Wall clock time and date at job start Sat Apr 11 2020 05:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00372 * 2 1 4 4 C 1.52997 * 109.47177 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47154 * 65.00236 * 4 3 2 6 6 C 1.46498 * 119.99776 * 266.54744 * 5 4 3 7 7 C 1.50706 * 109.47243 * 267.81345 * 6 5 4 8 8 H 1.08002 * 119.99857 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00273 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99721 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99948 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47335 * 89.99825 * 11 9 7 13 13 H 1.48502 * 109.47022 * 209.99934 * 11 9 7 14 14 H 1.48498 * 109.47158 * 329.99771 * 11 9 7 15 15 C 1.34774 * 120.00019 * 86.54916 * 5 4 3 16 16 O 1.21283 * 120.00066 * 3.16321 * 15 5 4 17 17 C 1.50703 * 119.99871 * 183.16503 * 15 5 4 18 18 H 1.08996 * 109.47353 * 316.68083 * 17 15 5 19 19 C 1.53007 * 109.46755 * 76.67562 * 17 15 5 20 20 N 1.46494 * 109.47315 * 196.67206 * 17 15 5 21 21 N 1.29020 * 126.44070 * 299.69749 * 20 17 15 22 22 N 1.28741 * 108.80665 * 179.82914 * 21 20 17 23 23 N 1.28840 * 109.39796 * 0.43578 * 22 21 20 24 24 C 1.31069 * 107.99083 * 359.73477 * 23 22 21 25 25 C 1.50700 * 126.65923 * 179.97438 * 24 23 22 26 26 C 1.53002 * 109.46915 * 240.04293 * 25 24 23 27 27 C 1.53004 * 109.47219 * 0.03532 * 25 24 23 28 28 C 1.52999 * 109.47258 * 120.03870 * 25 24 23 29 29 H 1.08996 * 109.46792 * 299.99532 * 1 2 3 30 30 H 1.08993 * 109.47120 * 59.99996 * 1 2 3 31 31 H 1.08999 * 109.46992 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46857 * 59.99723 * 3 2 1 33 33 H 1.09001 * 109.46725 * 300.00267 * 3 2 1 34 34 H 1.08998 * 109.47028 * 304.99394 * 4 3 2 35 35 H 1.09001 * 109.46689 * 184.99835 * 4 3 2 36 36 H 1.09004 * 109.47203 * 27.80895 * 6 5 4 37 37 H 1.09003 * 109.47225 * 147.81619 * 6 5 4 38 38 H 0.97003 * 119.99944 * 179.97438 * 10 9 7 39 39 H 1.08995 * 109.47347 * 56.25836 * 19 17 15 40 40 H 1.09005 * 109.46821 * 176.25826 * 19 17 15 41 41 H 1.09000 * 109.47140 * 296.25647 * 19 17 15 42 42 H 1.08998 * 109.47747 * 59.99255 * 26 25 24 43 43 H 1.08998 * 109.46906 * 180.02562 * 26 25 24 44 44 H 1.09010 * 109.46894 * 299.99667 * 26 25 24 45 45 H 1.09007 * 109.46674 * 60.00552 * 27 25 24 46 46 H 1.08993 * 109.47398 * 179.97438 * 27 25 24 47 47 H 1.08998 * 109.47198 * 300.00983 * 27 25 24 48 48 H 1.08996 * 109.46990 * 60.00010 * 28 25 24 49 49 H 1.08994 * 109.46825 * 179.97438 * 28 25 24 50 50 H 1.08998 * 109.47231 * 299.99958 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1780 -0.8850 -1.3207 7 6 5.6159 -1.2070 -1.0045 8 1 6.3096 -0.4115 -0.7755 9 6 6.0459 -2.5169 -1.0077 10 7 5.2010 -3.4855 -1.2862 11 14 7.8280 -2.9159 -0.6151 12 1 7.9767 -3.1311 0.8466 13 1 8.2308 -4.1476 -1.3404 14 1 8.6933 -1.7862 -1.0397 15 6 4.1946 1.3271 -2.3421 16 8 4.0828 2.5327 -2.2706 17 6 4.5782 0.6821 -3.6489 18 1 5.3215 -0.0940 -3.4667 19 6 3.3381 0.0592 -4.2935 20 7 5.1390 1.6944 -4.5471 21 7 4.5392 2.7513 -4.9804 22 7 5.3458 3.4028 -5.7436 23 7 6.4669 2.7724 -5.8187 24 6 6.3751 1.6936 -5.0799 25 6 7.4454 0.6540 -4.8686 26 6 6.9379 -0.7060 -5.3522 27 6 8.6965 1.0420 -5.6594 28 6 7.7885 0.5706 -3.3799 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8515 0.5682 0.8410 35 1 3.9786 2.1764 0.0889 36 1 3.5280 -1.3769 -0.5970 37 1 3.9385 -1.2387 -2.3236 38 1 5.5036 -4.4072 -1.2888 39 1 2.5695 0.8224 -4.4149 40 1 3.6021 -0.3491 -5.2691 41 1 2.9595 -0.7395 -3.6557 42 1 6.6934 -0.6465 -6.4127 43 1 7.7119 -1.4580 -5.1989 44 1 6.0466 -0.9824 -4.7888 45 1 9.0581 2.0109 -5.3149 46 1 9.4708 0.2903 -5.5062 47 1 8.4520 1.1016 -6.7199 48 1 6.8973 0.2941 -2.8166 49 1 8.5623 -0.1817 -3.2271 50 1 8.1501 1.5394 -3.0355 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612605259.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:55 Heat of formation + Delta-G solvation = 14.201136 kcal Electronic energy + Delta-G solvation = -32832.188839 eV Core-core repulsion = 28704.020707 eV Total energy + Delta-G solvation = -4128.168133 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.32537 -41.28994 -38.85531 -38.41553 -36.91819 -36.77575 -34.57152 -33.25959 -32.37460 -31.02609 -28.94179 -28.46652 -28.33735 -27.23409 -26.52070 -25.06172 -24.90480 -24.57627 -23.18065 -21.14607 -20.37913 -18.81287 -18.44654 -18.26690 -17.77751 -17.24963 -17.12048 -16.71212 -16.54565 -16.31631 -15.99652 -15.65718 -15.17822 -15.08238 -14.73180 -14.61840 -14.18939 -13.95676 -13.84373 -13.63824 -13.54087 -13.33933 -13.26367 -13.11875 -13.03176 -12.93713 -12.80210 -12.74513 -12.68022 -12.66046 -12.52635 -12.23383 -12.16575 -12.08692 -12.00947 -11.90182 -11.74627 -11.56915 -11.13800 -10.83313 -10.61307 -10.47413 -9.58635 -8.13729 -6.27774 0.18351 0.77798 1.13539 1.40199 1.46503 1.53640 1.59126 2.05775 2.46745 2.79488 2.89668 3.08741 3.19270 3.36917 3.50329 3.57772 3.80747 3.96985 4.07023 4.10317 4.15673 4.26436 4.35083 4.39844 4.41339 4.51772 4.53840 4.57725 4.61440 4.65208 4.70255 4.76413 4.79199 4.84208 4.85789 4.88359 4.93253 4.95737 5.00745 5.08670 5.24142 5.26561 5.35945 5.39950 5.64199 5.81241 6.09265 6.23011 6.42943 6.80389 7.03811 7.43994 7.53440 8.91690 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.008563 B = 0.006229 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3268.994686 B = 4494.018050 C = 6867.920321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.055 3.945 4 C 0.116 3.884 5 N -0.575 5.575 6 C 0.243 3.757 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.040 3.960 10 N -0.909 5.909 11 Si 0.933 3.067 12 H -0.287 1.287 13 H -0.280 1.280 14 H -0.255 1.255 15 C 0.507 3.493 16 O -0.575 6.575 17 C 0.118 3.882 18 H 0.164 0.836 19 C -0.154 4.154 20 N -0.284 5.284 21 N -0.086 5.086 22 N -0.113 5.113 23 N -0.319 5.319 24 C 0.201 3.799 25 C 0.015 3.985 26 C -0.151 4.151 27 C -0.125 4.125 28 C -0.157 4.157 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.034 0.966 37 H 0.040 0.960 38 H 0.268 0.732 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.053 0.947 45 H 0.056 0.944 46 H 0.095 0.905 47 H 0.067 0.933 48 H 0.057 0.943 49 H 0.095 0.905 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.766 0.590 -2.427 2.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.022 4.022 4 C -0.006 4.006 5 N -0.305 5.305 6 C 0.123 3.877 7 C -0.587 4.587 8 H 0.075 0.925 9 C -0.162 4.162 10 N -0.547 5.547 11 Si 0.759 3.241 12 H -0.214 1.214 13 H -0.206 1.206 14 H -0.178 1.178 15 C 0.292 3.708 16 O -0.456 6.456 17 C 0.014 3.986 18 H 0.181 0.819 19 C -0.212 4.212 20 N -0.085 5.085 21 N -0.072 5.072 22 N -0.106 5.106 23 N -0.167 5.167 24 C -0.077 4.077 25 C 0.011 3.989 26 C -0.209 4.209 27 C -0.183 4.183 28 C -0.215 4.215 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.092 0.908 43 H 0.118 0.882 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.113 0.887 47 H 0.086 0.914 48 H 0.076 0.924 49 H 0.114 0.886 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.267 2.070 -2.959 3.827 hybrid contribution 0.541 -0.755 1.037 1.392 sum -0.726 1.315 -1.922 2.439 Atomic orbital electron populations 1.22881 0.79928 1.03522 1.00546 1.87977 1.21130 1.27842 1.95483 1.22897 0.93436 0.84993 1.00909 1.21565 0.92946 0.99527 0.86593 1.48070 1.63113 1.10063 1.09212 1.19437 0.96203 0.73425 0.98594 1.21596 0.95278 0.92552 1.49283 0.92496 1.25401 1.00508 0.95897 0.94421 1.69991 1.36077 1.00395 1.48251 0.85926 0.81609 0.78522 0.78047 1.21394 1.20583 1.17844 1.20227 0.78017 0.86736 0.85803 1.90706 1.54561 1.15009 1.85287 1.22193 1.02023 0.87681 0.86743 0.81886 1.22176 0.94155 1.02048 1.02826 1.48254 1.10618 1.17346 1.32276 1.78858 1.22602 0.95685 1.10089 1.78507 0.96645 1.21550 1.13924 1.74850 1.16621 1.04596 1.20666 1.26689 0.88269 0.98400 0.94316 1.19496 0.90816 0.90392 0.98160 1.22128 1.02847 0.93977 1.01929 1.21747 0.94316 1.02510 0.99700 1.22195 1.03646 1.02954 0.92729 0.92641 0.94049 0.88887 0.90052 0.94350 0.88937 0.89366 0.94820 0.94233 0.92309 0.91041 0.88723 0.87650 0.90770 0.88157 0.92805 0.92509 0.88660 0.91354 0.92437 0.88624 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.40 -12.75 9.93 -148.98 -1.48 -14.23 16 3 C 0.06 1.62 6.26 71.98 0.45 2.07 16 4 C 0.12 3.92 5.78 86.38 0.50 4.42 16 5 N -0.58 -21.88 2.41 -826.15 -1.99 -23.88 16 6 C 0.24 10.12 4.61 85.64 0.39 10.52 16 7 C -0.55 -24.39 8.04 25.60 0.21 -24.18 16 8 H 0.06 2.58 7.41 -2.91 -0.02 2.56 16 9 C 0.04 1.81 5.46 84.65 0.46 2.28 16 10 N -0.91 -44.02 13.29 21.44 0.28 -43.74 16 11 Si 0.93 36.26 29.54 68.60 2.03 38.29 16 12 H -0.29 -11.58 7.11 99.48 0.71 -10.87 16 13 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 14 H -0.25 -9.25 7.11 99.48 0.71 -8.55 16 15 C 0.51 19.94 6.92 87.66 0.61 20.54 16 16 O -0.57 -25.69 15.37 -3.04 -0.05 -25.73 16 17 C 0.12 4.12 1.41 44.25 0.06 4.19 16 18 H 0.16 5.67 2.45 -2.39 -0.01 5.67 16 19 C -0.15 -4.60 9.14 71.98 0.66 -3.94 16 20 N -0.28 -10.41 2.89 -321.37 -0.93 -11.33 16 21 N -0.09 -3.54 12.18 37.02 0.45 -3.09 16 22 N -0.11 -4.65 13.43 37.01 0.50 -4.15 16 23 N -0.32 -11.96 11.71 -50.45 -0.59 -12.55 16 24 C 0.20 6.86 6.40 138.13 0.88 7.74 16 25 C 0.01 0.40 0.75 -52.93 -0.04 0.36 16 26 C -0.15 -3.54 8.31 71.98 0.60 -2.94 16 27 C -0.13 -2.73 8.00 71.98 0.58 -2.16 16 28 C -0.16 -4.59 8.31 71.98 0.60 -4.00 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 3.09 8.05 -2.39 -0.02 3.07 16 35 H 0.09 2.94 7.48 -2.39 -0.02 2.92 16 36 H 0.03 1.56 7.48 -2.38 -0.02 1.55 16 37 H 0.04 1.64 4.65 -2.39 -0.01 1.63 16 38 H 0.27 12.46 8.31 -92.71 -0.77 11.69 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.09 2.40 8.14 -2.38 -0.02 2.39 16 41 H 0.11 3.11 6.13 -2.39 -0.01 3.10 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.05 1.41 5.58 -2.38 -0.01 1.40 16 45 H 0.06 1.33 8.14 -2.38 -0.02 1.32 16 46 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.06 1.96 4.30 -2.39 -0.01 1.95 16 49 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -60.82 398.29 6.37 -54.45 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.95 Total: 29.21 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: 7.20 Total: 16.77 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -2.28 Total: -98.75 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -1.53 Total: -39.96 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Total: -60.82 6.37 -54.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612605259.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.648 kcal (2) G-P(sol) polarization free energy of solvation -60.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds