Wall clock time and date at job start Sat Apr 11 2020 05:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 113.99905 * 2 1 4 4 C 1.50702 * 109.47263 * 180.02562 * 3 2 1 5 5 O 1.21286 * 119.99902 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00261 * 180.02562 * 4 3 2 7 7 C 1.46929 * 120.62936 * 179.97438 * 6 4 3 8 8 C 1.53188 * 108.89207 * 126.33781 * 7 6 4 9 9 C 1.53352 * 109.15125 * 54.57513 * 8 7 6 10 10 N 1.46495 * 109.41932 * 178.67180 * 9 8 7 11 11 C 1.34777 * 120.00677 * 275.12914 * 10 9 8 12 12 O 1.21595 * 119.99421 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00601 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00177 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47326 * 178.29064 * 14 13 11 16 16 C 1.50695 * 115.54873 * 65.14307 * 15 14 13 17 17 H 1.07998 * 120.00118 * 265.41113 * 16 15 14 18 18 C 1.37883 * 119.99867 * 85.40405 * 16 15 14 19 19 N 1.31512 * 119.99967 * 353.55489 * 18 16 15 20 20 Si 1.86798 * 119.99868 * 173.55481 * 18 16 15 21 21 H 1.48500 * 109.47050 * 90.00143 * 20 18 16 22 22 H 1.48502 * 109.47210 * 210.00421 * 20 18 16 23 23 H 1.48498 * 109.47186 * 330.00259 * 20 18 16 24 24 C 1.52995 * 117.49572 * 279.47510 * 15 14 13 25 25 C 1.52996 * 117.49636 * 210.81414 * 15 14 13 26 26 C 1.53036 * 109.60756 * 298.71266 * 9 8 7 27 27 C 1.46920 * 120.62993 * 0.02562 * 6 4 3 28 28 H 1.08996 * 109.47051 * 60.00425 * 1 2 3 29 29 H 1.09002 * 109.47402 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47469 * 300.00309 * 1 2 3 31 31 H 1.08999 * 109.47710 * 59.99730 * 3 2 1 32 32 H 1.09007 * 109.46991 * 299.99243 * 3 2 1 33 33 H 1.08997 * 109.58307 * 246.19633 * 7 6 4 34 34 H 1.08999 * 109.58375 * 6.47926 * 7 6 4 35 35 H 1.09004 * 109.49819 * 174.65759 * 8 7 6 36 36 H 1.09003 * 109.49799 * 294.75308 * 8 7 6 37 37 H 1.08998 * 109.41750 * 58.75358 * 9 8 7 38 38 H 0.97000 * 119.99883 * 95.12692 * 10 9 8 39 39 H 0.97001 * 120.00213 * 0.02562 * 13 11 10 40 40 H 1.08996 * 109.47604 * 298.29339 * 14 13 11 41 41 H 1.09007 * 109.47085 * 58.29307 * 14 13 11 42 42 H 0.97002 * 119.99958 * 185.06603 * 19 18 16 43 43 H 1.08992 * 117.50685 * 359.97438 * 24 15 14 44 44 H 1.09010 * 117.49644 * 145.02329 * 24 15 14 45 45 H 1.09008 * 117.49546 * 214.97376 * 25 15 14 46 46 H 1.08995 * 117.50597 * 359.97438 * 25 15 14 47 47 H 1.09003 * 109.49768 * 301.41899 * 26 9 8 48 48 H 1.09006 * 109.49701 * 181.32445 * 26 9 8 49 49 H 1.09000 * 109.59162 * 353.38113 * 27 6 4 50 50 H 1.09003 * 109.58674 * 113.66489 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0915 -0.0006 6 7 4.2764 2.2968 -0.0002 7 6 5.7423 2.1969 -0.0003 8 6 6.2956 3.0204 -1.1675 9 6 5.7603 4.4542 -1.0699 10 7 6.3111 5.2554 -2.1657 11 6 7.5219 5.8330 -2.0359 12 8 8.1573 5.6887 -1.0092 13 7 8.0288 6.5696 -3.0442 14 6 9.3446 7.1979 -2.9027 15 6 9.6998 7.9345 -4.1959 16 6 8.8180 9.1073 -4.5391 17 1 7.9758 8.9740 -5.2018 18 6 9.0865 10.3507 -4.0068 19 7 10.0317 10.4889 -3.1030 20 14 8.1075 11.8387 -4.5696 21 1 6.9118 12.0008 -3.7041 22 1 8.9557 13.0540 -4.4749 23 1 7.6768 11.6443 -5.9774 24 6 10.2500 7.1012 -5.3551 25 6 11.1801 8.0300 -4.5706 26 6 4.2330 4.4398 -1.1664 27 6 3.6592 3.6301 0.0014 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 6.1350 2.5852 0.9394 34 1 6.0374 1.1541 -0.1165 35 1 7.3846 3.0311 -1.1212 36 1 5.9754 2.5764 -2.1100 37 1 6.0599 4.8887 -0.1162 38 1 5.8044 5.3701 -2.9848 39 1 7.5221 6.6845 -3.8633 40 1 9.3217 7.9071 -2.0753 41 1 10.0937 6.4315 -2.7036 42 1 10.1715 11.3480 -2.6749 43 1 10.3593 6.0285 -5.1965 44 1 9.9745 7.4017 -6.3661 45 1 11.5161 8.9412 -5.0659 46 1 11.9010 7.5686 -3.8958 47 1 3.9323 3.9826 -2.1091 48 1 3.8560 5.4616 -1.1205 49 1 2.5799 3.5333 -0.1162 50 1 3.8805 4.1340 0.9423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430444903.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:51 Heat of formation + Delta-G solvation = -83.460506 kcal Electronic energy + Delta-G solvation = -29574.040114 eV Core-core repulsion = 25409.344304 eV Total energy + Delta-G solvation = -4164.695810 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.66127 -39.53804 -38.20691 -37.34913 -36.65893 -34.55648 -33.29140 -32.00574 -31.82934 -31.11930 -29.08704 -26.63241 -26.18811 -25.33738 -24.32176 -23.48827 -21.37022 -21.15656 -20.28377 -19.51832 -19.38670 -17.96680 -17.63665 -16.89092 -16.72358 -16.39444 -15.94577 -15.72742 -15.21359 -14.95445 -14.85064 -14.65314 -14.27163 -14.13417 -14.12227 -13.74183 -13.51671 -13.25752 -13.07838 -12.78728 -12.62752 -12.58046 -12.07707 -11.89889 -11.85286 -11.61280 -11.57918 -11.11615 -11.02921 -10.95336 -10.87922 -10.55153 -10.28383 -10.27057 -10.02103 -9.77547 -9.54862 -9.03098 -8.98849 -8.88060 -8.51667 -8.27868 -8.00090 -6.09876 -4.18463 2.26196 2.34363 3.12949 3.22578 3.30973 3.32456 3.45717 3.74756 4.13834 4.27861 4.32356 4.56923 4.59059 4.66791 4.68121 4.76470 4.85960 4.90334 4.93305 4.96894 5.13238 5.17422 5.18508 5.22186 5.33760 5.42556 5.51716 5.61224 5.73860 5.82274 6.01278 6.10028 6.20877 6.33108 6.45764 6.52851 6.58464 6.68349 6.74077 6.83931 7.00825 7.07739 7.30535 7.39655 7.45117 7.57545 7.78915 7.84237 8.32117 8.63295 8.82060 9.17619 9.48042 10.97884 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020161 B = 0.002013 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.485037 B =13905.633589 C =14625.538344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.368 6.368 3 C 0.044 3.956 4 C 0.516 3.484 5 O -0.520 6.520 6 N -0.612 5.612 7 C 0.116 3.884 8 C -0.144 4.144 9 C 0.167 3.833 10 N -0.751 5.751 11 C 0.698 3.302 12 O -0.602 6.602 13 N -0.720 5.720 14 C 0.183 3.817 15 C 0.027 3.973 16 C -0.499 4.499 17 H 0.059 0.941 18 C 0.073 3.927 19 N -0.873 5.873 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.210 4.210 25 C -0.147 4.147 26 C -0.144 4.144 27 C 0.110 3.890 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.393 0.607 39 H 0.395 0.605 40 H 0.069 0.931 41 H 0.034 0.966 42 H 0.262 0.738 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.244 -14.053 4.935 23.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.303 3.697 5 O -0.395 6.395 6 N -0.348 5.348 7 C -0.007 4.007 8 C -0.184 4.184 9 C 0.061 3.939 10 N -0.407 5.407 11 C 0.398 3.602 12 O -0.482 6.482 13 N -0.372 5.372 14 C 0.059 3.941 15 C 0.026 3.974 16 C -0.537 4.537 17 H 0.077 0.923 18 C -0.131 4.131 19 N -0.509 5.509 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.248 4.248 25 C -0.186 4.186 26 C -0.183 4.183 27 C -0.014 4.014 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.226 0.774 39 H 0.229 0.771 40 H 0.088 0.912 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.105 0.895 49 H 0.104 0.896 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.072 -14.767 5.957 23.346 hybrid contribution -1.178 1.482 -1.068 2.174 sum -18.250 -13.285 4.890 23.097 Atomic orbital electron populations 1.22852 0.80248 1.03430 1.00179 1.88022 1.19878 1.25217 1.95410 1.22300 0.91802 0.87005 1.02530 1.20224 0.88649 0.84191 0.76653 1.90734 1.74428 1.26144 1.48161 1.48119 1.07184 1.05645 1.73873 1.21625 0.77865 1.02334 0.98831 1.22423 1.02245 0.95239 0.98504 1.20681 0.91285 0.90243 0.91690 1.45155 1.19779 1.56149 1.19571 1.16050 0.80991 0.78942 0.84194 1.90873 1.60732 1.67325 1.29264 1.45160 1.21982 1.52834 1.17217 1.20843 0.80152 0.93640 0.99463 1.19057 0.93801 0.94958 0.89606 1.20309 1.12424 0.91266 1.29689 0.92289 1.24994 0.94649 0.98630 0.94832 1.69975 1.30983 1.24889 1.25082 0.86631 0.79832 0.82574 0.79186 1.20728 1.21175 1.19868 1.23017 1.08882 0.95191 0.97676 1.22492 0.94009 0.99576 1.02486 1.22233 0.95483 1.01350 0.99196 1.21768 0.97725 0.82532 0.99328 0.93721 0.89012 0.93749 0.90171 0.90150 0.90816 0.88666 0.89575 0.91477 0.89216 0.77382 0.77120 0.91225 0.94736 0.92842 0.91651 0.90416 0.89826 0.91630 0.90782 0.89474 0.89555 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.37 -3.64 10.24 -55.14 -0.56 -4.21 16 3 C 0.04 0.32 4.76 36.01 0.17 0.49 16 4 C 0.52 5.58 7.78 -10.98 -0.09 5.49 16 5 O -0.52 -8.04 15.91 -14.36 -0.23 -8.27 16 6 N -0.61 -5.45 2.97 -172.73 -0.51 -5.96 16 7 C 0.12 1.17 6.42 -3.71 -0.02 1.15 16 8 C -0.14 -1.57 5.68 -26.45 -0.15 -1.72 16 9 C 0.17 1.80 2.42 -67.73 -0.16 1.63 16 10 N -0.75 -9.61 5.08 -58.48 -0.30 -9.90 16 11 C 0.70 12.62 8.53 -86.92 -0.74 11.88 16 12 O -0.60 -13.20 16.01 5.28 0.08 -13.11 16 13 N -0.72 -13.57 5.48 -65.22 -0.36 -13.93 16 14 C 0.18 4.10 5.50 -4.04 -0.02 4.08 16 15 C 0.03 0.61 1.38 -155.66 -0.21 0.40 16 16 C -0.50 -12.57 8.63 -34.44 -0.30 -12.86 16 17 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 18 C 0.07 1.91 5.39 -17.82 -0.10 1.81 16 19 N -0.87 -23.95 12.91 55.43 0.72 -23.23 16 20 Si 0.89 20.18 29.55 -169.99 -5.02 15.15 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 C -0.21 -4.31 9.96 -26.69 -0.27 -4.57 16 25 C -0.15 -3.33 9.42 -26.69 -0.25 -3.58 16 26 C -0.14 -1.00 5.55 -26.58 -0.15 -1.15 16 27 C 0.11 0.65 6.34 -3.68 -0.02 0.62 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.39 7.94 -51.93 -0.41 -0.03 16 32 H 0.08 0.40 7.69 -51.92 -0.40 0.00 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.15 7.58 -51.93 -0.39 0.75 16 38 H 0.39 4.04 8.62 -40.82 -0.35 3.69 16 39 H 0.40 6.73 8.38 -40.82 -0.34 6.39 16 40 H 0.07 1.81 8.14 -51.93 -0.42 1.38 16 41 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 42 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.08 1.56 8.14 -51.92 -0.42 1.14 16 45 H 0.08 2.01 8.14 -51.92 -0.42 1.58 16 46 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.09 0.29 5.93 -51.93 -0.31 -0.02 16 50 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 409.60 15.07 6.17 6.17 Total: -1.00 -34.12 409.60 -9.66 -43.79 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -8.46 Total: 8.54 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -1.20 Total: 4.95 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.45 Total: -53.02 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.71 Total: -25.58 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.12 -9.66 -43.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430444903.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.675 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds