Wall clock time and date at job start Sat Apr 11 2020 05:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00075 * 2 1 4 4 H 1.48503 * 109.46867 * 239.99742 * 3 2 1 5 5 H 1.48498 * 109.47179 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47149 * 119.99892 * 3 2 1 7 7 C 1.37880 * 119.99524 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99516 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00425 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46908 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46865 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47384 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47426 * 179.97438 * 12 11 10 14 14 O 1.21276 * 120.00264 * 359.97438 * 13 12 11 15 15 N 1.34778 * 120.00243 * 179.97438 * 13 12 11 16 16 C 1.46495 * 120.00266 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47239 * 179.97438 * 16 15 13 18 18 H 1.09000 * 110.43553 * 307.53632 * 17 16 15 19 19 C 1.55071 * 110.63399 * 70.02466 * 17 16 15 20 20 C 1.54972 * 102.72304 * 156.38363 * 19 17 16 21 21 C 1.53937 * 104.22594 * 322.51608 * 20 19 17 22 22 C 1.52787 * 109.83298 * 263.89204 * 21 20 19 23 23 C 1.53172 * 109.17361 * 294.99516 * 22 21 20 24 24 O 1.42908 * 109.36581 * 303.05347 * 23 22 21 25 25 C 1.42909 * 114.18535 * 61.49791 * 24 23 22 26 26 C 1.52780 * 109.83577 * 142.77674 * 21 20 19 27 27 C 1.53523 * 106.95332 * 23.32830 * 21 20 19 28 28 H 1.09004 * 110.05820 * 119.40079 * 27 21 20 29 29 O 1.42900 * 110.05969 * 240.84192 * 27 21 20 30 30 H 0.97001 * 119.99772 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46901 * 59.99751 * 9 7 2 32 32 H 1.08997 * 109.47063 * 300.00137 * 9 7 2 33 33 H 1.09002 * 109.47562 * 60.00133 * 10 9 7 34 34 H 1.09004 * 109.47052 * 299.99717 * 10 9 7 35 35 H 1.08998 * 109.47938 * 59.99579 * 11 10 9 36 36 H 1.09004 * 109.47272 * 299.99493 * 11 10 9 37 37 H 1.09002 * 109.47288 * 59.99608 * 12 11 10 38 38 H 1.09004 * 109.47426 * 299.99945 * 12 11 10 39 39 H 0.97007 * 119.99613 * 359.97438 * 15 13 12 40 40 H 1.08994 * 109.47340 * 59.99431 * 16 15 13 41 41 H 1.09004 * 109.46829 * 299.99590 * 16 15 13 42 42 H 1.08994 * 110.69499 * 38.12038 * 19 17 16 43 43 H 1.09000 * 110.86665 * 274.72134 * 19 17 16 44 44 H 1.09002 * 110.50255 * 203.79146 * 20 19 17 45 45 H 1.09000 * 110.50464 * 81.23858 * 20 19 17 46 46 H 1.08999 * 109.51992 * 54.89975 * 22 21 20 47 47 H 1.08998 * 109.52404 * 175.08746 * 22 21 20 48 48 H 1.08988 * 109.48890 * 183.08217 * 23 22 21 49 49 H 1.09000 * 109.50581 * 63.02493 * 23 22 21 50 50 H 1.09003 * 109.48503 * 178.54121 * 25 24 23 51 51 H 1.08999 * 109.50867 * 58.48581 * 25 24 23 52 52 H 1.09002 * 109.52462 * 184.91625 * 26 21 20 53 53 H 1.09002 * 109.52106 * 305.03849 * 26 21 20 54 54 H 0.96698 * 113.99986 * 180.02562 * 29 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 6 2.4743 -6.1500 0.0018 13 6 1.7208 -7.4551 0.0018 14 8 0.5081 -7.4552 0.0018 15 7 2.3947 -8.6224 0.0018 16 6 1.6622 -9.8910 0.0013 17 6 2.6564 -11.0540 0.0007 18 1 3.3767 -10.9385 -0.8091 19 6 3.3883 -11.1478 1.3646 20 6 3.8324 -12.6318 1.4123 21 6 2.6621 -13.3977 0.7691 22 6 1.7303 -13.9294 1.8570 23 6 2.4795 -14.9675 2.6979 24 8 2.9624 -16.0083 1.8459 25 6 3.8878 -15.5677 0.8500 26 6 3.1994 -14.5554 -0.0706 27 6 1.9125 -12.4006 -0.1258 28 1 1.9289 -12.7418 -1.1609 29 8 0.5629 -12.2589 0.3218 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8897 32 1 0.6240 -2.5567 0.8903 33 1 2.8712 -3.6040 0.8923 34 1 2.8725 -3.6047 -0.8878 35 1 0.8544 -5.0451 -0.8894 36 1 0.8526 -5.0447 0.8905 37 1 3.1004 -6.0924 0.8922 38 1 3.1017 -6.0923 -0.8877 39 1 3.3647 -8.6223 0.0014 40 1 1.0358 -9.9486 -0.8889 41 1 1.0352 -9.9490 0.8911 42 1 2.7061 -10.9224 2.1842 43 1 4.2534 -10.4851 1.3874 44 1 3.9785 -12.9536 2.4434 45 1 4.7459 -12.7757 0.8353 46 1 1.4092 -13.1065 2.4956 47 1 0.8594 -14.3946 1.3953 48 1 1.8034 -15.3901 3.4409 49 1 3.3204 -14.4901 3.2011 50 1 4.2248 -16.4223 0.2633 51 1 4.7446 -15.0969 1.3321 52 1 2.3745 -15.0401 -0.5929 53 1 3.9176 -14.1756 -0.7974 54 1 0.0368 -11.6414 -0.2045 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588732814.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:31 Heat of formation + Delta-G solvation = -199.157189 kcal Electronic energy + Delta-G solvation = -29612.938272 eV Core-core repulsion = 25546.765821 eV Total energy + Delta-G solvation = -4066.172451 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.224 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.72987 -40.67925 -38.96301 -36.70374 -36.09643 -35.80670 -34.60020 -33.12373 -32.11689 -31.52133 -29.62287 -28.07326 -27.15994 -25.15685 -24.62375 -23.86434 -23.36207 -21.79838 -21.42245 -20.86665 -19.41291 -18.41668 -18.17050 -17.70669 -17.51946 -17.25662 -16.92434 -16.85769 -16.50525 -16.15155 -15.78961 -15.77957 -15.23768 -15.05206 -14.70985 -14.53136 -14.50065 -14.06811 -13.90785 -13.63731 -13.56346 -13.34584 -13.23374 -13.16586 -12.78942 -12.71031 -12.37106 -12.28943 -12.20364 -12.15054 -12.11548 -12.02244 -11.81369 -11.51027 -11.37202 -11.36805 -11.34955 -11.17744 -10.99726 -10.90177 -10.65690 -10.53884 -10.34198 -10.06636 -8.18021 -6.30474 1.40735 1.44784 1.52688 1.67667 2.20034 2.42650 2.98864 3.14527 3.17653 3.41110 3.43355 3.84046 3.87689 3.90632 4.06230 4.09688 4.11422 4.14268 4.16177 4.26828 4.31212 4.42348 4.47444 4.50516 4.61456 4.66457 4.69124 4.70086 4.74708 4.78523 4.84052 4.85979 4.88262 4.90051 4.92359 5.06091 5.09780 5.12859 5.20172 5.22790 5.30579 5.34031 5.36935 5.41783 5.45344 5.49961 5.58038 5.78615 5.88462 6.25684 6.29750 6.57977 6.76849 6.87834 7.30407 7.39166 8.93896 Molecular weight = 339.22amu Principal moments of inertia in cm(-1) A = 0.037230 B = 0.001462 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.903205 B =19151.637391 C =19400.242776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.097 4.097 12 C -0.128 4.128 13 C 0.509 3.491 14 O -0.590 6.590 15 N -0.715 5.715 16 C 0.127 3.873 17 C -0.124 4.124 18 H 0.107 0.893 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.056 4.056 22 C -0.121 4.121 23 C 0.055 3.945 24 O -0.407 6.407 25 C 0.056 3.944 26 C -0.141 4.141 27 C 0.117 3.883 28 H 0.069 0.931 29 O -0.574 6.574 30 H 0.263 0.737 31 H -0.016 1.016 32 H -0.016 1.016 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.417 0.583 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.068 0.932 47 H 0.056 0.944 48 H 0.093 0.907 49 H 0.062 0.938 50 H 0.103 0.897 51 H 0.063 0.937 52 H 0.061 0.939 53 H 0.095 0.905 54 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.933 -35.186 0.587 37.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.168 4.168 13 C 0.298 3.702 14 O -0.470 6.470 15 N -0.368 5.368 16 C 0.003 3.997 17 C -0.143 4.143 18 H 0.125 0.875 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.057 4.057 22 C -0.158 4.158 23 C -0.021 4.021 24 O -0.327 6.327 25 C -0.020 4.020 26 C -0.178 4.178 27 C 0.057 3.943 28 H 0.087 0.913 29 O -0.382 6.382 30 H 0.071 0.929 31 H 0.003 0.997 32 H 0.002 0.998 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.254 0.746 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.106 0.894 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.111 0.889 49 H 0.080 0.920 50 H 0.121 0.879 51 H 0.082 0.918 52 H 0.080 0.920 53 H 0.113 0.887 54 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 13.071 -35.729 1.047 38.059 hybrid contribution -0.348 1.749 -0.427 1.834 sum 12.724 -33.979 0.621 36.289 Atomic orbital electron populations 1.70131 1.08075 1.27786 1.51767 1.26097 0.95781 1.03736 0.94743 0.85430 0.78162 0.77677 0.79335 1.18893 1.21094 1.18924 1.21740 0.93776 0.92244 1.50434 0.91523 1.19064 0.94729 0.93862 0.94289 1.21450 0.97799 0.92737 1.01330 1.21245 0.97548 0.93764 1.00924 1.21667 0.98890 0.89538 1.06685 1.21184 0.87750 0.86808 0.74506 1.90700 1.16564 1.88428 1.51301 1.45839 1.11079 1.04719 1.75151 1.21240 0.94797 0.82320 1.01307 1.22894 0.97745 0.93461 1.00212 0.87479 1.22569 0.99975 0.96945 0.95691 1.22554 0.97224 0.94162 1.01353 1.20995 0.95066 0.94439 0.95154 1.21740 0.98076 0.98494 0.97536 1.22787 0.98094 0.88933 0.92307 1.87897 1.62977 1.34903 1.46911 1.22754 0.91127 0.98622 0.89537 1.22253 1.01321 0.95808 0.98431 1.22425 0.81666 0.93040 0.97160 0.91264 1.86537 1.23073 1.68382 1.60158 0.92885 0.99722 0.99784 0.92074 0.92002 0.93926 0.94053 0.86423 0.86258 0.74583 0.92398 0.92578 0.92643 0.89706 0.90995 0.89389 0.91368 0.92543 0.88891 0.92001 0.87932 0.91843 0.92016 0.88654 0.76640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.11 13.29 21.45 0.28 -58.83 16 2 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.54 -31.60 9.11 25.60 0.23 -31.37 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.02 0.98 4.97 29.85 0.15 1.12 16 10 C -0.10 -3.89 5.15 30.59 0.16 -3.73 16 11 C -0.10 -3.47 4.50 30.59 0.14 -3.33 16 12 C -0.13 -3.02 5.70 29.85 0.17 -2.85 16 13 C 0.51 13.08 7.83 87.66 0.69 13.77 16 14 O -0.59 -21.53 15.98 -3.02 -0.05 -21.58 16 15 N -0.71 -11.47 5.45 -463.07 -2.52 -13.99 16 16 C 0.13 1.93 3.89 86.38 0.34 2.26 16 17 C -0.12 -1.11 2.86 -9.62 -0.03 -1.14 16 18 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 19 C -0.11 -1.00 6.22 31.98 0.20 -0.80 16 20 C -0.12 -0.86 4.78 31.58 0.15 -0.71 16 21 C -0.06 -0.57 0.63 -51.83 -0.03 -0.60 16 22 C -0.12 -1.69 3.90 30.58 0.12 -1.57 16 23 C 0.06 0.70 6.62 72.04 0.48 1.18 16 24 O -0.41 -6.32 10.75 -148.98 -1.60 -7.92 16 25 C 0.06 0.52 6.64 72.04 0.48 1.00 16 26 C -0.14 -1.19 4.55 30.58 0.14 -1.05 16 27 C 0.12 1.24 3.79 31.23 0.12 1.36 16 28 H 0.07 0.63 7.67 -2.38 -0.02 0.61 16 29 O -0.57 -8.50 10.64 -148.98 -1.58 -10.08 16 30 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 31 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 32 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 35 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 36 H 0.04 1.64 8.10 -2.38 -0.02 1.62 16 37 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 39 H 0.42 3.74 8.44 -92.70 -0.78 2.96 16 40 H 0.06 0.95 7.62 -2.39 -0.02 0.93 16 41 H 0.06 1.12 7.57 -2.38 -0.02 1.10 16 42 H 0.05 0.72 7.98 -2.39 -0.02 0.70 16 43 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.07 0.58 6.06 -2.39 -0.01 0.56 16 45 H 0.09 0.39 7.77 -2.39 -0.02 0.37 16 46 H 0.07 1.08 7.96 -2.39 -0.02 1.06 16 47 H 0.06 1.01 7.77 -2.39 -0.02 0.99 16 48 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 49 H 0.06 0.63 6.43 -2.39 -0.02 0.62 16 50 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.06 0.44 7.46 -2.39 -0.02 0.42 16 52 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 53 H 0.10 0.43 8.06 -2.39 -0.02 0.41 16 54 H 0.38 4.41 7.53 -74.06 -0.56 3.85 16 Total: -1.00 -79.32 413.70 0.04 -79.28 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -0.46 Total: 12.75 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 3.95 Total: -26.38 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -2.24 Total: -72.82 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -3.24 Total: -39.58 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -79.32 0.04 -79.28 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588732814.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.878 kcal (2) G-P(sol) polarization free energy of solvation -79.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds