Wall clock time and date at job start Sat Apr 11 2020 05:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00165 * 2 1 4 4 C 1.52994 * 109.47427 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.46924 * 64.99400 * 4 3 2 6 6 C 1.42901 * 114.00050 * 180.02562 * 5 4 3 7 7 H 1.09006 * 110.64790 * 328.30769 * 6 5 4 8 8 C 1.54597 * 110.72350 * 91.45779 * 6 5 4 9 9 C 1.53995 * 105.14118 * 140.31685 * 8 6 5 10 10 N 1.47904 * 107.05749 * 1.22618 * 9 8 6 11 11 C 1.46897 * 111.00102 * 214.15636 * 10 9 8 12 12 C 1.50694 * 109.47233 * 176.63961 * 11 10 9 13 13 O 1.21281 * 120.00241 * 6.11323 * 12 11 10 14 14 N 1.34774 * 120.00031 * 186.11457 * 12 11 10 15 15 C 1.46494 * 120.00393 * 180.02562 * 14 12 11 16 16 C 1.50704 * 109.47251 * 269.99862 * 15 14 12 17 17 H 1.07999 * 119.99595 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00187 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00144 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00100 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47303 * 89.99820 * 20 18 16 22 22 H 1.48504 * 109.47270 * 209.99678 * 20 18 16 23 23 H 1.48504 * 109.47208 * 329.99690 * 20 18 16 24 24 C 1.46510 * 119.99910 * 359.97438 * 14 12 11 25 25 C 1.52997 * 109.47189 * 90.00332 * 24 14 12 26 26 C 1.47196 * 109.47028 * 180.02562 * 25 24 14 27 27 N 8.82346 * 114.94371 * 110.60079 * 5 1 2 28 28 C 1.48530 * 105.81856 * 334.67221 * 10 9 8 29 29 H 1.08996 * 109.47385 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46849 * 300.00439 * 1 2 3 31 31 H 1.09002 * 109.47125 * 59.99828 * 1 2 3 32 32 H 1.08998 * 109.47300 * 59.99789 * 3 2 1 33 33 H 1.09004 * 109.46812 * 300.00074 * 3 2 1 34 34 H 1.09002 * 109.47039 * 305.00408 * 4 3 2 35 35 H 1.08991 * 109.47706 * 184.99722 * 4 3 2 36 36 H 1.08995 * 110.30863 * 21.39822 * 8 6 5 37 37 H 1.09001 * 110.39351 * 259.27486 * 8 6 5 38 38 H 1.09001 * 109.91558 * 241.87056 * 9 8 6 39 39 H 1.08997 * 110.08207 * 120.66858 * 9 8 6 40 40 H 1.09007 * 109.46964 * 56.63814 * 11 10 9 41 41 H 1.09003 * 109.47259 * 296.64348 * 11 10 9 42 42 H 1.09002 * 109.46986 * 29.99418 * 15 14 12 43 43 H 1.09001 * 109.47690 * 149.99851 * 15 14 12 44 44 H 0.96996 * 120.00212 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.47054 * 329.99852 * 24 14 12 46 46 H 1.09000 * 109.46668 * 210.00189 * 24 14 12 47 47 H 1.09003 * 109.47111 * 59.99446 * 25 24 14 48 48 H 1.09001 * 109.46784 * 299.99867 * 25 24 14 49 49 H 1.08999 * 110.66903 * 157.64585 * 28 10 9 50 50 H 1.09004 * 110.66498 * 280.77123 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5791 -1.2201 6 6 5.3821 0.4185 -1.3216 7 1 5.8986 1.2186 -0.7912 8 6 5.8159 -0.9640 -0.7826 9 6 6.9154 -1.4450 -1.7476 10 7 7.1083 -0.3770 -2.7525 11 6 7.4438 -0.9439 -4.0655 12 6 7.5513 0.1660 -5.0792 13 8 7.4769 1.3227 -4.7222 14 7 7.7302 -0.1268 -6.3825 15 6 7.8353 0.9520 -7.3679 16 6 6.4631 1.2894 -7.8918 17 1 5.5993 0.7534 -7.5275 18 6 6.3106 2.2822 -8.8362 19 7 5.1131 2.5769 -9.2931 20 14 7.8049 3.2088 -9.4670 21 1 8.3572 2.5081 -10.6541 22 1 7.4079 4.5884 -9.8469 23 1 8.8377 3.2666 -8.4014 24 6 7.8206 -1.5241 -6.8137 25 6 6.4224 -2.0448 -7.1524 26 6 6.5133 -3.4489 -7.5850 27 7 6.5808 -4.5296 -7.9221 28 6 5.8231 0.3656 -2.8059 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8507 0.5684 0.8427 35 1 3.9785 2.1764 0.0902 36 1 4.9737 -1.6557 -0.7938 37 1 6.2140 -0.8700 0.2277 38 1 6.6010 -2.3654 -2.2396 39 1 7.8441 -1.6140 -1.2025 40 1 6.6628 -1.6404 -4.3707 41 1 8.3958 -1.4709 -4.0012 42 1 8.2711 1.8332 -6.8969 43 1 8.4702 0.6298 -8.1933 44 1 5.0059 3.2752 -9.9577 45 1 8.2477 -2.1251 -6.0109 46 1 8.4571 -1.5915 -7.6960 47 1 5.9954 -1.4437 -7.9551 48 1 5.7861 -1.9773 -6.2700 49 1 5.9757 1.3711 -3.1979 50 1 5.0910 -0.1752 -3.4056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444757655.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:53 Heat of formation + Delta-G solvation = -103.181086 kcal Electronic energy + Delta-G solvation = -30100.396198 eV Core-core repulsion = 25934.845239 eV Total energy + Delta-G solvation = -4165.550959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.16020 -39.98132 -38.88713 -38.03176 -37.51119 -36.64290 -34.74206 -32.90400 -32.22278 -31.11951 -30.06072 -29.24089 -27.29373 -27.04685 -25.11283 -24.06306 -23.57148 -22.21717 -21.77153 -19.97406 -19.19594 -18.29165 -18.19790 -18.04828 -17.61174 -17.12693 -16.90023 -16.56588 -16.33961 -16.15845 -15.94914 -15.55987 -15.43508 -15.23704 -14.87132 -14.78177 -14.40105 -14.29588 -14.04738 -13.94462 -13.78369 -13.55154 -13.39394 -13.27758 -13.11485 -12.92227 -12.77425 -12.66663 -12.43934 -12.35582 -12.30268 -12.23995 -11.99909 -11.94958 -11.82671 -11.56161 -11.46354 -10.71621 -10.65391 -10.53245 -10.42411 -9.48511 -9.34704 -8.23375 -6.26019 1.38340 1.43242 1.52252 1.66026 1.82872 1.93786 2.19122 2.39194 2.50953 2.85829 3.05076 3.12459 3.29331 3.64643 3.68983 3.85398 4.05192 4.05403 4.11919 4.16325 4.22957 4.27992 4.32797 4.39219 4.45308 4.46704 4.54408 4.55512 4.59225 4.67891 4.72255 4.80290 4.82616 4.85626 4.87130 4.90049 5.00557 5.08422 5.13046 5.16201 5.19038 5.56159 5.68196 5.77382 5.94142 6.19491 6.34325 6.36302 6.58105 6.72646 6.77806 7.34151 7.51905 8.92386 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008802 B = 0.002997 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3180.231854 B = 9339.636517 C =10341.954540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.059 3.941 4 C 0.058 3.942 5 O -0.396 6.396 6 C 0.086 3.914 7 H 0.080 0.920 8 C -0.144 4.144 9 C 0.039 3.961 10 N -0.509 5.509 11 C 0.033 3.967 12 C 0.504 3.496 13 O -0.567 6.567 14 N -0.597 5.597 15 C 0.221 3.779 16 C -0.523 4.523 17 H 0.046 0.954 18 C 0.013 3.987 19 N -0.945 5.945 20 Si 0.935 3.065 21 H -0.257 1.257 22 H -0.292 1.292 23 H -0.254 1.254 24 C 0.119 3.881 25 C -0.044 4.044 26 C 0.248 3.752 27 N -0.485 5.485 28 C 0.045 3.955 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.140 0.860 42 H 0.020 0.980 43 H 0.052 0.948 44 H 0.264 0.736 45 H 0.118 0.882 46 H 0.100 0.900 47 H 0.108 0.892 48 H 0.116 0.884 49 H 0.070 0.930 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 -8.052 20.391 21.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.018 4.018 4 C -0.018 4.018 5 O -0.315 6.315 6 C 0.028 3.972 7 H 0.098 0.902 8 C -0.183 4.183 9 C -0.088 4.088 10 N -0.235 5.235 11 C -0.097 4.097 12 C 0.292 3.708 13 O -0.445 6.445 14 N -0.329 5.329 15 C 0.099 3.901 16 C -0.561 4.561 17 H 0.064 0.936 18 C -0.185 4.185 19 N -0.586 5.586 20 Si 0.760 3.240 21 H -0.181 1.181 22 H -0.218 1.218 23 H -0.178 1.178 24 C -0.006 4.006 25 C -0.085 4.085 26 C -0.070 4.070 27 N -0.163 5.163 28 C -0.084 4.084 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.157 0.843 42 H 0.038 0.962 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.136 0.864 46 H 0.118 0.882 47 H 0.126 0.874 48 H 0.134 0.866 49 H 0.088 0.912 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.112 -8.833 19.951 21.847 hybrid contribution -0.902 1.174 -0.943 1.756 sum 0.210 -7.659 19.008 20.494 Atomic orbital electron populations 1.22901 0.79746 1.03662 1.00742 1.87901 1.21243 1.28505 1.95583 1.22710 0.92179 0.85068 1.01794 1.22761 0.93695 0.98310 0.87069 1.87960 1.21970 1.82119 1.39478 1.22982 0.80925 0.97875 0.95425 0.90179 1.22869 0.98707 0.96351 1.00325 1.22959 0.99809 0.92925 0.93136 1.64526 1.30093 1.22839 1.06050 1.22390 1.05177 0.94193 0.87988 1.21052 0.75890 0.90602 0.83261 1.90649 1.50307 1.23619 1.79937 1.47887 1.71209 1.07333 1.06452 1.19406 0.95697 0.87151 0.87824 1.21599 0.93643 1.19050 1.21856 0.93621 1.25709 0.98418 0.97598 0.96727 1.70039 1.24167 1.32784 1.31596 0.85890 0.80322 0.78126 0.79692 1.18108 1.21804 1.17756 1.21616 0.94593 0.80817 1.03529 1.19851 1.01509 0.82516 1.04631 1.29013 0.91800 0.94379 0.91765 1.81144 1.10076 1.14103 1.10959 1.23085 0.89571 0.99926 0.95776 0.88874 0.92344 0.94109 0.89021 0.93274 0.91451 0.90205 0.90692 0.88862 0.92040 0.87988 0.89982 0.84269 0.96154 0.93053 0.92704 0.86445 0.88163 0.87385 0.86600 0.91151 0.94674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -9.31 10.67 -144.33 -1.54 -10.85 16 3 C 0.06 1.10 6.32 71.98 0.45 1.55 16 4 C 0.06 1.13 6.19 71.98 0.45 1.58 16 5 O -0.40 -10.85 10.05 -144.33 -1.45 -12.30 16 6 C 0.09 2.16 3.51 31.80 0.11 2.27 16 7 H 0.08 1.87 7.88 -2.38 -0.02 1.85 16 8 C -0.14 -2.73 6.69 31.47 0.21 -2.52 16 9 C 0.04 0.70 6.70 86.45 0.58 1.28 16 10 N -0.51 -13.23 5.11 -887.58 -4.54 -17.77 16 11 C 0.03 0.79 3.77 85.56 0.32 1.11 16 12 C 0.50 17.63 7.31 87.66 0.64 18.27 16 13 O -0.57 -25.90 13.87 -3.03 -0.04 -25.94 16 14 N -0.60 -20.12 2.46 -826.15 -2.03 -22.15 16 15 C 0.22 9.53 4.27 85.64 0.37 9.90 16 16 C -0.52 -27.64 9.48 25.60 0.24 -27.40 16 17 H 0.05 2.64 7.67 -2.91 -0.02 2.62 16 18 C 0.01 0.74 5.47 84.65 0.46 1.20 16 19 N -0.95 -57.22 13.96 21.45 0.30 -56.92 16 20 Si 0.94 42.45 27.47 68.60 1.88 44.34 16 21 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 23 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 24 C 0.12 2.68 5.13 86.38 0.44 3.13 16 25 C -0.04 -1.04 5.97 28.79 0.17 -0.87 16 26 C 0.25 6.19 15.43 89.46 1.38 7.57 16 27 N -0.48 -14.40 18.52 19.98 0.37 -14.03 16 28 C 0.04 1.39 5.31 86.65 0.46 1.85 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 1.30 8.11 -2.39 -0.02 1.28 16 36 H 0.07 1.50 8.07 -2.39 -0.02 1.48 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 0.96 7.68 -2.39 -0.02 0.94 16 39 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.08 1.64 6.70 -2.38 -0.02 1.63 16 41 H 0.14 2.31 7.71 -2.39 -0.02 2.29 16 42 H 0.02 0.98 6.48 -2.39 -0.02 0.97 16 43 H 0.05 1.98 7.32 -2.39 -0.02 1.97 16 44 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 45 H 0.12 1.71 6.61 -2.39 -0.02 1.70 16 46 H 0.10 2.07 7.89 -2.39 -0.02 2.05 16 47 H 0.11 3.29 7.27 -2.39 -0.02 3.27 16 48 H 0.12 2.51 7.12 -2.39 -0.02 2.50 16 49 H 0.07 2.78 6.43 -2.39 -0.02 2.76 16 50 H 0.03 1.18 8.01 -2.38 -0.02 1.16 16 Total: -1.00 -78.34 409.81 1.37 -76.97 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.87 Total: 18.06 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 7.54 Total: 20.59 kcal Atomic # 7 Polarization: -104.97 SS G_CDS: -5.89 Total: -110.87 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -3.03 Total: -49.09 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.88 Total: 44.34 kcal Total: -78.34 1.37 -76.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444757655.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.207 kcal (2) G-P(sol) polarization free energy of solvation -78.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds