Wall clock time and date at job start Sat Apr 11 2020 05:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 113.99905 * 2 1 4 4 C 1.50702 * 109.47263 * 180.02562 * 3 2 1 5 5 O 1.21286 * 119.99902 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00261 * 180.02562 * 4 3 2 7 7 C 1.46929 * 120.62936 * 179.97438 * 6 4 3 8 8 C 1.53188 * 108.89207 * 126.33781 * 7 6 4 9 9 C 1.53352 * 109.15125 * 54.57513 * 8 7 6 10 10 N 1.46495 * 109.41932 * 178.67180 * 9 8 7 11 11 C 1.34777 * 120.00677 * 275.12914 * 10 9 8 12 12 O 1.21595 * 119.99421 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00601 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00177 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47326 * 178.29064 * 14 13 11 16 16 C 1.50695 * 115.54873 * 65.14307 * 15 14 13 17 17 H 1.07998 * 120.00118 * 265.41113 * 16 15 14 18 18 C 1.37883 * 119.99867 * 85.40405 * 16 15 14 19 19 N 1.31512 * 119.99967 * 353.55489 * 18 16 15 20 20 Si 1.86798 * 119.99868 * 173.55481 * 18 16 15 21 21 H 1.48500 * 109.47050 * 90.00143 * 20 18 16 22 22 H 1.48502 * 109.47210 * 210.00421 * 20 18 16 23 23 H 1.48498 * 109.47186 * 330.00259 * 20 18 16 24 24 C 1.52995 * 117.49572 * 279.47510 * 15 14 13 25 25 C 1.52996 * 117.49636 * 210.81414 * 15 14 13 26 26 C 1.53036 * 109.60756 * 298.71266 * 9 8 7 27 27 C 1.46920 * 120.62993 * 0.02562 * 6 4 3 28 28 H 1.08996 * 109.47051 * 60.00425 * 1 2 3 29 29 H 1.09002 * 109.47402 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47469 * 300.00309 * 1 2 3 31 31 H 1.08999 * 109.47710 * 59.99730 * 3 2 1 32 32 H 1.09007 * 109.46991 * 299.99243 * 3 2 1 33 33 H 1.08997 * 109.58307 * 246.19633 * 7 6 4 34 34 H 1.08999 * 109.58375 * 6.47926 * 7 6 4 35 35 H 1.09004 * 109.49819 * 174.65759 * 8 7 6 36 36 H 1.09003 * 109.49799 * 294.75308 * 8 7 6 37 37 H 1.08998 * 109.41750 * 58.75358 * 9 8 7 38 38 H 0.97000 * 119.99883 * 95.12692 * 10 9 8 39 39 H 0.97001 * 120.00213 * 0.02562 * 13 11 10 40 40 H 1.08996 * 109.47604 * 298.29339 * 14 13 11 41 41 H 1.09007 * 109.47085 * 58.29307 * 14 13 11 42 42 H 0.97002 * 119.99958 * 185.06603 * 19 18 16 43 43 H 1.08992 * 117.50685 * 359.97438 * 24 15 14 44 44 H 1.09010 * 117.49644 * 145.02329 * 24 15 14 45 45 H 1.09008 * 117.49546 * 214.97376 * 25 15 14 46 46 H 1.08995 * 117.50597 * 359.97438 * 25 15 14 47 47 H 1.09003 * 109.49768 * 301.41899 * 26 9 8 48 48 H 1.09006 * 109.49701 * 181.32445 * 26 9 8 49 49 H 1.09000 * 109.59162 * 353.38113 * 27 6 4 50 50 H 1.09003 * 109.58674 * 113.66489 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0915 -0.0006 6 7 4.2764 2.2968 -0.0002 7 6 5.7423 2.1969 -0.0003 8 6 6.2956 3.0204 -1.1675 9 6 5.7603 4.4542 -1.0699 10 7 6.3111 5.2554 -2.1657 11 6 7.5219 5.8330 -2.0359 12 8 8.1573 5.6887 -1.0092 13 7 8.0288 6.5696 -3.0442 14 6 9.3446 7.1979 -2.9027 15 6 9.6998 7.9345 -4.1959 16 6 8.8180 9.1073 -4.5391 17 1 7.9758 8.9740 -5.2018 18 6 9.0865 10.3507 -4.0068 19 7 10.0317 10.4889 -3.1030 20 14 8.1075 11.8387 -4.5696 21 1 6.9118 12.0008 -3.7041 22 1 8.9557 13.0540 -4.4749 23 1 7.6768 11.6443 -5.9774 24 6 10.2500 7.1012 -5.3551 25 6 11.1801 8.0300 -4.5706 26 6 4.2330 4.4398 -1.1664 27 6 3.6592 3.6301 0.0014 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 6.1350 2.5852 0.9394 34 1 6.0374 1.1541 -0.1165 35 1 7.3846 3.0311 -1.1212 36 1 5.9754 2.5764 -2.1100 37 1 6.0599 4.8887 -0.1162 38 1 5.8044 5.3701 -2.9848 39 1 7.5221 6.6845 -3.8633 40 1 9.3217 7.9071 -2.0753 41 1 10.0937 6.4315 -2.7036 42 1 10.1715 11.3480 -2.6749 43 1 10.3593 6.0285 -5.1965 44 1 9.9745 7.4017 -6.3661 45 1 11.5161 8.9412 -5.0659 46 1 11.9010 7.5686 -3.8958 47 1 3.9323 3.9826 -2.1091 48 1 3.8560 5.4616 -1.1205 49 1 2.5799 3.5333 -0.1162 50 1 3.8805 4.1340 0.9423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430444903.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:50 Heat of formation + Delta-G solvation = -107.638672 kcal Electronic energy + Delta-G solvation = -29575.088558 eV Core-core repulsion = 25409.344304 eV Total energy + Delta-G solvation = -4165.744254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.51395 -40.81476 -39.04795 -38.48240 -37.98614 -35.63533 -34.90916 -33.94949 -32.67988 -31.99501 -29.68461 -28.08833 -27.19726 -26.76527 -25.31371 -24.22990 -22.97222 -22.16182 -21.65988 -21.20661 -20.30068 -19.12289 -18.62121 -18.00367 -17.52117 -17.28342 -17.17856 -16.68930 -16.58733 -16.28295 -15.83194 -15.75307 -15.52166 -15.42526 -15.19013 -14.80964 -14.69601 -14.38599 -14.06370 -13.91551 -13.66645 -13.46704 -13.31060 -13.14280 -12.95143 -12.89765 -12.82075 -12.34625 -12.33180 -12.25880 -12.03716 -11.95218 -11.72783 -11.49744 -11.24552 -10.83215 -10.82684 -10.74200 -10.44539 -10.21981 -10.04094 -9.79111 -9.55897 -8.07356 -6.20478 1.43515 1.46785 1.49451 1.54919 1.68167 1.87114 2.28953 2.44240 2.95771 3.20730 3.33563 3.53045 3.62076 3.67029 3.89566 4.01817 4.10301 4.16141 4.26394 4.26865 4.27354 4.41619 4.51852 4.52900 4.58000 4.60719 4.67393 4.72034 4.75974 4.76823 4.81621 4.90504 4.96517 5.00267 5.03879 5.08513 5.24046 5.28856 5.44783 5.60270 5.61669 5.64614 5.74739 5.81193 6.05365 6.20590 6.34777 6.38937 6.86309 7.08824 7.29130 7.48668 7.74137 9.00170 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020161 B = 0.002013 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.485037 B =13905.633589 C =14625.538344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.045 3.955 4 C 0.508 3.492 5 O -0.580 6.580 6 N -0.606 5.606 7 C 0.119 3.881 8 C -0.134 4.134 9 C 0.163 3.837 10 N -0.729 5.729 11 C 0.696 3.304 12 O -0.645 6.645 13 N -0.716 5.716 14 C 0.201 3.799 15 C 0.005 3.995 16 C -0.501 4.501 17 H 0.065 0.935 18 C 0.022 3.978 19 N -0.908 5.908 20 Si 0.952 3.048 21 H -0.278 1.278 22 H -0.292 1.292 23 H -0.264 1.264 24 C -0.176 4.176 25 C -0.160 4.160 26 C -0.133 4.133 27 C 0.106 3.894 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.410 0.590 39 H 0.406 0.594 40 H 0.026 0.974 41 H 0.029 0.971 42 H 0.258 0.742 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.104 0.896 49 H 0.125 0.875 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.671 -13.807 3.815 25.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.033 4.033 4 C 0.297 3.703 5 O -0.459 6.459 6 N -0.341 5.341 7 C -0.004 4.004 8 C -0.174 4.174 9 C 0.058 3.942 10 N -0.385 5.385 11 C 0.396 3.604 12 O -0.527 6.527 13 N -0.369 5.369 14 C 0.076 3.924 15 C 0.004 3.996 16 C -0.539 4.539 17 H 0.083 0.917 18 C -0.178 4.178 19 N -0.546 5.546 20 Si 0.778 3.222 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.188 1.188 24 C -0.213 4.213 25 C -0.199 4.199 26 C -0.172 4.172 27 C -0.015 4.015 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.246 0.754 39 H 0.242 0.758 40 H 0.044 0.956 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.106 0.894 48 H 0.123 0.877 49 H 0.143 0.857 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.581 -14.507 4.796 25.633 hybrid contribution -0.110 1.362 -0.700 1.536 sum -20.691 -13.145 4.096 24.854 Atomic orbital electron populations 1.23034 0.78190 1.04110 1.01778 1.87968 1.22220 1.26943 1.95803 1.22464 0.88709 0.86769 1.05407 1.21026 0.90408 0.83500 0.75336 1.90705 1.75717 1.28414 1.51037 1.48188 1.06351 1.06774 1.72772 1.21436 0.79372 1.01007 0.98577 1.22270 1.00488 0.95660 0.98961 1.20882 0.94198 0.89169 0.89984 1.45005 1.17863 1.54821 1.20820 1.16226 0.82102 0.78846 0.83257 1.90847 1.62298 1.68706 1.30861 1.44917 1.21092 1.52924 1.18005 1.20352 0.81855 0.92503 0.97687 1.19099 0.93838 0.95709 0.90968 1.20626 1.12479 0.91835 1.28915 0.91678 1.25736 0.95738 1.01363 0.95006 1.70112 1.32798 1.25147 1.26527 0.85655 0.78331 0.79114 0.79106 1.20419 1.21843 1.18794 1.22993 1.05525 0.95810 0.96943 1.22435 0.94151 0.99793 1.03499 1.22203 0.91729 1.02823 1.00431 1.22079 0.99641 0.80472 0.99359 0.92073 0.89014 0.92063 0.87022 0.86983 0.90610 0.90548 0.92436 0.91127 0.91293 0.75395 0.75836 0.95596 0.95252 0.93289 0.89506 0.89499 0.91761 0.91253 0.89402 0.87749 0.85655 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 11.01 113.37 1.25 1.45 16 2 O -0.41 -7.42 10.24 -129.94 -1.33 -8.75 16 3 C 0.05 0.53 4.76 71.24 0.34 0.86 16 4 C 0.51 10.30 7.78 87.66 0.68 10.98 16 5 O -0.58 -18.31 15.91 15.99 0.25 -18.05 16 6 N -0.61 -9.71 2.97 -818.79 -2.43 -12.15 16 7 C 0.12 2.44 6.42 86.36 0.55 2.99 16 8 C -0.13 -2.90 5.68 30.78 0.17 -2.72 16 9 C 0.16 3.29 2.42 45.12 0.11 3.39 16 10 N -0.73 -17.57 5.08 -457.20 -2.32 -19.89 16 11 C 0.70 25.03 8.53 179.06 1.53 26.56 16 12 O -0.64 -28.97 16.01 -4.02 -0.06 -29.03 16 13 N -0.72 -26.69 5.48 -478.53 -2.62 -29.31 16 14 C 0.20 9.18 5.50 86.38 0.48 9.66 16 15 C 0.00 0.21 1.38 -52.93 -0.07 0.14 16 16 C -0.50 -24.90 8.63 25.60 0.22 -24.68 16 17 H 0.07 3.09 7.82 -2.91 -0.02 3.07 16 18 C 0.02 1.15 5.39 84.66 0.46 1.61 16 19 N -0.91 -50.87 12.91 21.45 0.28 -50.59 16 20 Si 0.95 41.21 29.55 68.60 2.03 43.24 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 24 C -0.18 -6.87 9.96 30.62 0.30 -6.57 16 25 C -0.16 -7.27 9.42 30.62 0.29 -6.98 16 26 C -0.13 -1.36 5.55 30.69 0.17 -1.19 16 27 C 0.11 0.84 6.34 86.38 0.55 1.39 16 28 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.11 0.57 7.94 -2.39 -0.02 0.55 16 32 H 0.11 0.57 7.69 -2.38 -0.02 0.55 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.87 7.00 -2.39 -0.02 1.85 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.73 7.58 -2.39 -0.02 1.71 16 38 H 0.41 7.29 8.62 -92.71 -0.80 6.49 16 39 H 0.41 13.21 8.38 -92.71 -0.78 12.43 16 40 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.03 1.35 8.09 -2.38 -0.02 1.33 16 42 H 0.26 13.98 8.32 -92.71 -0.77 13.21 16 43 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 44 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 45 H 0.06 3.13 8.14 -2.38 -0.02 3.11 16 46 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 47 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 49 H 0.13 0.10 5.93 -2.39 -0.01 0.09 16 50 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -78.38 409.60 0.18 -78.20 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: -0.63 Total: 29.43 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 7.03 Total: 16.90 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -7.10 Total: -111.94 kcal Atomic # 8 Polarization: -54.69 SS G_CDS: -1.14 Total: -55.83 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -78.38 0.18 -78.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430444903.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.441 kcal (2) G-P(sol) polarization free energy of solvation -78.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds