Wall clock time and date at job start Sat Apr 11 2020 05:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34639 * 117.00443 * 2 1 4 4 O 1.21512 * 119.99173 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00420 * 179.97438 * 3 2 1 6 6 C 1.46928 * 120.63003 * 180.02562 * 5 3 2 7 7 C 1.53195 * 108.77249 * 233.63500 * 6 5 3 8 8 C 1.53034 * 109.31093 * 305.36222 * 7 6 5 9 9 N 1.46509 * 109.46148 * 181.38857 * 8 7 6 10 10 C 1.34773 * 119.99865 * 155.00230 * 9 8 7 11 11 O 1.21583 * 120.00411 * 5.06565 * 10 9 8 12 12 N 1.34784 * 119.99427 * 185.07294 * 10 9 8 13 13 C 1.46928 * 120.62635 * 174.96149 * 12 10 9 14 14 C 1.53193 * 108.88970 * 233.55142 * 13 12 10 15 15 C 1.53073 * 109.29617 * 305.58179 * 14 13 12 16 16 C 1.50701 * 109.43781 * 181.23498 * 15 14 13 17 17 H 1.07993 * 120.00166 * 239.79065 * 16 15 14 18 18 C 1.37884 * 120.00138 * 59.79866 * 16 15 14 19 19 N 1.31518 * 119.99413 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00239 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47302 * 89.99639 * 20 18 16 22 22 H 1.48500 * 109.46887 * 210.00043 * 20 18 16 23 23 H 1.48507 * 109.47024 * 329.99510 * 20 18 16 24 24 C 1.53038 * 109.65672 * 61.15266 * 15 14 13 25 25 C 1.46924 * 120.63092 * 354.97724 * 12 10 9 26 26 C 1.53044 * 109.53903 * 61.37145 * 8 7 6 27 27 C 1.46924 * 120.62940 * 0.02710 * 5 3 2 28 28 H 1.08997 * 109.47334 * 60.00010 * 1 2 3 29 29 H 1.09004 * 109.47016 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46950 * 299.99387 * 1 2 3 31 31 H 1.08998 * 109.58466 * 113.84823 * 6 5 3 32 32 H 1.09002 * 109.70127 * 353.48869 * 6 5 3 33 33 H 1.08999 * 109.49483 * 185.41372 * 7 6 5 34 34 H 1.08998 * 109.52433 * 65.33605 * 7 6 5 35 35 H 1.09002 * 109.46467 * 301.36115 * 8 7 6 36 36 H 0.97000 * 119.99583 * 335.00308 * 9 8 7 37 37 H 1.08993 * 109.58919 * 353.41619 * 13 12 10 38 38 H 1.09003 * 109.58191 * 113.69594 * 13 12 10 39 39 H 1.08995 * 109.49679 * 65.39393 * 14 13 12 40 40 H 1.09001 * 109.49391 * 185.48607 * 14 13 12 41 41 H 1.09003 * 109.34294 * 301.12826 * 15 14 13 42 42 H 0.97001 * 119.99400 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.48926 * 178.74600 * 24 15 14 44 44 H 1.09003 * 109.52221 * 58.67004 * 24 15 14 45 45 H 1.08997 * 109.58475 * 246.15886 * 25 12 10 46 46 H 1.09000 * 109.58611 * 6.44568 * 25 12 10 47 47 H 1.08991 * 109.49652 * 58.58312 * 26 8 7 48 48 H 1.08998 * 109.49711 * 178.68525 * 26 8 7 49 49 H 1.09001 * 109.58786 * 246.15508 * 27 5 3 50 50 H 1.08999 * 109.58677 * 6.43901 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4014 2.2186 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0906 2.5718 0.0011 7 6 5.0816 2.6101 -1.1665 8 6 6.0234 1.4076 -1.0705 9 7 6.9937 1.4589 -2.1670 10 6 8.1894 0.8505 -2.0377 11 8 8.4279 0.1822 -1.0504 12 7 9.1207 0.9830 -3.0029 13 6 10.4659 0.4186 -2.8276 14 6 11.5016 1.5224 -3.0643 15 6 11.2576 2.1596 -4.4345 16 6 12.2935 3.2254 -4.6835 17 1 11.9873 4.2476 -4.8502 18 6 13.6322 2.8956 -4.6988 19 7 14.0050 1.6509 -4.4955 20 14 14.9161 4.2166 -5.0082 21 1 15.3330 4.8144 -3.7144 22 1 16.0961 3.6127 -5.6776 23 1 14.3399 5.2728 -5.8787 24 6 9.8621 2.7867 -4.4695 25 6 8.8102 1.6949 -4.2501 26 6 5.2124 0.1133 -1.1676 27 6 4.2229 0.0468 0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 4.6275 2.7028 0.9406 32 1 3.3577 3.3703 -0.1154 33 1 5.6622 3.5314 -1.1208 34 1 4.5357 2.5704 -2.1091 35 1 6.5510 1.4347 -0.1171 36 1 6.7756 1.9307 -2.9860 37 1 10.5703 0.0307 -1.8144 38 1 10.6203 -0.3873 -3.5451 39 1 11.4062 2.2829 -2.2893 40 1 12.5034 1.0940 -3.0329 41 1 11.3312 1.3940 -5.2069 42 1 14.9468 1.4189 -4.5059 43 1 9.6997 3.2589 -5.4385 44 1 9.7793 3.5354 -3.6815 45 1 8.8307 0.9948 -5.0852 46 1 7.8211 2.1469 -4.1763 47 1 4.6650 0.0969 -2.1099 48 1 5.8861 -0.7423 -1.1226 49 1 4.7706 -0.0278 0.9400 50 1 3.5756 -0.8226 -0.1151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496939303.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:06 Heat of formation + Delta-G solvation = -106.763974 kcal Electronic energy + Delta-G solvation = -30280.341791 eV Core-core repulsion = 26114.635466 eV Total energy + Delta-G solvation = -4165.706324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.00725 -40.10451 -38.53660 -36.97047 -36.44996 -34.75588 -33.56267 -31.76768 -31.44187 -30.85784 -29.84820 -27.97311 -26.26256 -24.95921 -23.74787 -23.03466 -22.35422 -21.65419 -20.35126 -20.14722 -18.87753 -18.48619 -17.65587 -17.33244 -16.81612 -16.40008 -16.11468 -15.21130 -15.12118 -14.78564 -14.68253 -14.52021 -14.31023 -14.06867 -13.90801 -13.59987 -13.17351 -13.04292 -12.83608 -12.73440 -12.54568 -12.40783 -12.27857 -12.21371 -11.77564 -11.64341 -11.29551 -11.13115 -11.11229 -10.95098 -10.85653 -10.77272 -10.67470 -10.44028 -10.08001 -9.80910 -9.57176 -9.21696 -9.15586 -9.02558 -8.89637 -8.37955 -7.91297 -6.03018 -4.09808 1.81204 2.47583 2.94582 3.27800 3.35092 3.37336 3.52331 3.54181 4.12556 4.39898 4.40536 4.53822 4.67777 4.79686 4.82929 4.87301 4.92912 5.05741 5.13548 5.22690 5.26711 5.37319 5.41305 5.44227 5.51457 5.62346 5.73607 5.75030 5.81664 5.95215 5.98372 6.06212 6.14089 6.26897 6.40552 6.47256 6.58970 6.63860 6.79777 6.95689 6.95989 7.13128 7.22451 7.47590 7.69814 7.91589 7.93018 8.04977 8.28843 8.39005 8.92106 8.93526 9.55287 11.02268 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031751 B = 0.002007 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.659133 B =13949.782907 C =14327.770397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.371 6.371 3 C 0.650 3.350 4 O -0.576 6.576 5 N -0.594 5.594 6 C 0.132 3.868 7 C -0.144 4.144 8 C 0.166 3.834 9 N -0.749 5.749 10 C 0.706 3.294 11 O -0.600 6.600 12 N -0.618 5.618 13 C 0.127 3.873 14 C -0.123 4.123 15 C 0.049 3.951 16 C -0.514 4.514 17 H 0.054 0.946 18 C 0.061 3.939 19 N -0.889 5.889 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.123 4.123 25 C 0.113 3.887 26 C -0.146 4.146 27 C 0.115 3.885 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.394 0.606 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.037 0.963 40 H 0.104 0.896 41 H 0.027 0.973 42 H 0.261 0.739 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.076 0.924 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.347 -3.289 6.926 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.404 3.596 4 O -0.465 6.465 5 N -0.334 5.334 6 C 0.010 3.990 7 C -0.183 4.183 8 C 0.060 3.940 9 N -0.407 5.407 10 C 0.408 3.592 11 O -0.480 6.480 12 N -0.354 5.354 13 C 0.005 3.995 14 C -0.162 4.162 15 C 0.031 3.969 16 C -0.552 4.552 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.719 3.281 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.162 4.162 25 C -0.010 4.010 26 C -0.185 4.185 27 C -0.008 4.008 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.231 0.769 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.122 0.878 41 H 0.045 0.955 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.106 0.894 49 H 0.094 0.906 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.244 -3.604 7.648 24.734 hybrid contribution 0.572 0.974 -0.707 1.333 sum -22.672 -2.630 6.941 23.856 Atomic orbital electron populations 1.23198 0.74447 1.03484 1.02709 1.86240 1.24118 1.31031 1.87030 1.18031 0.83163 0.82130 0.76241 1.90989 1.64247 1.34954 1.56312 1.46992 1.01903 1.08798 1.75724 1.21611 0.95002 0.83777 0.98579 1.22257 0.97332 0.99150 0.99521 1.20680 0.88286 0.93594 0.91467 1.45358 1.15763 1.59758 1.19782 1.15866 0.80088 0.80049 0.83240 1.90856 1.80105 1.45295 1.31704 1.47464 1.12790 1.58152 1.16994 1.21764 0.79566 0.96839 1.01339 1.22034 0.99284 0.95954 0.98880 1.18624 0.89515 0.95362 0.93411 1.21180 0.90994 0.94600 1.48409 0.92771 1.24969 0.98585 0.95305 0.95144 1.69846 1.16270 1.16887 1.49832 0.86617 0.81237 0.81934 0.78325 1.20750 1.21252 1.20014 1.22006 0.97097 0.96499 1.00566 1.21706 0.97947 0.95208 0.86127 1.22383 0.97927 0.99807 0.98430 1.21772 0.93493 0.86241 0.99271 0.91872 0.87954 0.91870 0.90387 0.88085 0.89267 0.90775 0.89237 0.76895 0.90611 0.92636 0.94429 0.87815 0.95520 0.92943 0.92195 0.92896 0.91946 0.92318 0.91414 0.89379 0.90560 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 10.56 101.05 1.07 1.43 16 2 O -0.37 -3.50 9.20 -40.32 -0.37 -3.87 16 3 C 0.65 7.23 8.43 54.05 0.46 7.68 16 4 O -0.58 -7.87 15.55 -19.28 -0.30 -8.17 16 5 N -0.59 -5.57 2.97 -178.53 -0.53 -6.10 16 6 C 0.13 1.09 6.43 -3.71 -0.02 1.06 16 7 C -0.14 -1.16 5.55 -26.61 -0.15 -1.30 16 8 C 0.17 1.72 2.38 -67.88 -0.16 1.56 16 9 N -0.75 -9.33 4.99 -58.63 -0.29 -9.62 16 10 C 0.71 11.95 8.26 -86.91 -0.72 11.24 16 11 O -0.60 -12.01 15.43 5.29 0.08 -11.93 16 12 N -0.62 -10.82 2.97 -178.50 -0.53 -11.35 16 13 C 0.13 2.51 6.41 -3.71 -0.02 2.49 16 14 C -0.12 -2.80 5.16 -26.59 -0.14 -2.93 16 15 C 0.05 1.15 2.06 -91.71 -0.19 0.96 16 16 C -0.51 -13.48 8.56 -34.44 -0.29 -13.77 16 17 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 19 N -0.89 -24.51 11.30 55.43 0.63 -23.88 16 20 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.12 -2.30 5.30 -26.62 -0.14 -2.44 16 25 C 0.11 1.75 6.43 -3.71 -0.02 1.72 16 26 C -0.15 -1.40 5.65 -26.59 -0.15 -1.55 16 27 C 0.12 0.96 6.45 -3.69 -0.02 0.93 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.89 7.01 -51.93 -0.36 0.53 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 1.08 7.65 -51.93 -0.40 0.68 16 36 H 0.39 4.19 6.06 -40.82 -0.25 3.95 16 37 H 0.08 1.54 7.03 -51.93 -0.37 1.17 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 2.64 6.03 -51.93 -0.31 2.33 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.06 0.70 5.56 -51.93 -0.29 0.42 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 49 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.09 0.73 6.93 -51.93 -0.36 0.37 16 LS Contribution 390.60 15.07 5.89 5.89 Total: -1.00 -32.23 390.60 -9.27 -41.51 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.22 Total: 3.17 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -0.61 Total: 8.61 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.73 Total: -50.95 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.59 Total: -23.97 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.23 -9.27 -41.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496939303.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.259 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds