Wall clock time and date at job start Sat Apr 11 2020 05:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 113.99788 * 2 1 4 4 C 1.52999 * 109.47251 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47103 * 64.99574 * 4 3 2 6 6 C 1.46499 * 119.99820 * 269.99888 * 5 4 3 7 7 C 1.52997 * 109.47581 * 270.00107 * 6 5 4 8 8 H 1.09002 * 109.63562 * 304.58689 * 7 6 5 9 9 C 1.53023 * 109.64016 * 64.99988 * 7 6 5 10 10 C 1.50070 * 110.14391 * 169.11965 * 9 7 6 11 11 C 1.29438 * 124.07685 * 342.87469 * 10 9 7 12 12 C 1.50064 * 124.07618 * 0.48528 * 11 10 9 13 13 C 1.53028 * 110.14252 * 342.83792 * 12 11 10 14 14 C 1.34775 * 119.99877 * 90.00665 * 5 4 3 15 15 O 1.21581 * 120.00010 * 179.97438 * 14 5 4 16 16 N 1.34779 * 120.00115 * 359.97438 * 14 5 4 17 17 C 1.46500 * 120.00169 * 180.02562 * 16 14 5 18 18 C 1.50706 * 109.46949 * 180.02562 * 17 16 14 19 19 O 1.21292 * 120.00254 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99766 * 179.97438 * 18 17 16 21 21 C 1.37095 * 119.99970 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99992 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99671 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99798 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00536 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47326 * 270.00539 * 25 23 21 27 27 H 1.48506 * 109.46545 * 30.00289 * 25 23 21 28 28 H 1.48498 * 109.47210 * 150.00000 * 25 23 21 29 29 H 1.08999 * 109.46901 * 60.00367 * 1 2 3 30 30 H 1.08996 * 109.46880 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46982 * 300.00530 * 1 2 3 32 32 H 1.09003 * 109.47279 * 59.99632 * 3 2 1 33 33 H 1.09000 * 109.47149 * 299.99413 * 3 2 1 34 34 H 1.09001 * 109.47016 * 304.99794 * 4 3 2 35 35 H 1.09002 * 109.47594 * 184.99701 * 4 3 2 36 36 H 1.09000 * 109.47059 * 30.00703 * 6 5 4 37 37 H 1.09008 * 109.46400 * 149.99985 * 6 5 4 38 38 H 1.09000 * 109.36389 * 289.32915 * 9 7 6 39 39 H 1.09003 * 109.35772 * 49.05586 * 9 7 6 40 40 H 1.08006 * 117.96088 * 162.89552 * 10 9 7 41 41 H 1.08003 * 117.96115 * 180.46828 * 11 10 9 42 42 H 1.09005 * 109.35819 * 103.05743 * 12 11 10 43 43 H 1.08998 * 109.35718 * 222.77521 * 12 11 10 44 44 H 1.09003 * 109.66017 * 289.77372 * 13 12 11 45 45 H 1.08996 * 109.64140 * 169.13657 * 13 12 11 46 46 H 0.97010 * 119.99921 * 0.02562 * 16 14 5 47 47 H 1.08996 * 109.46739 * 60.00506 * 17 16 14 48 48 H 1.09000 * 109.46609 * 300.00130 * 17 16 14 49 49 H 0.97004 * 119.99528 * 0.02562 * 20 18 17 50 50 H 0.96996 * 120.00340 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1064 -0.8925 -1.3401 7 6 5.5231 -1.3043 -0.9349 8 1 6.2492 -0.7722 -1.5496 9 6 5.7541 -0.9690 0.5402 10 6 7.0282 -1.6001 1.0202 11 6 7.6385 -2.5612 0.4044 12 6 7.1628 -3.1717 -0.8813 13 6 5.6936 -2.8173 -1.1211 14 6 4.2635 1.3329 -2.3200 15 8 4.6301 0.8178 -3.3585 16 7 4.1438 2.6728 -2.2379 17 6 4.4550 3.5086 -3.4002 18 6 4.2423 4.9584 -3.0478 19 8 3.8682 5.2635 -1.9351 20 7 4.4689 5.9159 -3.9688 21 6 4.2750 7.2347 -3.6484 22 1 3.9410 7.5063 -2.6579 23 6 4.5081 8.2219 -4.5981 24 7 4.3227 9.4861 -4.2909 25 14 5.0864 7.7522 -6.3111 26 1 6.5707 7.7210 -6.3413 27 1 4.5558 6.4103 -6.6619 28 1 4.5922 8.7518 -7.2918 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8508 0.5687 0.8427 35 1 3.9785 2.1766 0.0902 36 1 3.3859 -1.3631 -0.6712 37 1 3.9140 -1.2123 -2.3643 38 1 5.8194 0.1125 0.6590 39 1 4.9205 -1.3478 1.1316 40 1 7.4629 -1.2294 1.9369 41 1 8.5467 -2.9476 0.8429 42 1 7.7656 -2.7921 -1.7063 43 1 7.2666 -4.2554 -0.8268 44 1 5.0667 -3.3475 -0.4042 45 1 5.4105 -3.0957 -2.1361 46 1 3.8516 3.0839 -1.4092 47 1 3.8015 3.2361 -4.2289 48 1 5.4941 3.3543 -3.6909 49 1 4.7685 5.6719 -4.8585 50 1 4.4857 10.1753 -4.9536 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358269086.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:30 Heat of formation + Delta-G solvation = -118.354993 kcal Electronic energy + Delta-G solvation = -30326.198376 eV Core-core repulsion = 26159.989427 eV Total energy + Delta-G solvation = -4166.208949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61318 -40.35203 -39.39307 -38.80619 -36.51279 -36.29632 -35.38743 -33.83447 -32.91132 -31.57799 -30.67095 -29.44180 -27.39405 -26.75420 -25.76951 -24.23024 -23.69982 -22.23244 -21.47197 -20.96527 -20.46310 -19.22743 -18.67675 -17.83693 -17.47643 -17.26883 -17.15944 -16.74376 -16.65858 -16.55201 -16.00971 -15.75990 -15.54447 -15.41864 -15.03838 -14.88033 -14.44331 -14.36025 -14.13535 -14.04309 -13.90482 -13.65444 -13.37517 -13.33812 -13.19483 -13.02670 -12.96184 -12.67258 -12.44671 -12.38657 -12.05030 -12.00582 -11.63117 -11.58176 -11.52161 -11.20012 -11.01299 -10.65066 -10.63367 -10.34203 -10.25291 -9.82584 -9.49080 -8.45599 -6.07210 1.30987 1.33948 1.43179 1.45510 1.56028 1.78378 2.10255 2.20213 2.67477 2.83114 3.01666 3.10888 3.79959 3.81463 3.95074 3.98311 4.04342 4.11313 4.26860 4.32738 4.39452 4.42449 4.44853 4.48367 4.50699 4.54188 4.58476 4.63003 4.70416 4.76570 4.82471 4.86801 4.89171 4.99645 5.06738 5.08852 5.18519 5.29549 5.34244 5.43321 5.49851 5.63310 5.83439 5.87659 5.91252 6.11263 6.19073 6.48745 6.77943 6.90282 7.28352 7.51179 7.77580 8.70708 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012460 B = 0.002638 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.637557 B =10610.385501 C =11860.167544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.041 3.959 4 C 0.105 3.895 5 N -0.611 5.611 6 C 0.148 3.852 7 C -0.098 4.098 8 H 0.046 0.954 9 C -0.083 4.083 10 C -0.164 4.164 11 C -0.165 4.165 12 C -0.092 4.092 13 C -0.108 4.108 14 C 0.705 3.295 15 O -0.626 6.626 16 N -0.729 5.729 17 C 0.137 3.863 18 C 0.447 3.553 19 O -0.612 6.612 20 N -0.578 5.578 21 C -0.329 4.329 22 H 0.065 0.935 23 C -0.007 4.007 24 N -0.925 5.925 25 Si 0.957 3.043 26 H -0.257 1.257 27 H -0.234 1.234 28 H -0.273 1.273 29 H 0.033 0.967 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.408 0.592 47 H 0.099 0.901 48 H 0.100 0.900 49 H 0.391 0.609 50 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.252 -26.654 8.348 27.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C -0.037 4.037 4 C -0.018 4.018 5 N -0.346 5.346 6 C 0.025 3.975 7 C -0.118 4.118 8 H 0.065 0.935 9 C -0.119 4.119 10 C -0.182 4.182 11 C -0.183 4.183 12 C -0.129 4.129 13 C -0.146 4.146 14 C 0.406 3.594 15 O -0.507 6.507 16 N -0.389 5.389 17 C 0.008 3.992 18 C 0.235 3.765 19 O -0.498 6.498 20 N -0.218 5.218 21 C -0.458 4.458 22 H 0.083 0.917 23 C -0.207 4.207 24 N -0.565 5.565 25 Si 0.777 3.223 26 H -0.181 1.181 27 H -0.157 1.157 28 H -0.198 1.198 29 H 0.052 0.948 30 H 0.118 0.882 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.053 0.947 34 H 0.134 0.866 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.083 0.917 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.247 0.753 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.227 0.773 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.134 -26.743 8.293 28.000 hybrid contribution -0.011 1.228 -0.596 1.365 sum -0.145 -25.515 7.697 26.651 Atomic orbital electron populations 1.22866 0.80074 1.03674 1.00259 1.87816 1.20788 1.27520 1.95514 1.23075 0.94225 0.85305 1.01067 1.21905 0.92397 1.00206 0.87302 1.47003 1.69834 1.07003 1.10758 1.21432 0.96473 0.77231 1.02368 1.21550 0.96702 0.96944 0.96605 0.93512 1.20558 0.96399 1.00104 0.94871 1.22214 0.97715 0.97793 1.00509 1.22215 1.00342 0.98221 0.97492 1.20467 0.95886 1.01049 0.95470 1.21553 0.96774 0.94088 1.02206 1.15925 0.78443 0.81045 0.83995 1.90862 1.55930 1.73497 1.30418 1.44897 1.73018 1.04471 1.16478 1.20685 1.03423 0.85875 0.89205 1.20446 0.82800 0.87845 0.85450 1.90509 1.52468 1.83464 1.23367 1.41925 1.60790 1.05624 1.13442 1.19026 1.45209 0.81340 1.00249 0.91676 1.26037 0.96672 0.94369 1.03649 1.69774 1.48321 1.00899 1.37524 0.85468 0.79768 0.80118 0.76933 1.18142 1.15704 1.19839 0.94843 0.88225 0.92978 0.90292 0.94709 0.86570 0.88973 0.88089 0.91849 0.91598 0.89436 0.87412 0.87300 0.91709 0.89643 0.90431 0.91493 0.75306 0.88345 0.88225 0.77286 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.40 -7.54 9.53 -148.98 -1.42 -8.96 16 3 C 0.04 0.79 6.28 71.98 0.45 1.24 16 4 C 0.10 1.96 4.78 86.38 0.41 2.38 16 5 N -0.61 -14.57 2.30 -839.82 -1.93 -16.50 16 6 C 0.15 3.10 4.72 86.38 0.41 3.51 16 7 C -0.10 -1.91 2.45 -10.66 -0.03 -1.93 16 8 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 9 C -0.08 -1.36 4.03 29.66 0.12 -1.24 16 10 C -0.16 -2.70 9.80 27.04 0.27 -2.44 16 11 C -0.16 -2.61 9.80 27.04 0.27 -2.35 16 12 C -0.09 -1.39 6.12 29.66 0.18 -1.21 16 13 C -0.11 -1.71 5.31 30.73 0.16 -1.54 16 14 C 0.70 22.08 8.28 179.05 1.48 23.56 16 15 O -0.63 -23.45 15.92 -3.97 -0.06 -23.51 16 16 N -0.73 -23.29 5.39 -482.30 -2.60 -25.89 16 17 C 0.14 4.63 6.15 85.63 0.53 5.16 16 18 C 0.45 19.46 7.85 87.66 0.69 20.15 16 19 O -0.61 -31.01 15.24 -3.07 -0.05 -31.06 16 20 N -0.58 -26.54 5.09 -306.98 -1.56 -28.10 16 21 C -0.33 -18.57 10.16 84.04 0.85 -17.72 16 22 H 0.07 4.32 7.39 -2.91 -0.02 4.30 16 23 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 24 N -0.93 -54.14 13.96 21.66 0.30 -53.84 16 25 Si 0.96 38.18 27.74 68.60 1.90 40.08 16 26 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 27 H -0.23 -8.01 6.52 99.48 0.65 -7.36 16 28 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 29 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.12 1.66 6.01 -2.39 -0.01 1.65 16 35 H 0.09 1.78 6.36 -2.39 -0.02 1.77 16 36 H 0.10 1.80 7.08 -2.39 -0.02 1.79 16 37 H 0.06 1.59 7.42 -2.38 -0.02 1.57 16 38 H 0.07 1.17 6.85 -2.39 -0.02 1.15 16 39 H 0.09 1.20 7.84 -2.39 -0.02 1.19 16 40 H 0.11 1.57 8.06 -2.91 -0.02 1.54 16 41 H 0.11 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 43 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.08 1.04 8.12 -2.39 -0.02 1.02 16 45 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.41 12.83 5.17 -92.70 -0.48 12.35 16 47 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 48 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 49 H 0.39 15.21 5.76 -92.71 -0.53 14.68 16 50 H 0.28 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -73.61 400.14 1.97 -71.64 By element: Atomic # 1 Polarization: 46.98 SS G_CDS: -0.12 Total: 46.85 kcal Atomic # 6 Polarization: 21.79 SS G_CDS: 7.51 Total: 29.30 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -5.79 Total: -124.34 kcal Atomic # 8 Polarization: -62.01 SS G_CDS: -1.53 Total: -63.54 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 1.90 Total: 40.08 kcal Total: -73.61 1.97 -71.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358269086.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.716 kcal (2) G-P(sol) polarization free energy of solvation -73.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds