Wall clock time and date at job start Sat Apr 11 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99643 * 2 1 4 4 H 1.48504 * 109.46834 * 269.99954 * 3 2 1 5 5 H 1.48498 * 109.47429 * 30.00037 * 3 2 1 6 6 H 1.48498 * 109.46849 * 150.00371 * 3 2 1 7 7 C 1.37869 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00143 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00294 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47250 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46921 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47060 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47134 * 179.97438 * 12 11 10 14 14 O 1.21277 * 119.99913 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99986 * 179.97438 * 13 12 11 16 16 C 1.46499 * 120.00005 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47153 * 180.02562 * 16 15 13 18 18 H 1.09003 * 110.02018 * 54.95161 * 17 16 15 19 19 C 1.54310 * 110.03799 * 293.54678 * 17 16 15 20 20 C 1.54988 * 104.26936 * 217.21105 * 19 17 16 21 21 C 1.54312 * 102.70343 * 37.33141 * 20 19 17 22 22 C 1.52485 * 110.09827 * 203.81609 * 21 20 19 23 23 C 1.53220 * 109.19851 * 293.48553 * 22 21 20 24 24 O 1.42911 * 109.36345 * 303.48270 * 23 22 21 25 25 C 1.42913 * 114.22280 * 61.64327 * 24 23 22 26 26 C 1.52494 * 110.11281 * 81.62873 * 21 20 19 27 27 C 1.53656 * 104.88045 * 322.72602 * 21 20 19 28 28 H 1.08996 * 110.06373 * 142.24414 * 27 21 20 29 29 O 1.42906 * 110.06118 * 263.74892 * 27 21 20 30 30 H 0.96998 * 120.00187 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47392 * 59.99140 * 9 7 2 32 32 H 1.09003 * 109.46843 * 299.99625 * 9 7 2 33 33 H 1.08996 * 109.47193 * 59.99792 * 10 9 7 34 34 H 1.08995 * 109.46818 * 299.99422 * 10 9 7 35 35 H 1.09008 * 109.47432 * 59.99665 * 11 10 9 36 36 H 1.09003 * 109.47143 * 299.99769 * 11 10 9 37 37 H 1.08997 * 109.47226 * 60.00448 * 12 11 10 38 38 H 1.08995 * 109.47049 * 299.99815 * 12 11 10 39 39 H 0.97002 * 120.00265 * 0.02562 * 15 13 12 40 40 H 1.08996 * 109.47078 * 60.00468 * 16 15 13 41 41 H 1.09003 * 109.47193 * 300.00318 * 16 15 13 42 42 H 1.08998 * 110.47378 * 98.51777 * 19 17 16 43 43 H 1.08996 * 110.58243 * 335.96084 * 19 17 16 44 44 H 1.09001 * 110.76902 * 279.02651 * 20 19 17 45 45 H 1.08998 * 110.76715 * 155.63257 * 20 19 17 46 46 H 1.09006 * 109.49103 * 173.58513 * 22 21 20 47 47 H 1.09000 * 109.54305 * 53.41962 * 22 21 20 48 48 H 1.09002 * 109.49501 * 183.50770 * 23 22 21 49 49 H 1.08996 * 109.48796 * 63.45455 * 23 22 21 50 50 H 1.09007 * 109.49529 * 58.30349 * 25 24 23 51 51 H 1.08998 * 109.49817 * 178.36405 * 25 24 23 52 52 H 1.08997 * 109.51346 * 306.55916 * 26 21 20 53 53 H 1.08997 * 109.51494 * 186.39335 * 26 21 20 54 54 H 0.96700 * 113.99908 * 180.02562 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5516 -2.6364 -0.0001 12 6 6.0616 -4.0789 0.0004 13 6 7.5686 -4.0789 -0.0003 14 8 8.1750 -3.0286 -0.0006 15 7 8.2425 -5.2461 0.0005 16 6 9.7075 -5.2460 0.0004 17 6 10.2175 -6.6885 0.0008 18 1 9.7874 -7.2367 -0.8374 19 6 9.8478 -7.3797 1.3300 20 6 11.0705 -8.2782 1.6464 21 6 12.2584 -7.4121 1.1775 22 6 13.4573 -8.2975 0.8551 23 6 13.9636 -8.9496 2.1459 24 8 14.2761 -7.9323 3.0997 25 6 13.1608 -7.1250 3.4827 26 6 12.6192 -6.3912 2.2514 27 6 11.7549 -6.7047 -0.0902 28 1 12.1380 -5.6849 -0.1266 29 8 12.1696 -7.4264 -1.2518 30 1 -0.4850 0.8400 -0.0004 31 1 3.8746 -0.6807 0.8904 32 1 3.8752 -0.6796 -0.8895 33 1 3.6586 -3.1501 -0.8903 34 1 3.6580 -3.1504 0.8897 35 1 5.9150 -2.1226 0.8899 36 1 5.9149 -2.1226 -0.8901 37 1 5.6983 -4.5931 -0.8894 38 1 5.6983 -4.5924 0.8906 39 1 7.7575 -6.0862 0.0012 40 1 10.0709 -4.7316 0.8900 41 1 10.0708 -4.7328 -0.8900 42 1 8.9505 -7.9862 1.2077 43 1 9.7032 -6.6413 2.1186 44 1 11.0233 -9.2084 1.0802 45 1 11.1366 -8.4784 2.7158 46 1 14.2505 -7.6907 0.4182 47 1 13.1591 -9.0720 0.1485 48 1 14.8582 -9.5342 1.9314 49 1 13.1907 -9.6027 2.5507 50 1 12.3792 -7.7593 3.9011 51 1 13.4777 -6.3975 4.2299 52 1 11.7305 -5.8237 2.5274 53 1 13.3809 -5.7127 1.8675 54 1 11.8823 -7.0289 -2.0852 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588732813.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:28 Heat of formation + Delta-G solvation = -199.211680 kcal Electronic energy + Delta-G solvation = -29721.586871 eV Core-core repulsion = 25655.412057 eV Total energy + Delta-G solvation = -4066.174814 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.224 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.76488 -40.67909 -38.89956 -36.78941 -36.33556 -35.64034 -34.60087 -33.14648 -32.06127 -31.83706 -29.96235 -28.03396 -27.19689 -25.10257 -24.57629 -23.65883 -23.32871 -21.75046 -21.46238 -20.91736 -19.46115 -18.85752 -18.32299 -17.91682 -17.41156 -17.01677 -16.93277 -16.72482 -16.29744 -16.07897 -15.89792 -15.72048 -15.23763 -15.08556 -14.97499 -14.82477 -14.54626 -14.16167 -13.94405 -13.70655 -13.65996 -13.49564 -13.28988 -13.19461 -12.85444 -12.67002 -12.51019 -12.33373 -12.24700 -12.07181 -11.98528 -11.75847 -11.63055 -11.60848 -11.51701 -11.36209 -11.34588 -11.26447 -11.02582 -10.96684 -10.76243 -10.70053 -10.35442 -10.09461 -8.29940 -6.33034 1.34363 1.35935 1.48674 1.66883 2.19672 2.35561 2.96400 3.05492 3.14099 3.37651 3.52458 3.75069 3.85739 3.90037 4.03844 4.07763 4.09257 4.11826 4.16432 4.24875 4.29201 4.39414 4.43379 4.52703 4.56501 4.61528 4.65948 4.68429 4.73833 4.77958 4.79629 4.79965 4.86703 4.89132 4.94313 5.03363 5.05492 5.12332 5.15289 5.20574 5.21592 5.27809 5.32156 5.39312 5.42786 5.48030 5.61001 5.65889 5.68695 6.28197 6.29272 6.56313 6.74975 6.85242 7.28653 7.31941 8.86569 Molecular weight = 339.22amu Principal moments of inertia in cm(-1) A = 0.027183 B = 0.001582 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.814224 B =17695.469797 C =17887.038565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.253 1.253 7 C -0.531 4.531 8 H 0.037 0.963 9 C -0.018 4.018 10 C -0.094 4.094 11 C -0.098 4.098 12 C -0.132 4.132 13 C 0.511 3.489 14 O -0.588 6.588 15 N -0.716 5.716 16 C 0.128 3.872 17 C -0.121 4.121 18 H 0.100 0.900 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.056 4.056 22 C -0.123 4.123 23 C 0.055 3.945 24 O -0.406 6.406 25 C 0.058 3.942 26 C -0.141 4.141 27 C 0.120 3.880 28 H 0.056 0.944 29 O -0.569 6.569 30 H 0.266 0.734 31 H 0.013 0.987 32 H 0.012 0.988 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.417 0.583 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.054 0.946 47 H 0.081 0.919 48 H 0.098 0.902 49 H 0.060 0.940 50 H 0.063 0.937 51 H 0.100 0.900 52 H 0.082 0.918 53 H 0.063 0.937 54 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.832 -23.486 2.548 38.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.176 1.176 7 C -0.569 4.569 8 H 0.056 0.944 9 C -0.055 4.055 10 C -0.132 4.132 11 C -0.136 4.136 12 C -0.171 4.171 13 C 0.300 3.700 14 O -0.468 6.468 15 N -0.369 5.369 16 C 0.004 3.996 17 C -0.140 4.140 18 H 0.118 0.882 19 C -0.155 4.155 20 C -0.151 4.151 21 C -0.056 4.056 22 C -0.160 4.160 23 C -0.021 4.021 24 O -0.326 6.326 25 C -0.018 4.018 26 C -0.179 4.179 27 C 0.060 3.940 28 H 0.074 0.926 29 O -0.377 6.377 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.031 0.969 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.254 0.746 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.073 0.927 47 H 0.100 0.900 48 H 0.116 0.884 49 H 0.078 0.922 50 H 0.081 0.919 51 H 0.118 0.882 52 H 0.101 0.899 53 H 0.082 0.918 54 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 31.582 -23.008 3.063 39.194 hybrid contribution -0.918 1.141 -0.682 1.615 sum 30.664 -21.866 2.382 37.737 Atomic orbital electron populations 1.70060 1.08102 1.28068 1.52862 1.25984 0.95609 1.03359 0.94281 0.85702 0.79389 0.78673 0.79170 1.19242 1.20703 1.17639 1.21556 0.92148 0.93228 1.49999 0.94441 1.19582 0.93875 0.95972 0.96064 1.21344 0.93803 0.96672 1.01368 1.21280 0.94736 0.95903 1.01683 1.21679 0.89903 0.98976 1.06567 1.21145 0.91118 0.83323 0.74462 1.90693 1.71519 1.33296 1.51331 1.45881 1.07199 1.08707 1.75152 1.21418 0.79920 0.96886 1.01351 1.22718 0.96421 0.94135 1.00749 0.88210 1.22444 0.98674 0.98672 0.95680 1.22593 0.92954 0.98018 1.01491 1.20913 0.95812 0.95642 0.93215 1.21781 0.96921 0.99679 0.97652 1.22781 1.01516 0.89621 0.88195 1.87898 1.35415 1.47680 1.61562 1.22735 0.89106 0.94067 0.95926 1.22076 1.01809 0.97959 0.96063 1.22211 0.91420 0.94325 0.86034 0.92640 1.86496 1.79647 1.54935 1.16585 0.92525 0.96835 0.96938 0.92420 0.92420 0.93117 0.93060 0.86607 0.86578 0.74625 0.92541 0.92654 0.89857 0.91356 0.90708 0.90645 0.92682 0.90044 0.88387 0.92180 0.91874 0.88214 0.89945 0.91776 0.75917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.37 13.96 21.44 0.30 -60.07 16 2 C 0.00 0.26 5.47 84.65 0.46 0.72 16 3 Si 0.95 45.87 27.47 68.60 1.88 47.76 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.25 -11.65 6.54 99.48 0.65 -11.00 16 7 C -0.53 -31.25 9.66 25.60 0.25 -31.00 16 8 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16 9 C -0.02 -0.85 4.04 29.85 0.12 -0.73 16 10 C -0.09 -3.57 5.15 30.59 0.16 -3.41 16 11 C -0.10 -3.10 4.50 30.59 0.14 -2.96 16 12 C -0.13 -2.83 5.70 29.85 0.17 -2.66 16 13 C 0.51 11.93 7.83 87.66 0.69 12.61 16 14 O -0.59 -19.64 15.98 -3.02 -0.05 -19.69 16 15 N -0.72 -10.39 5.39 -463.07 -2.49 -12.88 16 16 C 0.13 1.75 4.73 86.38 0.41 2.16 16 17 C -0.12 -1.02 2.79 -10.01 -0.03 -1.05 16 18 H 0.10 0.70 7.96 -2.39 -0.02 0.68 16 19 C -0.12 -0.88 5.66 31.72 0.18 -0.70 16 20 C -0.11 -0.93 4.87 31.72 0.15 -0.78 16 21 C -0.06 -0.58 0.53 -51.85 -0.03 -0.61 16 22 C -0.12 -1.47 4.14 30.50 0.13 -1.34 16 23 C 0.06 0.63 6.65 72.06 0.48 1.11 16 24 O -0.41 -6.36 10.75 -148.98 -1.60 -7.96 16 25 C 0.06 0.66 6.64 72.06 0.48 1.14 16 26 C -0.14 -1.57 4.77 30.50 0.15 -1.42 16 27 C 0.12 1.23 3.35 31.16 0.10 1.33 16 28 H 0.06 0.65 7.36 -2.39 -0.02 0.63 16 29 O -0.57 -5.91 11.64 -148.98 -1.73 -7.64 16 30 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 31 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 32 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 33 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 34 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.05 1.73 8.10 -2.38 -0.02 1.71 16 36 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 37 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.42 3.40 8.31 -92.71 -0.77 2.63 16 40 H 0.06 0.94 8.04 -2.39 -0.02 0.92 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.07 0.61 7.29 -2.39 -0.02 0.59 16 44 H 0.07 0.63 7.98 -2.39 -0.02 0.61 16 45 H 0.08 0.57 6.14 -2.39 -0.01 0.56 16 46 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 47 H 0.08 0.99 7.49 -2.39 -0.02 0.97 16 48 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.06 0.56 7.49 -2.39 -0.02 0.54 16 50 H 0.06 0.58 6.48 -2.38 -0.02 0.56 16 51 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.08 0.84 7.31 -2.39 -0.02 0.82 16 53 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 54 H 0.39 1.59 9.11 -74.06 -0.67 0.92 16 Total: -1.00 -77.68 412.05 -0.31 -77.99 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -0.62 Total: 10.07 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 4.00 Total: -27.58 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -2.19 Total: -72.95 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -3.38 Total: -35.28 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.88 Total: 47.76 kcal Total: -77.68 -0.31 -77.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588732813.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.226 kcal (2) G-P(sol) polarization free energy of solvation -77.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds