.00338 1.87935 1.20309 1.28460 1.95430 1.22669 0.93548 0.84695 1.00537 1.22194 0.93818 0.98966 0.92394 1.61883 1.25631 1.35586 1.04144 1.22461 0.87737 0.99289 1.03023 1.22032 1.01726 0.93341 0.89918 1.21630 1.03790 0.97998 0.91715 1.21216 1.01564 0.94786 0.80564 1.44884 1.76887 1.12374 1.03661 1.15803 0.77943 0.84884 0.80365 1.90833 1.57007 1.14055 1.86158 1.41402 1.74455 1.11819 1.01203 1.19098 1.00193 0.91760 0.85833 1.21711 1.19284 0.94995 0.96165 1.23169 1.00297 0.93008 0.92770 1.48545 1.53081 1.04146 1.06868 1.19417 0.97409 0.98078 0.71089 1.22322 1.04183 1.44104 0.95399 0.93686 1.27280 1.07035 0.95828 0.91687 1.70911 1.11045 1.39282 1.34728 0.82835 0.70687 0.76122 0.75963 1.19359 1.20574 1.20042 1.77260 1.30368 1.14182 0.96099 0.89289 0.93281 0.94000 0.91772 0.93271 0.89957 0.91749 0.95185 0.91227 0.90828 0.93970 0.90515 0.90269 0.90220 0.92010 0.91985 0.74886 0.74143 0.81383 0.78162 0.92806 0.96566 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.40 -6.28 10.64 -148.98 -1.59 -7.87 16 3 C 0.06 0.68 6.13 71.98 0.44 1.12 16 4 C 0.05 0.54 5.39 86.30 0.47 1.00 16 5 N -0.55 -6.52 4.63 -922.48 -4.27 -10.79 16 6 C 0.02 0.22 9.23 127.69 1.18 1.40 16 7 C 0.06 0.62 4.79 86.30 0.41 1.03 16 8 C -0.11 -1.19 5.25 30.59 0.16 -1.03 16 9 C 0.14 2.19 5.67 86.38 0.49 2.68 16 10 N -0.72 -13.03 5.56 -478.52 -2.66 -15.69 16 11 C 0.71 20.23 8.53 179.05 1.53 21.75 16 12 O -0.60 -21.45 13.47 -4.00 -0.05 -21.51 16 13 N -0.64 -19.52 5.46 -321.22 -1.75 -21.27 16 14 C 0.29 11.71 8.11 133.31 1.08 12.80 16 15 C -0.29 -11.65 9.61 22.11 0.21 -11.43 16 16 C 0.06 2.24 11.44 83.52 0.96 3.19 16 17 N -0.34 -16.48 3.67 -351.85 -1.29 -17.77 16 18 C 0.26 13.51 5.57 85.63 0.48 13.99 16 19 C -0.62 -35.76 9.24 25.60 0.24 -35.53 16 20 H 0.04 2.71 7.81 -2.91 -0.02 2.69 16 21 C -0.02 -1.05 5.46 84.66 0.46 -0.59 16 22 N -0.92 -54.23 13.65 21.45 0.29 -53.94 16 23 Si 1.12 50.02 29.90 68.60 2.05 52.08 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 27 N -0.35 -16.54 12.42 -54.44 -0.68 -17.22 16 28 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.04 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.52 6.68 -2.38 -0.02 0.51 16 33 H 0.08 0.82 7.74 -2.39 -0.02 0.80 16 34 H 0.06 0.47 8.00 -2.39 -0.02 0.45 16 35 H 0.03 0.26 8.07 -2.39 -0.02 0.25 16 36 H 0.07 0.65 7.85 -2.38 -0.02 0.63 16 37 H 0.07 0.68 6.73 -2.39 -0.02 0.67 16 38 H 0.04 0.42 8.07 -2.39 -0.02 0.40 16 39 H 0.08 0.83 6.58 -2.39 -0.02 0.81 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 41 H 0.08 0.74 6.67 -2.39 -0.02 0.72 16 42 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.41 4.92 8.49 -92.71 -0.79 4.13 16 45 H 0.42 10.23 8.84 -92.71 -0.82 9.41 16 46 H 0.17 6.56 5.91 -2.91 -0.02 6.55 16 47 H 0.20 6.34 8.06 -2.91 -0.02 6.32 16 48 H 0.05 2.68 7.94 -2.38 -0.02 2.66 16 49 H 0.02 0.90 8.00 -2.39 -0.02 0.88 16 50 H 0.26 15.17 7.22 -92.71 -0.67 14.50 16 Total: -1.00 -76.59 411.79 -1.15 -77.73 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: -0.55 Total: 24.34 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 9.35 Total: 11.91 kcal Atomic # 7 Polarization: -126.32 SS G_CDS: -10.36 Total: -136.68 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -1.64 Total: -29.38 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.05 Total: 52.08 kcal Total: -76.59 -1.15 -77.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173378055.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.236 kcal (2) G-P(sol) polarization free energy of solvation -76.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds