Wall clock time and date at job start Sat Apr 11 2020 05:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34233 * 117.00013 * 2 1 4 4 O 1.20815 * 119.99910 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99926 * 180.02562 * 3 2 1 6 6 H 1.08998 * 110.01605 * 301.39342 * 5 3 2 7 7 C 1.53874 * 110.03069 * 62.83628 * 5 3 2 8 8 C 1.54460 * 106.68560 * 119.44388 * 7 5 3 9 9 C 1.54889 * 104.10316 * 23.33985 * 8 7 5 10 10 H 1.08997 * 110.76001 * 80.70591 * 9 8 7 11 11 N 1.46505 * 110.75963 * 203.89815 * 9 8 7 12 12 C 1.34777 * 119.99531 * 271.06401 * 11 9 8 13 13 O 1.21583 * 120.00151 * 359.97438 * 12 11 9 14 14 N 1.34778 * 119.99576 * 179.97438 * 12 11 9 15 15 C 1.46497 * 119.99837 * 179.97438 * 14 12 11 16 16 C 1.53044 * 109.46017 * 205.00407 * 15 14 12 17 17 C 1.53193 * 109.31142 * 178.61413 * 16 15 14 18 18 N 1.46929 * 108.77474 * 54.63326 * 17 16 15 19 19 C 1.36936 * 120.62929 * 126.36563 * 18 17 16 20 20 H 1.08001 * 120.00262 * 332.76191 * 19 18 17 21 21 C 1.38817 * 119.99857 * 152.75941 * 19 18 17 22 22 N 1.31615 * 120.00077 * 342.49527 * 21 19 18 23 23 Si 1.86805 * 119.99817 * 162.49092 * 21 19 18 24 24 H 1.48500 * 109.46871 * 84.98489 * 23 21 19 25 25 H 1.48503 * 109.47010 * 324.98577 * 23 21 19 26 26 H 1.48498 * 109.46858 * 204.98924 * 23 21 19 27 27 C 1.46923 * 118.73880 * 306.64083 * 18 17 16 28 28 C 1.52762 * 109.00850 * 53.31466 * 27 18 17 29 29 C 1.54263 * 110.02996 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.47115 * 299.99254 * 1 2 3 31 31 H 1.09000 * 109.47764 * 59.99619 * 1 2 3 32 32 H 1.09003 * 109.47368 * 180.02562 * 1 2 3 33 33 H 1.09000 * 110.02978 * 238.56830 * 7 5 3 34 34 H 1.08996 * 110.03699 * 359.97438 * 7 5 3 35 35 H 1.08999 * 110.40429 * 264.75403 * 8 7 5 36 36 H 1.08995 * 110.66350 * 142.04812 * 8 7 5 37 37 H 0.96991 * 120.00071 * 91.06010 * 11 9 8 38 38 H 0.96998 * 120.00123 * 0.02562 * 14 12 11 39 39 H 1.09004 * 109.46167 * 324.97416 * 15 14 12 40 40 H 1.09000 * 109.49968 * 58.66330 * 16 15 14 41 41 H 1.08999 * 109.52290 * 298.58180 * 16 15 14 42 42 H 1.09001 * 109.58922 * 294.84677 * 17 16 15 43 43 H 1.08999 * 109.58277 * 174.41753 * 17 16 15 44 44 H 0.96998 * 119.99580 * 179.97438 * 22 21 19 45 45 H 1.09006 * 109.58337 * 173.14478 * 27 18 17 46 46 H 1.08994 * 109.59005 * 293.56910 * 27 18 17 47 47 H 1.08995 * 109.56398 * 185.55412 * 28 27 18 48 48 H 1.08992 * 109.39061 * 65.51038 * 28 27 18 49 49 H 1.08999 * 110.48529 * 98.42964 * 29 5 3 50 50 H 1.08991 * 110.48731 * 335.78539 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9671 0.7615 0.8734 7 6 4.1266 0.6436 -1.2872 8 6 4.9044 1.7559 -2.0245 9 6 5.2741 2.7625 -0.9068 10 1 6.1513 2.4232 -0.3560 11 7 5.4984 4.0985 -1.4646 12 6 6.7273 4.4541 -1.8885 13 8 7.6499 3.6664 -1.8075 14 7 6.9336 5.6830 -2.4021 15 6 8.2695 6.0698 -2.8623 16 6 8.4079 7.5928 -2.8036 17 6 9.8173 7.9911 -3.2525 18 7 10.0724 7.4127 -4.5788 19 6 10.4803 8.2047 -5.6187 20 1 10.2117 9.2506 -5.6386 21 6 11.2393 7.6633 -6.6473 22 7 11.8551 6.5129 -6.4755 23 14 11.3864 8.5676 -8.2752 24 1 12.4787 9.5699 -8.1877 25 1 10.1056 9.2563 -8.5764 26 1 11.6917 7.5956 -9.3555 27 6 9.8754 5.9693 -4.7697 28 6 8.4706 5.5927 -4.3025 29 6 4.0181 2.7499 0.0002 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 4.8002 -0.1764 -1.0380 34 1 3.3102 0.2798 -1.9109 35 1 4.2698 2.2319 -2.7720 36 1 5.8049 1.3530 -2.4880 37 1 4.7624 4.7270 -1.5289 38 1 6.1976 6.3116 -2.4663 39 1 9.0216 5.6118 -2.2198 40 1 8.2414 7.9342 -1.7819 41 1 7.6724 8.0512 -3.4647 42 1 10.5492 7.6095 -2.5405 43 1 9.8899 9.0773 -3.3075 44 1 12.3851 6.1345 -7.1944 45 1 9.9864 5.7218 -5.8255 46 1 10.6120 5.4193 -4.1841 47 1 8.3489 4.5105 -4.3475 48 1 7.7342 6.0689 -4.9496 49 1 4.2734 3.0701 1.0103 50 1 3.2393 3.3876 -0.4178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619032891.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:04 Heat of formation + Delta-G solvation = -127.414207 kcal Electronic energy + Delta-G solvation = -29657.361633 eV Core-core repulsion = 25490.759848 eV Total energy + Delta-G solvation = -4166.601786 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -41.82648 -41.16156 -39.42369 -38.55834 -37.41461 -35.93384 -34.87951 -33.75125 -31.76534 -31.23140 -30.25902 -29.36148 -28.00300 -26.74180 -23.98211 -23.84948 -23.43553 -22.07761 -21.61198 -21.09308 -20.82931 -19.30319 -18.71054 -18.59229 -17.98017 -17.57640 -17.17694 -16.75882 -16.44294 -16.06662 -15.91935 -15.60557 -15.34204 -15.16296 -14.74507 -14.57197 -14.55267 -14.24278 -14.21496 -14.02735 -13.50863 -13.15859 -13.01942 -12.99136 -12.79863 -12.65961 -12.56205 -12.50957 -12.30585 -12.10356 -12.06595 -11.92445 -11.83629 -11.80161 -11.78408 -11.50947 -11.40356 -11.28571 -11.15081 -10.56389 -10.23893 -9.69899 -8.70486 -7.86160 -5.31330 1.13081 1.47854 1.49699 1.58824 1.60051 1.85242 2.21612 2.52739 3.21095 3.30410 3.45818 3.47662 3.68909 3.86070 3.91359 4.05952 4.12537 4.25455 4.30068 4.32532 4.37081 4.37521 4.40487 4.46029 4.49961 4.56985 4.70041 4.72288 4.82990 4.86691 4.88644 5.05106 5.05433 5.10717 5.12761 5.15652 5.20065 5.22619 5.34146 5.37752 5.48317 5.62107 5.64947 5.66127 5.71613 6.08774 6.39603 6.68486 7.14517 7.17857 7.66936 7.86144 8.38615 9.21015 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027110 B = 0.001838 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.589825 B =15233.301559 C =15512.860106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.469 3.531 4 O -0.536 6.536 5 C -0.079 4.079 6 H 0.141 0.859 7 C -0.103 4.103 8 C -0.138 4.138 9 C 0.159 3.841 10 H 0.087 0.913 11 N -0.727 5.727 12 C 0.700 3.300 13 O -0.634 6.634 14 N -0.727 5.727 15 C 0.182 3.818 16 C -0.121 4.121 17 C 0.141 3.859 18 N -0.609 5.609 19 C -0.262 4.262 20 H 0.074 0.926 21 C -0.055 4.055 22 N -0.938 5.938 23 Si 0.969 3.031 24 H -0.282 1.282 25 H -0.269 1.269 26 H -0.296 1.296 27 C 0.182 3.818 28 C -0.129 4.129 29 C -0.111 4.111 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.130 0.870 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.410 0.590 38 H 0.410 0.590 39 H 0.056 0.944 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.012 0.988 43 H 0.068 0.932 44 H 0.249 0.751 45 H 0.055 0.945 46 H -0.011 1.011 47 H 0.044 0.956 48 H 0.058 0.942 49 H 0.094 0.906 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.585 -11.188 15.790 31.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.314 3.686 4 O -0.425 6.425 5 C -0.099 4.099 6 H 0.159 0.841 7 C -0.141 4.141 8 C -0.177 4.177 9 C 0.054 3.946 10 H 0.105 0.895 11 N -0.382 5.382 12 C 0.400 3.600 13 O -0.515 6.515 14 N -0.381 5.381 15 C 0.076 3.924 16 C -0.160 4.160 17 C 0.015 3.985 18 N -0.333 5.333 19 C -0.392 4.392 20 H 0.091 0.909 21 C -0.250 4.250 22 N -0.584 5.584 23 Si 0.796 3.204 24 H -0.209 1.209 25 H -0.194 1.194 26 H -0.223 1.223 27 C 0.056 3.944 28 C -0.170 4.170 29 C -0.149 4.149 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.148 0.852 33 H 0.116 0.884 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.246 0.754 38 H 0.246 0.754 39 H 0.074 0.926 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.030 0.970 43 H 0.086 0.914 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.007 0.993 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.113 0.887 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.892 -11.673 15.772 30.916 hybrid contribution -0.226 0.734 -1.207 1.430 sum -24.118 -10.939 14.565 30.224 Atomic orbital electron populations 1.23537 0.74980 1.05641 1.02453 1.86509 1.24792 1.32869 1.83594 1.24026 0.92614 0.81087 0.70921 1.90651 1.67860 1.37302 1.46720 1.21688 0.85992 0.98926 1.03274 0.84122 1.22042 1.00135 0.98135 0.93745 1.22811 1.00053 0.96630 0.98217 1.21788 0.98086 0.81067 0.93704 0.89515 1.44940 1.08925 1.17056 1.67285 1.16167 0.83476 0.82340 0.78033 1.90906 1.43773 1.52906 1.63952 1.45119 1.12417 1.14231 1.66380 1.20485 0.82914 0.95474 0.93517 1.22134 0.98710 0.92903 1.02280 1.21053 0.93835 0.97651 0.85955 1.44332 1.78066 1.04182 1.06671 1.19561 1.25712 0.94149 0.99740 0.90854 1.25852 0.97058 0.98746 1.03352 1.70214 1.33831 1.21812 1.32565 0.85281 0.78172 0.77447 0.79460 1.20860 1.19383 1.22269 1.20384 0.91140 0.83731 0.99185 1.22237 0.98811 0.99045 0.96889 1.22552 0.96292 0.94682 1.01325 0.91886 0.92187 0.85235 0.88379 0.90642 0.91465 0.92067 0.75357 0.75396 0.92594 0.89069 0.90738 0.96957 0.91369 0.94205 0.92696 0.99338 0.93774 0.92298 0.88691 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.55 113.37 1.20 1.44 16 2 O -0.36 -4.85 10.54 -51.45 -0.54 -5.40 16 3 C 0.47 7.20 7.00 71.24 0.50 7.70 16 4 O -0.54 -11.24 15.15 22.00 0.33 -10.91 16 5 C -0.08 -0.89 3.41 -10.82 -0.04 -0.93 16 6 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 7 C -0.10 -1.22 6.44 31.39 0.20 -1.02 16 8 C -0.14 -2.39 6.53 31.74 0.21 -2.19 16 9 C 0.16 2.82 3.21 46.30 0.15 2.97 16 10 H 0.09 1.83 7.62 -2.39 -0.02 1.81 16 11 N -0.73 -14.30 5.20 -451.58 -2.35 -16.65 16 12 C 0.70 20.26 8.53 179.05 1.53 21.78 16 13 O -0.63 -24.73 15.69 -3.98 -0.06 -24.79 16 14 N -0.73 -19.19 5.08 -457.68 -2.33 -21.51 16 15 C 0.18 6.24 2.42 45.02 0.11 6.35 16 16 C -0.12 -3.73 5.55 30.67 0.17 -3.56 16 17 C 0.14 5.70 6.52 86.36 0.56 6.26 16 18 N -0.61 -30.92 3.00 -699.92 -2.10 -33.02 16 19 C -0.26 -14.40 9.59 84.03 0.81 -13.59 16 20 H 0.07 3.84 7.89 -2.91 -0.02 3.82 16 21 C -0.06 -3.12 4.91 84.86 0.42 -2.70 16 22 N -0.94 -57.15 11.18 21.65 0.24 -56.91 16 23 Si 0.97 45.22 29.59 68.60 2.03 47.25 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 27 C 0.18 9.34 5.29 86.22 0.46 9.80 16 28 C -0.13 -5.31 5.64 30.53 0.17 -5.14 16 29 C -0.11 -1.41 5.78 31.68 0.18 -1.23 16 30 H 0.06 0.57 8.13 -2.39 -0.02 0.55 16 31 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 32 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.41 5.63 8.56 -92.71 -0.79 4.84 16 38 H 0.41 7.75 8.62 -92.71 -0.80 6.95 16 39 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 40 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 44 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 45 H 0.05 3.17 6.03 -2.38 -0.01 3.16 16 46 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 47 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 49 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.09 1.26 6.75 -2.39 -0.02 1.25 16 Total: -1.00 -77.27 399.01 1.20 -76.07 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -0.64 Total: 19.92 kcal Atomic # 6 Polarization: 19.33 SS G_CDS: 6.62 Total: 25.94 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -6.53 Total: -128.09 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.27 Total: -41.09 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -77.27 1.20 -76.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619032891.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.347 kcal (2) G-P(sol) polarization free energy of solvation -77.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds