Wall clock time and date at job start Sat Apr 11 2020 05:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46938 * 2 1 4 4 C 1.53003 * 109.47482 * 239.99793 * 2 1 3 5 5 O 1.45203 * 109.47063 * 119.99472 * 2 1 3 6 6 C 1.34231 * 116.99732 * 60.00551 * 5 2 1 7 7 O 1.20823 * 120.00059 * 359.97438 * 6 5 2 8 8 C 1.50701 * 120.00006 * 179.97438 * 6 5 2 9 9 C 1.56246 * 112.55353 * 298.44094 * 8 6 5 10 10 C 1.54839 * 104.67017 * 214.63033 * 9 8 6 11 11 C 1.54843 * 102.73878 * 37.91991 * 10 9 8 12 12 C 1.54174 * 104.32225 * 321.82035 * 11 10 9 13 13 H 1.09000 * 111.78958 * 147.06439 * 12 11 10 14 14 C 1.54315 * 108.86594 * 271.10215 * 12 11 10 15 15 N 1.48533 * 104.76895 * 90.48908 * 14 12 11 16 16 C 1.46901 * 111.00077 * 159.25277 * 15 14 12 17 17 C 1.52996 * 109.47022 * 69.87134 * 16 15 14 18 18 O 1.42900 * 109.47091 * 65.00334 * 17 16 15 19 19 C 1.42899 * 114.00218 * 179.97438 * 18 17 16 20 20 C 1.50702 * 109.47071 * 180.02562 * 19 18 17 21 21 H 1.08003 * 120.00325 * 0.02562 * 20 19 18 22 22 C 1.37884 * 120.00019 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99974 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00212 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47443 * 89.99343 * 24 22 20 26 26 H 1.48492 * 109.47181 * 210.00020 * 24 22 20 27 27 H 1.48507 * 109.47007 * 329.99876 * 24 22 20 28 28 C 1.48815 * 104.06839 * 39.63275 * 15 14 12 29 29 H 1.08997 * 109.47219 * 300.00331 * 1 2 3 30 30 H 1.09000 * 109.47331 * 60.00358 * 1 2 3 31 31 H 1.08995 * 109.47356 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46867 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.46999 * 299.99528 * 3 2 1 34 34 H 1.08997 * 109.47436 * 59.99802 * 3 2 1 35 35 H 1.08995 * 109.46821 * 300.00323 * 4 2 1 36 36 H 1.09007 * 109.46810 * 60.00019 * 4 2 1 37 37 H 1.08999 * 109.46792 * 179.97438 * 4 2 1 38 38 H 1.09004 * 110.51881 * 95.69346 * 9 8 6 39 39 H 1.09004 * 110.17396 * 333.39968 * 9 8 6 40 40 H 1.09002 * 110.75764 * 279.60495 * 10 9 8 41 41 H 1.09008 * 110.91509 * 156.30308 * 10 9 8 42 42 H 1.09000 * 110.46191 * 203.10925 * 11 10 9 43 43 H 1.09000 * 110.46536 * 80.52860 * 11 10 9 44 44 H 1.09002 * 110.39713 * 209.34505 * 14 12 11 45 45 H 1.09004 * 110.40010 * 331.63326 * 14 12 11 46 46 H 1.09000 * 109.47441 * 189.87258 * 16 15 14 47 47 H 1.09007 * 109.46770 * 309.87579 * 16 15 14 48 48 H 1.09006 * 109.47167 * 184.99847 * 17 16 15 49 49 H 1.09002 * 109.47691 * 305.00393 * 17 16 15 50 50 H 1.09005 * 109.47136 * 299.99687 * 19 18 17 51 51 H 1.08996 * 109.47035 * 60.00101 * 19 18 17 52 52 H 0.96990 * 120.00278 * 180.02562 * 23 22 20 53 53 H 1.09003 * 110.38035 * 201.57782 * 28 15 14 54 54 H 1.09003 * 110.48229 * 79.25230 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9683 1.3380 7 8 0.9560 -2.5025 0.5084 8 6 2.1182 -2.7436 2.5437 9 6 3.6744 -2.8632 2.6158 10 6 3.9323 -4.2621 3.2276 11 6 2.8254 -5.1282 2.5778 12 6 1.5944 -4.2012 2.5303 13 1 0.9709 -4.4010 1.6588 14 6 0.8048 -4.3523 3.8475 15 7 1.3773 -3.3228 4.7523 16 6 0.4440 -3.0003 5.8399 17 6 0.3444 -4.1904 6.7963 18 8 1.6076 -4.3981 7.4313 19 6 1.6233 -5.4922 8.3504 20 6 2.9965 -5.6181 8.9581 21 1 3.7790 -4.9311 8.6715 22 6 3.2540 -6.6105 9.8801 23 7 2.3011 -7.4468 10.2295 24 14 4.9560 -6.7662 10.6340 25 1 5.0276 -5.9442 11.8687 26 1 5.2204 -8.1883 10.9700 27 1 5.9732 -6.2897 9.6626 28 6 1.5977 -2.1464 3.8681 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2493 38 1 4.0882 -2.0847 3.2569 39 1 4.1031 -2.7997 1.6156 40 1 3.8171 -4.2370 4.3112 41 1 4.9213 -4.6301 2.9541 42 1 2.6186 -6.0052 3.1912 43 1 3.1169 -5.4265 1.5708 44 1 -0.2552 -4.1628 3.6788 45 1 0.9501 -5.3485 4.2654 46 1 0.8064 -2.1273 6.3828 47 1 -0.5401 -2.7861 5.4227 48 1 -0.4133 -3.9862 7.5528 49 1 0.0677 -5.0840 6.2368 50 1 0.8922 -5.3146 9.1391 51 1 1.3729 -6.4129 7.8235 52 1 2.4821 -8.1446 10.8784 53 1 2.3423 -1.4792 4.3025 54 1 0.6617 -1.6130 3.7024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339157604.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:19 Heat of formation + Delta-G solvation = -155.466807 kcal Electronic energy + Delta-G solvation = -31508.448281 eV Core-core repulsion = 27444.170387 eV Total energy + Delta-G solvation = -4064.277894 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.224 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.38893 -40.75986 -38.62736 -37.89205 -36.26134 -35.09635 -34.82771 -32.04979 -31.54737 -29.68715 -28.41142 -28.38541 -28.28700 -26.60892 -24.73416 -24.37669 -23.84807 -21.93965 -21.71778 -20.81958 -19.86968 -18.65854 -18.31921 -17.61993 -17.45100 -17.02222 -16.86849 -16.71332 -16.30281 -15.80575 -15.55761 -15.32840 -15.22542 -14.91094 -14.75233 -14.60912 -14.43149 -13.90796 -13.59943 -13.51438 -13.40325 -13.23187 -13.08299 -12.95946 -12.91738 -12.87371 -12.78112 -12.71771 -12.50997 -12.36891 -12.26004 -12.14687 -12.00267 -11.87576 -11.76403 -11.72830 -11.54254 -11.41075 -11.34084 -11.22189 -10.91735 -10.82110 -10.15261 -9.38114 -8.28994 -6.40349 1.09202 1.41504 1.44331 1.56584 1.58952 2.37274 2.92292 3.04860 3.11514 3.30834 3.36154 3.52598 3.69506 3.78489 3.80002 3.94978 4.06601 4.14142 4.21451 4.24271 4.34554 4.40138 4.47638 4.53454 4.54232 4.58780 4.60449 4.62178 4.73964 4.74751 4.80477 4.82251 4.84034 4.86057 4.86859 4.91893 4.96767 4.98533 5.01344 5.08397 5.11478 5.22262 5.22965 5.24164 5.27935 5.31360 5.50709 5.57922 5.59319 5.83621 5.99060 6.03136 6.60119 6.75931 6.89412 7.31677 8.83454 Molecular weight = 339.22amu Principal moments of inertia in cm(-1) A = 0.020231 B = 0.002427 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.677357 B =11534.047242 C =11851.596600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.104 3.896 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.349 6.349 6 C 0.492 3.508 7 O -0.517 6.517 8 C -0.062 4.062 9 C -0.088 4.088 10 C -0.119 4.119 11 C -0.110 4.110 12 C -0.078 4.078 13 H 0.096 0.904 14 C 0.037 3.963 15 N -0.504 5.504 16 C 0.058 3.942 17 C 0.062 3.938 18 O -0.391 6.391 19 C 0.211 3.789 20 C -0.540 4.540 21 H 0.061 0.939 22 C 0.005 3.995 23 N -0.933 5.933 24 Si 0.981 3.019 25 H -0.268 1.268 26 H -0.275 1.275 27 H -0.264 1.264 28 C 0.058 3.942 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.048 0.952 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.046 0.954 49 H 0.035 0.965 50 H -0.018 1.018 51 H -0.019 1.019 52 H 0.270 0.730 53 H 0.099 0.901 54 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.704 16.369 -23.869 28.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.068 3.932 3 C -0.194 4.194 4 C -0.237 4.237 5 O -0.266 6.266 6 C 0.335 3.665 7 O -0.406 6.406 8 C -0.064 4.064 9 C -0.125 4.125 10 C -0.156 4.156 11 C -0.148 4.148 12 C -0.097 4.097 13 H 0.114 0.886 14 C -0.091 4.091 15 N -0.228 5.228 16 C -0.070 4.070 17 C -0.016 4.016 18 O -0.310 6.310 19 C 0.135 3.865 20 C -0.578 4.578 21 H 0.080 0.920 22 C -0.194 4.194 23 N -0.572 5.572 24 Si 0.804 3.196 25 H -0.193 1.193 26 H -0.201 1.201 27 H -0.188 1.188 28 C -0.070 4.070 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.087 0.913 48 H 0.064 0.936 49 H 0.053 0.947 50 H 0.000 1.000 51 H -0.002 1.002 52 H 0.078 0.922 53 H 0.117 0.883 54 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.315 16.045 -23.796 28.730 hybrid contribution -0.868 -0.502 0.312 1.050 sum -2.183 15.543 -23.484 28.246 Atomic orbital electron populations 1.22459 0.94035 1.03461 1.03779 1.22533 0.94602 0.93482 0.82541 1.21873 1.02465 0.90883 1.04145 1.22456 1.01874 1.01983 0.97352 1.86583 1.69518 1.24611 1.45892 1.23092 0.76321 0.80657 0.86434 1.90549 1.35982 1.70377 1.43693 1.22099 0.99451 0.94345 0.90492 1.22607 0.89657 0.98744 1.01495 1.22392 0.98478 0.94070 1.00677 1.22342 0.94090 0.97522 1.00834 1.22451 0.97716 0.91888 0.97596 0.88577 1.23264 0.96566 0.97319 0.91947 1.65464 1.42357 1.06936 1.08032 1.22246 0.95180 0.97389 0.92198 1.22486 0.86796 0.97608 0.94691 1.87899 1.31924 1.52195 1.59010 1.19763 0.96514 0.83826 0.86353 1.21365 0.96854 1.15344 1.24247 0.92039 1.25957 1.02416 0.94481 0.96498 1.70072 1.35004 1.18570 1.33594 0.85206 0.78003 0.77684 0.78682 1.19312 1.20055 1.18777 1.23094 1.00677 0.93210 0.90035 0.91937 0.89047 0.92161 0.91171 0.88272 0.91361 0.92081 0.89107 0.91670 0.89786 0.90880 0.91709 0.90477 0.91822 0.90693 0.93391 0.90917 0.89639 0.91304 0.93564 0.94707 1.00048 1.00173 0.92169 0.88281 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.84 8.37 71.98 0.60 -2.23 16 2 C 0.10 1.65 1.13 -10.79 -0.01 1.64 16 3 C -0.14 -1.44 8.85 71.98 0.64 -0.80 16 4 C -0.18 -2.74 8.37 71.98 0.60 -2.13 16 5 O -0.35 -7.16 9.89 -51.42 -0.51 -7.67 16 6 C 0.49 11.29 6.01 71.24 0.43 11.72 16 7 O -0.52 -13.46 10.98 21.97 0.24 -13.21 16 8 C -0.06 -1.42 1.00 -50.70 -0.05 -1.47 16 9 C -0.09 -1.88 5.92 32.35 0.19 -1.69 16 10 C -0.12 -2.93 6.54 31.85 0.21 -2.72 16 11 C -0.11 -2.67 6.27 31.62 0.20 -2.47 16 12 C -0.08 -1.91 3.47 -9.30 -0.03 -1.94 16 13 H 0.10 2.41 6.77 -2.39 -0.02 2.39 16 14 C 0.04 1.01 5.16 86.43 0.45 1.45 16 15 N -0.50 -14.65 4.62 -881.09 -4.07 -18.72 16 16 C 0.06 1.69 5.21 86.30 0.45 2.14 16 17 C 0.06 2.31 6.08 71.98 0.44 2.75 16 18 O -0.39 -19.34 10.27 -148.98 -1.53 -20.87 16 19 C 0.21 12.06 5.69 71.24 0.41 12.47 16 20 C -0.54 -32.65 9.43 25.60 0.24 -32.41 16 21 H 0.06 3.69 7.81 -2.91 -0.02 3.66 16 22 C 0.00 0.26 5.46 84.66 0.46 0.73 16 23 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 24 Si 0.98 44.93 29.54 68.60 2.03 46.96 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 27 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 28 C 0.06 1.37 5.52 86.38 0.48 1.85 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.25 5.89 -2.39 -0.01 1.24 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 1.23 5.89 -2.39 -0.01 1.22 16 36 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 1.73 7.52 -2.39 -0.02 1.71 16 39 H 0.07 1.40 7.98 -2.39 -0.02 1.38 16 40 H 0.06 2.03 7.76 -2.39 -0.02 2.01 16 41 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.06 1.69 7.44 -2.39 -0.02 1.67 16 43 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.05 1.21 7.82 -2.39 -0.02 1.19 16 45 H 0.07 2.25 6.91 -2.38 -0.02 2.23 16 46 H 0.09 2.46 8.13 -2.39 -0.02 2.44 16 47 H 0.07 1.63 7.88 -2.38 -0.02 1.61 16 48 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 49 H 0.03 1.30 7.04 -2.39 -0.02 1.29 16 50 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 51 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 52 H 0.27 15.22 8.31 -92.72 -0.77 14.45 16 53 H 0.10 2.27 7.50 -2.39 -0.02 2.25 16 54 H 0.05 1.08 7.83 -2.39 -0.02 1.06 16 Total: -1.00 -69.36 414.59 2.99 -66.37 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.85 Total: 16.85 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 5.69 Total: -13.12 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -3.78 Total: -75.30 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -1.80 Total: -41.76 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -69.36 2.99 -66.37 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339157604.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.096 kcal (2) G-P(sol) polarization free energy of solvation -69.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds