Wall clock time and date at job start Sat Apr 11 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 113.99788 * 2 1 4 4 C 1.52999 * 109.47251 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47103 * 64.99574 * 4 3 2 6 6 C 1.46499 * 119.99820 * 269.99888 * 5 4 3 7 7 C 1.52997 * 109.47581 * 270.00107 * 6 5 4 8 8 H 1.09002 * 109.63562 * 304.58689 * 7 6 5 9 9 C 1.53023 * 109.64016 * 64.99988 * 7 6 5 10 10 C 1.50070 * 110.14391 * 169.11965 * 9 7 6 11 11 C 1.29438 * 124.07685 * 342.87469 * 10 9 7 12 12 C 1.50064 * 124.07618 * 0.48528 * 11 10 9 13 13 C 1.53028 * 110.14252 * 342.83792 * 12 11 10 14 14 C 1.34775 * 119.99877 * 90.00665 * 5 4 3 15 15 O 1.21581 * 120.00010 * 179.97438 * 14 5 4 16 16 N 1.34779 * 120.00115 * 359.97438 * 14 5 4 17 17 C 1.46500 * 120.00169 * 180.02562 * 16 14 5 18 18 C 1.50706 * 109.46949 * 180.02562 * 17 16 14 19 19 O 1.21292 * 120.00254 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99766 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99970 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99992 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99671 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99798 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00536 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47326 * 270.00539 * 25 23 21 27 27 H 1.48506 * 109.46545 * 30.00289 * 25 23 21 28 28 H 1.48498 * 109.47210 * 150.00000 * 25 23 21 29 29 H 1.08999 * 109.46901 * 60.00367 * 1 2 3 30 30 H 1.08996 * 109.46880 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46982 * 300.00530 * 1 2 3 32 32 H 1.09003 * 109.47279 * 59.99632 * 3 2 1 33 33 H 1.09000 * 109.47149 * 299.99413 * 3 2 1 34 34 H 1.09001 * 109.47016 * 304.99794 * 4 3 2 35 35 H 1.09002 * 109.47594 * 184.99701 * 4 3 2 36 36 H 1.09000 * 109.47059 * 30.00703 * 6 5 4 37 37 H 1.09008 * 109.46400 * 149.99985 * 6 5 4 38 38 H 1.09000 * 109.36389 * 289.32915 * 9 7 6 39 39 H 1.09003 * 109.35772 * 49.05586 * 9 7 6 40 40 H 1.08006 * 117.96088 * 162.89552 * 10 9 7 41 41 H 1.08003 * 117.96115 * 180.46828 * 11 10 9 42 42 H 1.09005 * 109.35819 * 103.05743 * 12 11 10 43 43 H 1.08998 * 109.35718 * 222.77521 * 12 11 10 44 44 H 1.09003 * 109.66017 * 289.77372 * 13 12 11 45 45 H 1.08996 * 109.64140 * 169.13657 * 13 12 11 46 46 H 0.97010 * 119.99921 * 0.02562 * 16 14 5 47 47 H 1.08996 * 109.46739 * 60.00506 * 17 16 14 48 48 H 1.09000 * 109.46609 * 300.00130 * 17 16 14 49 49 H 0.97004 * 119.99528 * 0.02562 * 20 18 17 50 50 H 0.96996 * 120.00340 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1064 -0.8925 -1.3401 7 6 5.5231 -1.3043 -0.9349 8 1 6.2492 -0.7722 -1.5496 9 6 5.7541 -0.9690 0.5402 10 6 7.0282 -1.6001 1.0202 11 6 7.6385 -2.5612 0.4044 12 6 7.1628 -3.1717 -0.8813 13 6 5.6936 -2.8173 -1.1211 14 6 4.2635 1.3329 -2.3200 15 8 4.6301 0.8178 -3.3585 16 7 4.1438 2.6728 -2.2379 17 6 4.4550 3.5086 -3.4002 18 6 4.2423 4.9584 -3.0478 19 8 3.8682 5.2635 -1.9351 20 7 4.4689 5.9159 -3.9688 21 6 4.2750 7.2347 -3.6484 22 1 3.9410 7.5063 -2.6579 23 6 4.5081 8.2219 -4.5981 24 7 4.3227 9.4861 -4.2909 25 14 5.0864 7.7522 -6.3111 26 1 6.5707 7.7210 -6.3413 27 1 4.5558 6.4103 -6.6619 28 1 4.5922 8.7518 -7.2918 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8508 0.5687 0.8427 35 1 3.9785 2.1766 0.0902 36 1 3.3859 -1.3631 -0.6712 37 1 3.9140 -1.2123 -2.3643 38 1 5.8194 0.1125 0.6590 39 1 4.9205 -1.3478 1.1316 40 1 7.4629 -1.2294 1.9369 41 1 8.5467 -2.9476 0.8429 42 1 7.7656 -2.7921 -1.7063 43 1 7.2666 -4.2554 -0.8268 44 1 5.0667 -3.3475 -0.4042 45 1 5.4105 -3.0957 -2.1361 46 1 3.8516 3.0839 -1.4092 47 1 3.8015 3.2361 -4.2289 48 1 5.4941 3.3543 -3.6909 49 1 4.7685 5.6719 -4.8585 50 1 4.4857 10.1753 -4.9536 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358269086.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:30 Heat of formation + Delta-G solvation = -96.151533 kcal Electronic energy + Delta-G solvation = -30325.235562 eV Core-core repulsion = 26159.989427 eV Total energy + Delta-G solvation = -4165.246134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.44420 -38.86009 -38.29751 -37.94436 -35.49183 -34.56590 -33.80234 -32.09412 -31.78287 -30.88491 -29.77820 -27.97848 -26.63099 -25.56241 -24.26786 -23.29133 -22.91973 -21.37567 -19.78247 -19.55641 -18.75254 -18.13568 -17.75262 -16.79479 -16.43018 -16.32418 -15.82111 -15.56845 -15.41724 -15.02631 -14.95308 -14.61167 -14.47327 -14.09473 -13.92582 -13.63764 -13.43383 -13.13951 -12.94728 -12.77211 -12.68906 -12.50592 -12.38651 -12.27245 -12.14558 -12.01905 -11.94156 -11.58891 -11.28471 -11.23904 -10.81581 -10.70583 -10.64470 -10.30819 -10.07348 -9.97279 -9.83684 -9.70405 -9.15182 -8.95439 -8.77303 -8.44777 -8.30860 -6.41615 -3.94138 2.13129 2.70955 2.99525 3.04349 3.12397 3.32433 3.55868 3.59582 3.96954 4.03438 4.51796 4.56497 4.57978 4.71884 4.85803 4.91266 5.02147 5.07001 5.13685 5.16132 5.17498 5.21221 5.23541 5.30929 5.37515 5.42143 5.46740 5.52208 5.63242 5.65230 5.68825 5.74365 5.76843 5.81825 5.83323 5.87609 5.93286 6.07067 6.25873 6.49302 6.58136 6.66581 6.78620 6.89362 7.07251 7.44298 7.99530 8.12808 8.43725 8.76343 8.80950 9.29263 9.62899 10.70535 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012460 B = 0.002638 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.637557 B =10610.385501 C =11860.167544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.039 3.961 4 C 0.107 3.893 5 N -0.620 5.620 6 C 0.144 3.856 7 C -0.105 4.105 8 H 0.077 0.923 9 C -0.086 4.086 10 C -0.153 4.153 11 C -0.160 4.160 12 C -0.090 4.090 13 C -0.111 4.111 14 C 0.706 3.294 15 O -0.594 6.594 16 N -0.728 5.728 17 C 0.125 3.875 18 C 0.439 3.561 19 O -0.581 6.581 20 N -0.576 5.576 21 C -0.310 4.310 22 H 0.121 0.879 23 C 0.045 3.955 24 N -0.875 5.875 25 Si 0.879 3.121 26 H -0.269 1.269 27 H -0.267 1.267 28 H -0.275 1.275 29 H 0.041 0.959 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.406 0.594 47 H 0.082 0.918 48 H 0.083 0.917 49 H 0.375 0.625 50 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.621 -24.094 8.795 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C -0.039 4.039 4 C -0.017 4.017 5 N -0.356 5.356 6 C 0.021 3.979 7 C -0.125 4.125 8 H 0.096 0.904 9 C -0.123 4.123 10 C -0.171 4.171 11 C -0.178 4.178 12 C -0.127 4.127 13 C -0.149 4.149 14 C 0.408 3.592 15 O -0.473 6.473 16 N -0.387 5.387 17 C -0.004 4.004 18 C 0.225 3.775 19 O -0.465 6.465 20 N -0.214 5.214 21 C -0.438 4.438 22 H 0.139 0.861 23 C -0.159 4.159 24 N -0.514 5.514 25 Si 0.705 3.295 26 H -0.194 1.194 27 H -0.192 1.192 28 H -0.200 1.200 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.245 0.755 47 H 0.100 0.900 48 H 0.101 0.899 49 H 0.208 0.792 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.489 -24.145 8.700 25.669 hybrid contribution 0.166 0.470 -0.894 1.024 sum -0.322 -23.675 7.806 24.931 Atomic orbital electron populations 1.22718 0.81178 1.02499 1.00049 1.87848 1.19560 1.27626 1.95459 1.23130 0.94403 0.85190 1.01220 1.21729 0.92252 0.99899 0.87830 1.46946 1.71006 1.06669 1.10943 1.21364 0.95422 0.78124 1.02985 1.21668 0.98367 0.96112 0.96330 0.90445 1.20592 0.95623 1.00386 0.95688 1.22091 0.97556 0.97533 0.99900 1.22032 0.99994 0.98300 0.97470 1.20434 0.96371 1.00029 0.95872 1.21561 0.96180 0.95321 1.01844 1.15822 0.78581 0.81262 0.83582 1.90889 1.54370 1.73068 1.28929 1.44938 1.72711 1.04270 1.16762 1.20799 1.02010 0.89189 0.88379 1.19667 0.85165 0.86296 0.86371 1.90520 1.51760 1.82403 1.21854 1.42120 1.59928 1.07021 1.12312 1.19431 1.43616 0.78899 1.01864 0.86101 1.25065 0.97290 0.94995 0.98557 1.69616 1.47025 0.99323 1.35403 0.86672 0.79858 0.78893 0.84094 1.19379 1.19188 1.20003 0.94083 0.89814 0.94155 0.92089 0.92583 0.88870 0.88830 0.89767 0.90042 0.90996 0.90837 0.88250 0.88356 0.90920 0.91284 0.91707 0.91391 0.75526 0.89965 0.89927 0.79220 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.01 9.53 -35.23 -0.34 -4.35 16 3 C 0.04 0.39 6.28 37.16 0.23 0.62 16 4 C 0.11 1.07 4.78 -4.04 -0.02 1.05 16 5 N -0.62 -7.66 2.30 -179.42 -0.41 -8.07 16 6 C 0.14 1.60 4.72 -4.04 -0.02 1.58 16 7 C -0.10 -1.07 2.45 -90.41 -0.22 -1.29 16 8 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 9 C -0.09 -0.79 4.03 -28.18 -0.11 -0.90 16 10 C -0.15 -1.39 9.80 -35.90 -0.35 -1.74 16 11 C -0.16 -1.41 9.80 -35.90 -0.35 -1.76 16 12 C -0.09 -0.75 6.12 -28.18 -0.17 -0.92 16 13 C -0.11 -0.96 5.31 -26.51 -0.14 -1.10 16 14 C 0.71 11.29 8.28 -86.92 -0.72 10.57 16 15 O -0.59 -11.28 15.92 5.29 0.08 -11.20 16 16 N -0.73 -11.86 5.39 -66.41 -0.36 -12.22 16 17 C 0.12 2.20 6.15 -5.19 -0.03 2.17 16 18 C 0.44 9.59 7.85 -10.98 -0.09 9.50 16 19 O -0.58 -14.39 15.24 5.55 0.08 -14.31 16 20 N -0.58 -13.34 5.09 -10.96 -0.06 -13.39 16 21 C -0.31 -8.47 10.16 -14.93 -0.15 -8.63 16 22 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 23 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 24 N -0.87 -24.87 13.96 55.50 0.77 -24.10 16 25 Si 0.88 18.98 27.74 -169.99 -4.72 14.27 16 26 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 27 H -0.27 -5.28 6.52 56.52 0.37 -4.92 16 28 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.77 6.01 -51.93 -0.31 0.46 16 35 H 0.09 0.95 6.36 -51.93 -0.33 0.62 16 36 H 0.08 0.84 7.08 -51.93 -0.37 0.47 16 37 H 0.08 1.04 7.42 -51.92 -0.39 0.65 16 38 H 0.07 0.69 6.85 -51.93 -0.36 0.34 16 39 H 0.07 0.61 7.84 -51.93 -0.41 0.20 16 40 H 0.10 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.10 0.76 8.06 -52.48 -0.42 0.34 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.52 8.12 -51.93 -0.42 0.09 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.41 6.44 5.17 -40.82 -0.21 6.23 16 47 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 48 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 49 H 0.37 7.69 5.76 -40.82 -0.24 7.46 16 50 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 400.14 15.07 6.03 6.03 Total: -1.00 -32.67 400.14 -8.11 -40.78 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -8.08 Total: 14.93 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: -1.13 Total: 11.63 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.05 Total: -57.78 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.17 Total: -29.86 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.72 Total: 14.27 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.67 -8.11 -40.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358269086.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.367 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds