Wall clock time and date at job start Sat Apr 11 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34639 * 117.00443 * 2 1 4 4 O 1.21512 * 119.99173 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00420 * 179.97438 * 3 2 1 6 6 C 1.46928 * 120.63003 * 180.02562 * 5 3 2 7 7 C 1.53195 * 108.77249 * 233.63500 * 6 5 3 8 8 C 1.53034 * 109.31093 * 305.36222 * 7 6 5 9 9 N 1.46509 * 109.46148 * 181.38857 * 8 7 6 10 10 C 1.34773 * 119.99865 * 155.00230 * 9 8 7 11 11 O 1.21583 * 120.00411 * 5.06565 * 10 9 8 12 12 N 1.34784 * 119.99427 * 185.07294 * 10 9 8 13 13 C 1.46928 * 120.62635 * 174.96149 * 12 10 9 14 14 C 1.53193 * 108.88970 * 233.55142 * 13 12 10 15 15 C 1.53073 * 109.29617 * 305.58179 * 14 13 12 16 16 C 1.50701 * 109.43781 * 181.23498 * 15 14 13 17 17 H 1.07993 * 120.00166 * 239.79065 * 16 15 14 18 18 C 1.37884 * 120.00138 * 59.79866 * 16 15 14 19 19 N 1.31518 * 119.99413 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00239 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47302 * 89.99639 * 20 18 16 22 22 H 1.48500 * 109.46887 * 210.00043 * 20 18 16 23 23 H 1.48507 * 109.47024 * 329.99510 * 20 18 16 24 24 C 1.53038 * 109.65672 * 61.15266 * 15 14 13 25 25 C 1.46924 * 120.63092 * 354.97724 * 12 10 9 26 26 C 1.53044 * 109.53903 * 61.37145 * 8 7 6 27 27 C 1.46924 * 120.62940 * 0.02710 * 5 3 2 28 28 H 1.08997 * 109.47334 * 60.00010 * 1 2 3 29 29 H 1.09004 * 109.47016 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46950 * 299.99387 * 1 2 3 31 31 H 1.08998 * 109.58466 * 113.84823 * 6 5 3 32 32 H 1.09002 * 109.70127 * 353.48869 * 6 5 3 33 33 H 1.08999 * 109.49483 * 185.41372 * 7 6 5 34 34 H 1.08998 * 109.52433 * 65.33605 * 7 6 5 35 35 H 1.09002 * 109.46467 * 301.36115 * 8 7 6 36 36 H 0.97000 * 119.99583 * 335.00308 * 9 8 7 37 37 H 1.08993 * 109.58919 * 353.41619 * 13 12 10 38 38 H 1.09003 * 109.58191 * 113.69594 * 13 12 10 39 39 H 1.08995 * 109.49679 * 65.39393 * 14 13 12 40 40 H 1.09001 * 109.49391 * 185.48607 * 14 13 12 41 41 H 1.09003 * 109.34294 * 301.12826 * 15 14 13 42 42 H 0.97001 * 119.99400 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.48926 * 178.74600 * 24 15 14 44 44 H 1.09003 * 109.52221 * 58.67004 * 24 15 14 45 45 H 1.08997 * 109.58475 * 246.15886 * 25 12 10 46 46 H 1.09000 * 109.58611 * 6.44568 * 25 12 10 47 47 H 1.08991 * 109.49652 * 58.58312 * 26 8 7 48 48 H 1.08998 * 109.49711 * 178.68525 * 26 8 7 49 49 H 1.09001 * 109.58786 * 246.15508 * 27 5 3 50 50 H 1.08999 * 109.58677 * 6.43901 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4014 2.2186 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0906 2.5718 0.0011 7 6 5.0816 2.6101 -1.1665 8 6 6.0234 1.4076 -1.0705 9 7 6.9937 1.4589 -2.1670 10 6 8.1894 0.8505 -2.0377 11 8 8.4279 0.1822 -1.0504 12 7 9.1207 0.9830 -3.0029 13 6 10.4659 0.4186 -2.8276 14 6 11.5016 1.5224 -3.0643 15 6 11.2576 2.1596 -4.4345 16 6 12.2935 3.2254 -4.6835 17 1 11.9873 4.2476 -4.8502 18 6 13.6322 2.8956 -4.6988 19 7 14.0050 1.6509 -4.4955 20 14 14.9161 4.2166 -5.0082 21 1 15.3330 4.8144 -3.7144 22 1 16.0961 3.6127 -5.6776 23 1 14.3399 5.2728 -5.8787 24 6 9.8621 2.7867 -4.4695 25 6 8.8102 1.6949 -4.2501 26 6 5.2124 0.1133 -1.1676 27 6 4.2229 0.0468 0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 4.6275 2.7028 0.9406 32 1 3.3577 3.3703 -0.1154 33 1 5.6622 3.5314 -1.1208 34 1 4.5357 2.5704 -2.1091 35 1 6.5510 1.4347 -0.1171 36 1 6.7756 1.9307 -2.9860 37 1 10.5703 0.0307 -1.8144 38 1 10.6203 -0.3873 -3.5451 39 1 11.4062 2.2829 -2.2893 40 1 12.5034 1.0940 -3.0329 41 1 11.3312 1.3940 -5.2069 42 1 14.9468 1.4189 -4.5059 43 1 9.6997 3.2589 -5.4385 44 1 9.7793 3.5354 -3.6815 45 1 8.8307 0.9948 -5.0852 46 1 7.8211 2.1469 -4.1763 47 1 4.6650 0.0969 -2.1099 48 1 5.8861 -0.7423 -1.1226 49 1 4.7706 -0.0278 0.9400 50 1 3.5756 -0.8226 -0.1151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496939303.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:05 Heat of formation + Delta-G solvation = -126.886797 kcal Electronic energy + Delta-G solvation = -30281.214382 eV Core-core repulsion = 26114.635466 eV Total energy + Delta-G solvation = -4166.578916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.83140 -41.32776 -39.46027 -38.34063 -37.34997 -35.81535 -35.31272 -33.12606 -32.40019 -32.13086 -31.27138 -28.59541 -27.93887 -25.94431 -24.62780 -24.44383 -23.83897 -22.59732 -21.63774 -21.13096 -20.23750 -19.39703 -18.88201 -18.29570 -18.13325 -17.56210 -17.35163 -16.53929 -16.40826 -15.89831 -15.74957 -15.45958 -15.27170 -15.04069 -14.95922 -14.87275 -14.52972 -14.42600 -14.10712 -13.94293 -13.75206 -13.45118 -13.37097 -13.04220 -12.93911 -12.87777 -12.78108 -12.45715 -12.32813 -12.14288 -12.09778 -11.91503 -11.79251 -11.65836 -11.62006 -11.40345 -11.26559 -10.91043 -10.77756 -10.39233 -10.14376 -9.90218 -9.35613 -8.05917 -6.19640 1.13368 1.41989 1.43944 1.52553 1.62515 1.75363 2.20333 2.45025 2.86857 2.95111 3.20664 3.65952 3.80499 3.99215 4.03249 4.13555 4.26278 4.28614 4.32589 4.35535 4.37419 4.38225 4.49659 4.54929 4.63484 4.69004 4.73239 4.75309 4.76896 4.81529 4.92851 4.93520 5.00766 5.05828 5.19892 5.21706 5.25893 5.27647 5.42457 5.49762 5.53378 5.59479 5.68512 6.00595 6.10599 6.15297 6.19957 6.40423 6.92228 7.04972 7.14789 7.48403 7.61563 8.97264 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031751 B = 0.002007 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.659133 B =13949.782907 C =14327.770397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.374 6.374 3 C 0.646 3.354 4 O -0.606 6.606 5 N -0.591 5.591 6 C 0.131 3.869 7 C -0.131 4.131 8 C 0.163 3.837 9 N -0.731 5.731 10 C 0.704 3.296 11 O -0.634 6.634 12 N -0.623 5.623 13 C 0.140 3.860 14 C -0.111 4.111 15 C 0.045 3.955 16 C -0.531 4.531 17 H 0.053 0.947 18 C 0.012 3.988 19 N -0.915 5.915 20 Si 0.949 3.051 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.267 1.267 24 C -0.115 4.115 25 C 0.118 3.882 26 C -0.137 4.137 27 C 0.120 3.880 28 H 0.060 0.940 29 H 0.134 0.866 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.407 0.593 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.021 0.979 40 H 0.072 0.928 41 H 0.002 0.998 42 H 0.260 0.740 43 H 0.072 0.928 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.102 0.898 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.083 0.917 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.286 -2.631 6.558 26.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.287 6.287 3 C 0.401 3.599 4 O -0.498 6.498 5 N -0.331 5.331 6 C 0.009 3.991 7 C -0.169 4.169 8 C 0.058 3.942 9 N -0.389 5.389 10 C 0.406 3.594 11 O -0.516 6.516 12 N -0.359 5.359 13 C 0.017 3.983 14 C -0.150 4.150 15 C 0.026 3.974 16 C -0.569 4.569 17 H 0.071 0.929 18 C -0.187 4.187 19 N -0.555 5.555 20 Si 0.776 3.224 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.192 1.192 24 C -0.153 4.153 25 C -0.004 4.004 26 C -0.176 4.176 27 C -0.002 4.002 28 H 0.079 0.921 29 H 0.152 0.848 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.245 0.755 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.040 0.960 40 H 0.090 0.910 41 H 0.020 0.980 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.120 0.880 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.101 0.899 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -25.225 -2.931 7.262 26.413 hybrid contribution 1.143 0.746 -0.573 1.480 sum -24.083 -2.184 6.689 25.090 Atomic orbital electron populations 1.23483 0.72895 1.05541 1.02518 1.86247 1.25678 1.30112 1.86701 1.18223 0.83536 0.82188 0.75966 1.90964 1.64986 1.36026 1.57856 1.47097 1.01554 1.09445 1.74994 1.21694 0.94843 0.83274 0.99271 1.22159 0.96680 0.98309 0.99775 1.20833 0.88086 0.95238 0.90049 1.45236 1.14439 1.58438 1.20743 1.15996 0.80975 0.80024 0.82446 1.90836 1.80948 1.46818 1.32976 1.47398 1.11969 1.58488 1.18033 1.21382 0.80405 0.95686 1.00839 1.21782 0.98730 0.96177 0.98269 1.18611 0.91948 0.94310 0.92510 1.21593 0.92037 0.95251 1.48020 0.92895 1.25711 1.00600 0.97119 0.95231 1.69982 1.16429 1.18420 1.50639 0.85687 0.78883 0.79702 0.78139 1.20662 1.21133 1.19198 1.21856 0.95193 0.97172 1.01125 1.21787 0.98836 0.94330 0.85449 1.22258 0.97628 0.98514 0.99246 1.21766 0.93205 0.86211 0.99031 0.92128 0.84794 0.92052 0.89242 0.88467 0.88146 0.90040 0.90795 0.75461 0.91450 0.92496 0.96010 0.91008 0.97973 0.93117 0.90962 0.93379 0.91015 0.87982 0.90847 0.91183 0.89922 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.55 10.56 113.37 1.20 1.75 16 2 O -0.37 -6.45 9.20 -55.49 -0.51 -6.96 16 3 C 0.65 13.46 8.43 129.79 1.09 14.56 16 4 O -0.61 -16.03 15.55 19.80 0.31 -15.72 16 5 N -0.59 -10.00 2.97 -949.16 -2.82 -12.82 16 6 C 0.13 1.88 6.43 86.36 0.56 2.44 16 7 C -0.13 -1.74 5.55 30.67 0.17 -1.57 16 8 C 0.16 3.05 2.38 45.02 0.11 3.16 16 9 N -0.73 -16.36 4.99 -457.67 -2.28 -18.64 16 10 C 0.70 22.81 8.26 179.05 1.48 24.29 16 11 O -0.63 -25.08 15.43 -3.98 -0.06 -25.15 16 12 N -0.62 -21.02 2.97 -836.92 -2.49 -23.51 16 13 C 0.14 5.60 6.41 86.36 0.55 6.15 16 14 C -0.11 -5.17 5.16 30.68 0.16 -5.01 16 15 C 0.04 2.10 2.06 -11.50 -0.02 2.08 16 16 C -0.53 -28.07 8.56 25.60 0.22 -27.85 16 17 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 18 C 0.01 0.65 5.30 84.66 0.45 1.10 16 19 N -0.91 -51.62 11.30 21.45 0.24 -51.38 16 20 Si 0.95 42.83 29.54 68.60 2.03 44.85 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 C -0.12 -4.12 5.30 30.67 0.16 -3.96 16 25 C 0.12 3.33 6.43 86.36 0.56 3.89 16 26 C -0.14 -2.37 5.65 30.69 0.17 -2.19 16 27 C 0.12 1.79 6.45 86.38 0.56 2.34 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.70 8.14 -2.38 -0.02 0.69 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 1.55 7.01 -2.39 -0.02 1.53 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.68 7.65 -2.39 -0.02 1.66 16 36 H 0.41 7.09 6.06 -92.71 -0.56 6.53 16 37 H 0.07 2.79 7.03 -2.39 -0.02 2.78 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 3.82 6.03 -2.39 -0.01 3.81 16 41 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 43 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 44 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.10 2.00 5.56 -2.39 -0.01 1.99 16 47 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.07 1.51 8.08 -2.39 -0.02 1.50 16 49 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.10 1.39 6.93 -2.39 -0.02 1.37 16 Total: -1.00 -71.10 390.60 2.20 -68.90 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.38 Total: 19.26 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 7.41 Total: 21.16 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -7.35 Total: -106.35 kcal Atomic # 8 Polarization: -47.56 SS G_CDS: -0.26 Total: -47.83 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -71.10 2.20 -68.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496939303.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.986 kcal (2) G-P(sol) polarization free energy of solvation -71.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds