Wall clock time and date at job start Sat Apr 11 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00372 * 2 1 4 4 C 1.52997 * 109.47177 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47154 * 65.00236 * 4 3 2 6 6 C 1.46498 * 119.99776 * 266.54744 * 5 4 3 7 7 C 1.50706 * 109.47243 * 267.81345 * 6 5 4 8 8 H 1.08002 * 119.99857 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00273 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99721 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99948 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47335 * 89.99825 * 11 9 7 13 13 H 1.48502 * 109.47022 * 209.99934 * 11 9 7 14 14 H 1.48498 * 109.47158 * 329.99771 * 11 9 7 15 15 C 1.34774 * 120.00019 * 86.54916 * 5 4 3 16 16 O 1.21283 * 120.00066 * 3.16321 * 15 5 4 17 17 C 1.50703 * 119.99871 * 183.16503 * 15 5 4 18 18 H 1.08996 * 109.47353 * 316.68083 * 17 15 5 19 19 C 1.53007 * 109.46755 * 76.67562 * 17 15 5 20 20 N 1.46494 * 109.47315 * 196.67206 * 17 15 5 21 21 N 1.29020 * 126.44070 * 299.69749 * 20 17 15 22 22 N 1.28741 * 108.80665 * 179.82914 * 21 20 17 23 23 N 1.28840 * 109.39796 * 0.43578 * 22 21 20 24 24 C 1.31069 * 107.99083 * 359.73477 * 23 22 21 25 25 C 1.50700 * 126.65923 * 179.97438 * 24 23 22 26 26 C 1.53002 * 109.46915 * 240.04293 * 25 24 23 27 27 C 1.53004 * 109.47219 * 0.03532 * 25 24 23 28 28 C 1.52999 * 109.47258 * 120.03870 * 25 24 23 29 29 H 1.08996 * 109.46792 * 299.99532 * 1 2 3 30 30 H 1.08993 * 109.47120 * 59.99996 * 1 2 3 31 31 H 1.08999 * 109.46992 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46857 * 59.99723 * 3 2 1 33 33 H 1.09001 * 109.46725 * 300.00267 * 3 2 1 34 34 H 1.08998 * 109.47028 * 304.99394 * 4 3 2 35 35 H 1.09001 * 109.46689 * 184.99835 * 4 3 2 36 36 H 1.09004 * 109.47203 * 27.80895 * 6 5 4 37 37 H 1.09003 * 109.47225 * 147.81619 * 6 5 4 38 38 H 0.97003 * 119.99944 * 179.97438 * 10 9 7 39 39 H 1.08995 * 109.47347 * 56.25836 * 19 17 15 40 40 H 1.09005 * 109.46821 * 176.25826 * 19 17 15 41 41 H 1.09000 * 109.47140 * 296.25647 * 19 17 15 42 42 H 1.08998 * 109.47747 * 59.99255 * 26 25 24 43 43 H 1.08998 * 109.46906 * 180.02562 * 26 25 24 44 44 H 1.09010 * 109.46894 * 299.99667 * 26 25 24 45 45 H 1.09007 * 109.46674 * 60.00552 * 27 25 24 46 46 H 1.08993 * 109.47398 * 179.97438 * 27 25 24 47 47 H 1.08998 * 109.47198 * 300.00983 * 27 25 24 48 48 H 1.08996 * 109.46990 * 60.00010 * 28 25 24 49 49 H 1.08994 * 109.46825 * 179.97438 * 28 25 24 50 50 H 1.08998 * 109.47231 * 299.99958 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1780 -0.8850 -1.3207 7 6 5.6159 -1.2070 -1.0045 8 1 6.3096 -0.4115 -0.7755 9 6 6.0459 -2.5169 -1.0077 10 7 5.2010 -3.4855 -1.2862 11 14 7.8280 -2.9159 -0.6151 12 1 7.9767 -3.1311 0.8466 13 1 8.2308 -4.1476 -1.3404 14 1 8.6933 -1.7862 -1.0397 15 6 4.1946 1.3271 -2.3421 16 8 4.0828 2.5327 -2.2706 17 6 4.5782 0.6821 -3.6489 18 1 5.3215 -0.0940 -3.4667 19 6 3.3381 0.0592 -4.2935 20 7 5.1390 1.6944 -4.5471 21 7 4.5392 2.7513 -4.9804 22 7 5.3458 3.4028 -5.7436 23 7 6.4669 2.7724 -5.8187 24 6 6.3751 1.6936 -5.0799 25 6 7.4454 0.6540 -4.8686 26 6 6.9379 -0.7060 -5.3522 27 6 8.6965 1.0420 -5.6594 28 6 7.7885 0.5706 -3.3799 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8515 0.5682 0.8410 35 1 3.9786 2.1764 0.0889 36 1 3.5280 -1.3769 -0.5970 37 1 3.9385 -1.2387 -2.3236 38 1 5.5036 -4.4072 -1.2888 39 1 2.5695 0.8224 -4.4149 40 1 3.6021 -0.3491 -5.2691 41 1 2.9595 -0.7395 -3.6557 42 1 6.6934 -0.6465 -6.4127 43 1 7.7119 -1.4580 -5.1989 44 1 6.0466 -0.9824 -4.7888 45 1 9.0581 2.0109 -5.3149 46 1 9.4708 0.2903 -5.5062 47 1 8.4520 1.1016 -6.7199 48 1 6.8973 0.2941 -2.8166 49 1 8.5623 -0.1817 -3.2271 50 1 8.1501 1.5394 -3.0355 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612605259.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:56 Heat of formation + Delta-G solvation = 31.277789 kcal Electronic energy + Delta-G solvation = -32831.448340 eV Core-core repulsion = 28704.020707 eV Total energy + Delta-G solvation = -4127.427633 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.85678 -39.75708 -37.64415 -37.20516 -35.48322 -35.19930 -32.84141 -31.84181 -30.95723 -29.65329 -27.43788 -27.29295 -27.19455 -26.13806 -25.17391 -23.61602 -23.40968 -23.04130 -21.79094 -19.87447 -18.91044 -17.21333 -16.96202 -16.66077 -16.37717 -15.93688 -15.83195 -15.46710 -15.15169 -14.77293 -14.62129 -14.34272 -13.97768 -13.88939 -13.36539 -13.18243 -12.74636 -12.52367 -12.41086 -12.29679 -12.24485 -12.16329 -12.00884 -11.86777 -11.68943 -11.63265 -11.57228 -11.54261 -11.35886 -11.11652 -11.05147 -11.01588 -10.80809 -10.69193 -10.61762 -10.48781 -10.30192 -9.90043 -9.68143 -9.51910 -9.21723 -8.71248 -7.99294 -6.35346 -4.44822 1.63439 2.19335 2.62638 2.93803 3.09854 3.19073 3.20559 3.53493 4.01007 4.06419 4.17528 4.49085 4.72864 4.82044 4.91485 4.92926 4.99983 5.12338 5.27192 5.32018 5.37335 5.49390 5.53563 5.55106 5.57139 5.64498 5.70585 5.74393 5.75963 5.78526 5.82918 5.89310 5.92570 5.97371 6.01628 6.09941 6.13774 6.18327 6.22889 6.34363 6.47498 6.55309 6.56674 7.03158 7.30099 7.34948 7.59145 7.85323 8.01278 8.50022 8.68375 9.03085 9.24010 10.70660 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.008563 B = 0.006229 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3268.994686 B = 4494.018050 C = 6867.920321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.377 6.377 3 C 0.047 3.953 4 C 0.124 3.876 5 N -0.577 5.577 6 C 0.228 3.772 7 C -0.551 4.551 8 H 0.063 0.937 9 C 0.073 3.927 10 N -0.882 5.882 11 Si 0.887 3.113 12 H -0.278 1.278 13 H -0.283 1.283 14 H -0.268 1.268 15 C 0.509 3.491 16 O -0.546 6.546 17 C 0.116 3.884 18 H 0.162 0.838 19 C -0.159 4.159 20 N -0.282 5.282 21 N -0.067 5.067 22 N -0.096 5.096 23 N -0.309 5.309 24 C 0.195 3.805 25 C 0.015 3.985 26 C -0.152 4.152 27 C -0.129 4.129 28 C -0.159 4.159 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.038 0.962 38 H 0.267 0.733 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.644 1.398 -2.175 3.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C -0.031 4.031 4 C 0.000 4.000 5 N -0.308 5.308 6 C 0.109 3.891 7 C -0.589 4.589 8 H 0.081 0.919 9 C -0.131 4.131 10 N -0.519 5.519 11 Si 0.714 3.286 12 H -0.204 1.204 13 H -0.209 1.209 14 H -0.193 1.193 15 C 0.293 3.707 16 O -0.425 6.425 17 C 0.011 3.989 18 H 0.179 0.821 19 C -0.217 4.217 20 N -0.084 5.084 21 N -0.052 5.052 22 N -0.090 5.090 23 N -0.158 5.158 24 C -0.083 4.083 25 C 0.011 3.989 26 C -0.210 4.210 27 C -0.187 4.187 28 C -0.217 4.217 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.099 0.901 49 H 0.096 0.904 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.136 2.873 -2.715 4.493 hybrid contribution 0.842 -1.005 0.892 1.586 sum -1.294 1.868 -1.823 2.913 Atomic orbital electron populations 1.22691 0.81943 1.02463 0.99334 1.88024 1.18842 1.27385 1.95258 1.23016 0.94977 0.85014 1.00119 1.21398 0.91277 0.99777 0.87540 1.48073 1.63471 1.10705 1.08524 1.19739 0.97426 0.72695 0.99273 1.21494 0.94787 0.92707 1.49917 0.91895 1.24880 0.97747 0.96001 0.94497 1.69913 1.34681 1.00170 1.47134 0.86666 0.84725 0.78303 0.78946 1.20425 1.20869 1.19280 1.19930 0.78521 0.87065 0.85149 1.90724 1.53121 1.13881 1.84764 1.22129 1.01090 0.88135 0.87588 0.82108 1.22176 0.95282 1.02321 1.01952 1.48183 1.10262 1.17626 1.32317 1.78898 1.21943 0.94863 1.09514 1.78540 0.96035 1.20941 1.13441 1.74891 1.16972 1.04036 1.19875 1.26022 0.88208 0.98463 0.95582 1.19253 0.90813 0.90465 0.98372 1.22095 1.02780 0.94627 1.01449 1.21732 0.94864 1.02044 1.00020 1.22219 1.04308 1.02795 0.92393 0.94625 0.94550 0.89779 0.92928 0.93214 0.88846 0.89417 0.92643 0.94446 0.92288 0.90718 0.90779 0.87783 0.91996 0.90172 0.91470 0.91701 0.91413 0.91705 0.90086 0.90375 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.04 9.93 -35.23 -0.35 -6.39 16 3 C 0.05 0.70 6.26 37.16 0.23 0.93 16 4 C 0.12 2.08 5.78 -4.04 -0.02 2.05 16 5 N -0.58 -10.93 2.41 -175.06 -0.42 -11.36 16 6 C 0.23 4.73 4.61 -5.19 -0.02 4.71 16 7 C -0.55 -12.36 8.04 -34.44 -0.28 -12.64 16 8 H 0.06 1.44 7.41 -52.49 -0.39 1.05 16 9 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 10 N -0.88 -21.60 13.29 55.43 0.74 -20.87 16 11 Si 0.89 18.27 29.54 -169.99 -5.02 13.25 16 12 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 13 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 14 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 15 C 0.51 9.96 6.92 -10.99 -0.08 9.88 16 16 O -0.55 -12.06 15.37 5.56 0.09 -11.97 16 17 C 0.12 2.03 1.41 -69.08 -0.10 1.94 16 18 H 0.16 2.84 2.45 -51.93 -0.13 2.71 16 19 C -0.16 -2.42 9.14 37.16 0.34 -2.08 16 20 N -0.28 -5.23 2.89 -52.93 -0.15 -5.38 16 21 N -0.07 -1.36 12.18 60.35 0.73 -0.63 16 22 N -0.10 -1.98 13.43 60.35 0.81 -1.17 16 23 N -0.31 -5.89 11.71 32.70 0.38 -5.51 16 24 C 0.20 3.42 6.40 -155.43 -1.00 2.42 16 25 C 0.01 0.21 0.75 -155.66 -0.12 0.09 16 26 C -0.15 -1.97 8.31 37.16 0.31 -1.66 16 27 C -0.13 -1.58 8.00 37.16 0.30 -1.28 16 28 C -0.16 -2.46 8.31 37.16 0.31 -2.15 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.56 8.05 -51.93 -0.42 1.14 16 35 H 0.09 1.45 7.48 -51.93 -0.39 1.06 16 36 H 0.06 1.27 7.48 -51.93 -0.39 0.88 16 37 H 0.04 0.78 4.65 -51.93 -0.24 0.53 16 38 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.10 1.56 6.13 -51.93 -0.32 1.24 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.94 5.58 -51.92 -0.29 0.65 16 45 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.08 1.43 4.30 -51.93 -0.22 1.20 16 49 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 398.29 15.07 6.00 6.00 Total: -1.00 -28.66 398.29 -4.14 -32.80 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -7.84 Total: 5.89 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 0.89 Total: 5.33 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 2.09 Total: -44.91 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.26 Total: -18.36 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.02 Total: 13.25 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -28.66 -4.14 -32.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612605259.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.080 kcal (2) G-P(sol) polarization free energy of solvation -28.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds