Wall clock time and date at job start Sat Apr 11 2020 05:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34233 * 117.00013 * 2 1 4 4 O 1.20815 * 119.99910 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99926 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.01605 * 301.39342 * 5 3 2 7 7 C 1.53874 * 110.03069 * 62.83628 * 5 3 2 8 8 C 1.54460 * 106.68560 * 119.44388 * 7 5 3 9 9 C 1.54889 * 104.10316 * 23.33985 * 8 7 5 10 10 H 1.08997 * 110.76001 * 80.70591 * 9 8 7 11 11 N 1.46505 * 110.75963 * 203.89815 * 9 8 7 12 12 C 1.34777 * 119.99531 * 271.06401 * 11 9 8 13 13 O 1.21583 * 120.00151 * 359.97438 * 12 11 9 14 14 N 1.34778 * 119.99576 * 179.97438 * 12 11 9 15 15 C 1.46497 * 119.99837 * 179.97438 * 14 12 11 16 16 C 1.53044 * 109.46017 * 205.00407 * 15 14 12 17 17 C 1.53193 * 109.31142 * 178.61413 * 16 15 14 18 18 N 1.46929 * 108.77474 * 54.63326 * 17 16 15 19 19 C 1.36936 * 120.62929 * 126.36563 * 18 17 16 20 20 H 1.08001 * 120.00262 * 332.76191 * 19 18 17 21 21 C 1.38817 * 119.99857 * 152.75941 * 19 18 17 22 22 N 1.31615 * 120.00077 * 342.49527 * 21 19 18 23 23 Si 1.86805 * 119.99817 * 162.49092 * 21 19 18 24 24 H 1.48500 * 109.46871 * 84.98489 * 23 21 19 25 25 H 1.48503 * 109.47010 * 324.98577 * 23 21 19 26 26 H 1.48498 * 109.46858 * 204.98924 * 23 21 19 27 27 C 1.46923 * 118.73880 * 306.64083 * 18 17 16 28 28 C 1.52762 * 109.00850 * 53.31466 * 27 18 17 29 29 C 1.54263 * 110.02996 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.47115 * 299.99254 * 1 2 3 31 31 H 1.09000 * 109.47764 * 59.99619 * 1 2 3 32 32 H 1.09003 * 109.47368 * 180.02562 * 1 2 3 33 33 H 1.09000 * 110.02978 * 238.56830 * 7 5 3 34 34 H 1.08996 * 110.03699 * 359.97438 * 7 5 3 35 35 H 1.08999 * 110.40429 * 264.75403 * 8 7 5 36 36 H 1.08995 * 110.66350 * 142.04812 * 8 7 5 37 37 H 0.96991 * 120.00071 * 91.06010 * 11 9 8 38 38 H 0.96998 * 120.00123 * 0.02562 * 14 12 11 39 39 H 1.09004 * 109.46167 * 324.97416 * 15 14 12 40 40 H 1.09000 * 109.49968 * 58.66330 * 16 15 14 41 41 H 1.08999 * 109.52290 * 298.58180 * 16 15 14 42 42 H 1.09001 * 109.58922 * 294.84677 * 17 16 15 43 43 H 1.08999 * 109.58277 * 174.41753 * 17 16 15 44 44 H 0.96998 * 119.99580 * 179.97438 * 22 21 19 45 45 H 1.09006 * 109.58337 * 173.14478 * 27 18 17 46 46 H 1.08994 * 109.59005 * 293.56910 * 27 18 17 47 47 H 1.08995 * 109.56398 * 185.55412 * 28 27 18 48 48 H 1.08992 * 109.39061 * 65.51038 * 28 27 18 49 49 H 1.08999 * 110.48529 * 98.42964 * 29 5 3 50 50 H 1.08991 * 110.48731 * 335.78539 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9671 0.7615 0.8734 7 6 4.1266 0.6436 -1.2872 8 6 4.9044 1.7559 -2.0245 9 6 5.2741 2.7625 -0.9068 10 1 6.1513 2.4232 -0.3560 11 7 5.4984 4.0985 -1.4646 12 6 6.7273 4.4541 -1.8885 13 8 7.6499 3.6664 -1.8075 14 7 6.9336 5.6830 -2.4021 15 6 8.2695 6.0698 -2.8623 16 6 8.4079 7.5928 -2.8036 17 6 9.8173 7.9911 -3.2525 18 7 10.0724 7.4127 -4.5788 19 6 10.4803 8.2047 -5.6187 20 1 10.2117 9.2506 -5.6386 21 6 11.2393 7.6633 -6.6473 22 7 11.8551 6.5129 -6.4755 23 14 11.3864 8.5676 -8.2752 24 1 12.4787 9.5699 -8.1877 25 1 10.1056 9.2563 -8.5764 26 1 11.6917 7.5956 -9.3555 27 6 9.8754 5.9693 -4.7697 28 6 8.4706 5.5927 -4.3025 29 6 4.0181 2.7499 0.0002 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 4.8002 -0.1764 -1.0380 34 1 3.3102 0.2798 -1.9109 35 1 4.2698 2.2319 -2.7720 36 1 5.8049 1.3530 -2.4880 37 1 4.7624 4.7270 -1.5289 38 1 6.1976 6.3116 -2.4663 39 1 9.0216 5.6118 -2.2198 40 1 8.2414 7.9342 -1.7819 41 1 7.6724 8.0512 -3.4647 42 1 10.5492 7.6095 -2.5405 43 1 9.8899 9.0773 -3.3075 44 1 12.3851 6.1345 -7.1944 45 1 9.9864 5.7218 -5.8255 46 1 10.6120 5.4193 -4.1841 47 1 8.3489 4.5105 -4.3475 48 1 7.7342 6.0689 -4.9496 49 1 4.2734 3.0701 1.0103 50 1 3.2393 3.3876 -0.4178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619032891.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:07 Heat of formation + Delta-G solvation = -104.361500 kcal Electronic energy + Delta-G solvation = -29656.361993 eV Core-core repulsion = 25490.759848 eV Total energy + Delta-G solvation = -4165.602145 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.16324 -40.01656 -38.34942 -37.27119 -36.69793 -34.31533 -33.84085 -32.00904 -30.10903 -29.75936 -29.37396 -28.62402 -27.34656 -24.89558 -22.95280 -22.26838 -22.12018 -20.98762 -20.67688 -20.20236 -19.38933 -18.05158 -18.03453 -17.31930 -16.95202 -16.68488 -16.08985 -15.76170 -15.01416 -14.86886 -14.66340 -14.20440 -13.94528 -13.85314 -13.64072 -13.59307 -13.45972 -13.00362 -12.84742 -12.63881 -12.52062 -12.27195 -12.07470 -11.86102 -11.68781 -11.44585 -11.30275 -11.24876 -11.10912 -11.07193 -10.89001 -10.68479 -10.64112 -10.34608 -10.22942 -10.05930 -9.93294 -9.71297 -9.51634 -9.11199 -8.57732 -8.34873 -6.65701 -5.75495 -3.17422 1.76398 2.21692 2.83596 3.39577 3.40606 3.46364 3.48361 3.94852 4.11352 4.29551 4.49792 4.52105 4.63956 4.69062 4.72745 4.87071 5.00199 5.05165 5.07665 5.12877 5.21219 5.34494 5.43700 5.45001 5.50321 5.64277 5.69166 5.74763 5.87961 5.88771 5.94641 5.98188 6.13627 6.28214 6.41678 6.50792 6.51726 6.64196 6.69638 6.81537 6.95063 6.99786 7.16504 7.29658 7.43717 7.72593 7.82417 8.19892 8.47934 8.81895 9.24147 9.87896 10.44359 11.33107 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027110 B = 0.001838 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.589825 B =15233.301559 C =15512.860106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.467 3.533 4 O -0.506 6.506 5 C -0.083 4.083 6 H 0.116 0.884 7 C -0.110 4.110 8 C -0.139 4.139 9 C 0.163 3.837 10 H 0.100 0.900 11 N -0.745 5.745 12 C 0.703 3.297 13 O -0.588 6.588 14 N -0.740 5.740 15 C 0.169 3.831 16 C -0.139 4.139 17 C 0.149 3.851 18 N -0.592 5.592 19 C -0.254 4.254 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.286 1.286 25 H -0.281 1.281 26 H -0.290 1.290 27 C 0.173 3.827 28 C -0.146 4.146 29 C -0.122 4.122 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.394 0.606 38 H 0.390 0.610 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.021 0.979 43 H 0.058 0.942 44 H 0.254 0.746 45 H 0.089 0.911 46 H 0.020 0.980 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.082 0.918 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.053 -11.837 14.666 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.310 3.690 4 O -0.393 6.393 5 C -0.103 4.103 6 H 0.134 0.866 7 C -0.149 4.149 8 C -0.178 4.178 9 C 0.057 3.943 10 H 0.118 0.882 11 N -0.400 5.400 12 C 0.403 3.597 13 O -0.466 6.466 14 N -0.393 5.393 15 C 0.065 3.935 16 C -0.179 4.179 17 C 0.021 3.979 18 N -0.315 5.315 19 C -0.384 4.384 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.545 5.545 23 Si 0.731 3.269 24 H -0.213 1.213 25 H -0.206 1.206 26 H -0.216 1.216 27 C 0.047 3.953 28 C -0.186 4.186 29 C -0.160 4.160 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.228 0.772 38 H 0.223 0.777 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.038 0.962 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.101 0.899 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.270 -12.347 14.611 28.606 hybrid contribution -0.984 0.984 -0.916 1.666 sum -22.253 -11.362 13.694 28.493 Atomic orbital electron populations 1.23292 0.76222 1.03814 1.02625 1.86514 1.23499 1.33398 1.84016 1.23744 0.92080 0.81288 0.71858 1.90662 1.67100 1.36362 1.45158 1.21640 0.87000 0.99251 1.02411 0.86607 1.22098 1.00164 0.98648 0.93942 1.22870 1.00707 0.95946 0.98263 1.21688 0.97570 0.81782 0.93263 0.88178 1.45097 1.10008 1.16265 1.68656 1.16005 0.82857 0.82723 0.78165 1.90926 1.41895 1.51579 1.62159 1.45531 1.13149 1.13871 1.66766 1.20900 0.81667 0.94857 0.96062 1.22345 1.01398 0.94090 1.00040 1.20839 0.91541 0.97244 0.88225 1.44090 1.77877 1.04372 1.05178 1.19151 1.26580 0.93577 0.99047 0.91694 1.25036 0.96850 0.97766 1.00010 1.70040 1.32573 1.19976 1.31902 0.86341 0.77866 0.78827 0.83871 1.21331 1.20634 1.21590 1.20677 0.89304 0.83617 1.01739 1.22497 1.01755 0.99628 0.94767 1.22656 0.97885 0.94094 1.01355 0.91863 0.91816 0.87988 0.89777 0.90868 0.91100 0.90020 0.77217 0.77745 0.90091 0.92683 0.91945 0.96160 0.92382 0.93598 0.89288 0.96182 0.92805 0.92889 0.89940 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.55 101.05 1.07 1.25 16 2 O -0.36 -2.75 10.54 -39.27 -0.41 -3.16 16 3 C 0.47 4.01 7.00 36.01 0.25 4.26 16 4 O -0.51 -5.64 15.15 -18.74 -0.28 -5.93 16 5 C -0.08 -0.56 3.41 -90.65 -0.31 -0.87 16 6 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 7 C -0.11 -0.75 6.44 -25.51 -0.16 -0.91 16 8 C -0.14 -1.25 6.53 -24.97 -0.16 -1.42 16 9 C 0.16 1.54 3.21 -65.91 -0.21 1.33 16 10 H 0.10 1.09 7.62 -51.93 -0.40 0.69 16 11 N -0.74 -7.92 5.20 -56.71 -0.29 -8.21 16 12 C 0.70 10.51 8.53 -86.92 -0.74 9.77 16 13 O -0.59 -11.35 15.69 5.29 0.08 -11.27 16 14 N -0.74 -10.48 5.08 -58.63 -0.30 -10.78 16 15 C 0.17 2.98 2.42 -67.89 -0.16 2.82 16 16 C -0.14 -2.32 5.55 -26.61 -0.15 -2.47 16 17 C 0.15 3.08 6.52 -3.71 -0.02 3.05 16 18 N -0.59 -14.89 3.00 -172.58 -0.52 -15.41 16 19 C -0.25 -6.97 9.59 -15.06 -0.14 -7.12 16 20 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 21 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 22 N -0.90 -26.49 11.18 55.49 0.62 -25.87 16 23 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 C 0.17 4.26 5.29 -3.93 -0.02 4.24 16 28 C -0.15 -2.97 5.64 -26.83 -0.15 -3.12 16 29 C -0.12 -0.90 5.78 -25.05 -0.14 -1.05 16 30 H 0.06 0.33 8.13 -51.93 -0.42 -0.10 16 31 H 0.06 0.35 8.13 -51.93 -0.42 -0.08 16 32 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.50 7.66 -51.93 -0.40 0.10 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.39 3.20 8.56 -40.82 -0.35 2.85 16 38 H 0.39 4.34 8.62 -40.82 -0.35 3.98 16 39 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.16 7.93 -51.93 -0.41 0.74 16 44 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.09 2.45 6.03 -51.93 -0.31 2.13 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.09 0.76 6.75 -51.93 -0.35 0.41 16 LS Contribution 399.01 15.07 6.01 6.01 Total: -1.00 -34.36 399.01 -9.70 -44.07 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -8.43 Total: 4.07 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -1.15 Total: 9.74 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.49 Total: -60.27 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.61 Total: -20.35 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.36 -9.70 -44.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619032891.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.294 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds