Wall clock time and date at job start Sat Apr 11 2020 05:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34640 * 117.00202 * 2 1 4 4 O 1.21511 * 119.99373 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00261 * 180.02562 * 3 2 1 6 6 C 1.46925 * 120.62766 * 359.97438 * 5 3 2 7 7 C 1.53189 * 108.77309 * 233.33095 * 6 5 3 8 8 C 1.53041 * 109.31824 * 305.36591 * 7 6 5 9 9 C 1.53044 * 109.53554 * 61.36506 * 8 7 6 10 10 H 1.08996 * 109.49702 * 58.58622 * 9 8 7 11 11 N 1.46496 * 109.50054 * 178.65327 * 9 8 7 12 12 C 1.34775 * 120.00136 * 204.99861 * 11 9 8 13 13 O 1.21587 * 120.00200 * 355.02473 * 12 11 9 14 14 N 1.34778 * 120.00089 * 175.01947 * 12 11 9 15 15 C 1.46924 * 120.63492 * 184.95962 * 14 12 11 16 16 C 1.52751 * 109.00947 * 233.58963 * 15 14 12 17 17 C 1.53040 * 109.38358 * 305.58357 * 16 15 14 18 18 C 1.50700 * 109.46279 * 181.26251 * 17 16 15 19 19 H 1.07998 * 119.99866 * 274.97327 * 18 17 16 20 20 C 1.37879 * 120.00156 * 94.96918 * 18 17 16 21 21 N 1.31512 * 120.00098 * 174.98161 * 20 18 17 22 22 Si 1.86807 * 119.99857 * 354.98902 * 20 18 17 23 23 H 1.48494 * 109.47361 * 94.95777 * 22 20 18 24 24 H 1.48499 * 109.46828 * 214.96130 * 22 20 18 25 25 H 1.48499 * 109.46802 * 334.95689 * 22 20 18 26 26 C 1.53039 * 109.53828 * 61.24236 * 17 16 15 27 27 C 1.46935 * 120.62828 * 5.24198 * 14 12 11 28 28 C 1.46926 * 120.63180 * 179.71933 * 5 3 2 29 29 H 1.09000 * 109.46987 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46920 * 299.99984 * 1 2 3 31 31 H 1.08996 * 109.46742 * 60.00124 * 1 2 3 32 32 H 1.08996 * 109.58873 * 353.12242 * 6 5 3 33 33 H 1.08999 * 109.58473 * 113.55132 * 6 5 3 34 34 H 1.09000 * 109.49697 * 65.32272 * 7 6 5 35 35 H 1.09001 * 109.49999 * 185.38389 * 7 6 5 36 36 H 1.08994 * 109.46222 * 181.38336 * 8 7 6 37 37 H 1.08996 * 109.45852 * 301.34689 * 8 7 6 38 38 H 0.97003 * 119.99995 * 24.99704 * 11 9 8 39 39 H 1.09002 * 109.58313 * 353.42479 * 15 14 12 40 40 H 1.08998 * 109.58396 * 113.84488 * 15 14 12 41 41 H 1.09003 * 109.56648 * 185.55147 * 16 15 14 42 42 H 1.09001 * 109.38928 * 65.51297 * 16 15 14 43 43 H 1.09000 * 109.46398 * 301.22039 * 17 16 15 44 44 H 0.97000 * 120.00165 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.49925 * 178.68286 * 26 17 16 46 46 H 1.09003 * 109.52304 * 58.60393 * 26 17 16 47 47 H 1.09000 * 109.58451 * 246.15310 * 27 14 12 48 48 H 1.09002 * 109.58310 * 6.58174 * 27 14 12 49 49 H 1.08999 * 109.58592 * 246.45341 * 28 5 3 50 50 H 1.09001 * 109.58541 * 6.87864 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.2229 0.0468 -0.0005 7 6 5.2176 0.1163 1.1624 8 6 6.0281 1.4103 1.0587 9 6 5.0868 2.6130 1.1558 10 1 4.5446 2.5753 2.1006 11 7 5.8668 3.8512 1.0888 12 6 5.3828 4.9832 1.6373 13 8 4.2616 4.9998 2.1074 14 7 6.1416 6.0967 1.6647 15 6 5.6717 7.3061 2.3541 16 6 5.7348 8.4865 1.3867 17 6 7.1495 8.5988 0.8139 18 6 7.2219 9.7816 -0.1171 19 1 6.9242 9.6750 -1.1497 20 6 7.6681 11.0000 0.3495 21 7 7.8251 12.0056 -0.4833 22 14 8.0496 11.2221 2.1647 23 1 9.4996 11.0010 2.3964 24 1 7.6861 12.6001 2.5818 25 1 7.2663 10.2417 2.9586 26 6 7.4926 7.3218 0.0434 27 6 7.4519 6.1263 1.0004 28 6 4.0906 2.5719 -0.0067 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.5764 -0.8220 0.1229 33 1 4.7665 -0.0304 -0.9421 34 1 4.6742 0.1021 2.1072 35 1 5.8907 -0.7398 1.1171 36 1 6.7536 1.4504 1.8712 37 1 6.5517 1.4351 0.1031 38 1 6.7317 3.8564 0.6496 39 1 4.6434 7.1615 2.6854 40 1 6.3100 7.5076 3.2143 41 1 5.4824 9.4057 1.9154 42 1 5.0251 8.3273 0.5748 43 1 7.8613 8.7339 1.6282 44 1 8.1394 12.8626 -0.1551 45 1 8.4913 7.4119 -0.3839 46 1 6.7668 7.1727 -0.7562 47 1 8.2383 6.2297 1.7480 48 1 7.5976 5.2035 0.4388 49 1 4.6234 2.7009 -0.9488 50 1 3.3568 3.3690 0.1126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781801509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:12 Heat of formation + Delta-G solvation = -104.384567 kcal Electronic energy + Delta-G solvation = -30649.992561 eV Core-core repulsion = 26484.389416 eV Total energy + Delta-G solvation = -4165.603146 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.97629 -40.17737 -38.59325 -37.05748 -36.43301 -34.78445 -33.50075 -32.67241 -31.54711 -30.65686 -29.68767 -28.00377 -26.39888 -25.57289 -23.72318 -22.89327 -22.34308 -21.75325 -20.32522 -20.20767 -19.00650 -18.37666 -17.74424 -17.27397 -16.89669 -16.77884 -16.17030 -15.53515 -15.12525 -14.90096 -14.70220 -14.38510 -14.30799 -14.07054 -13.93639 -13.57317 -13.32153 -13.21320 -13.06162 -12.97052 -12.66022 -12.55641 -12.34200 -12.14558 -11.90799 -11.64742 -11.49740 -11.43164 -11.01914 -11.00112 -10.92585 -10.79706 -10.67410 -10.41990 -9.96687 -9.86954 -9.68684 -9.46288 -9.35352 -9.14781 -8.86671 -8.54216 -8.07708 -6.09366 -4.08293 1.82738 2.59748 2.81824 3.25923 3.36532 3.38100 3.39839 3.60605 4.00307 4.35763 4.40304 4.44733 4.50592 4.70151 4.87087 4.94075 4.95811 5.02628 5.12780 5.16535 5.21950 5.26652 5.36164 5.39436 5.51646 5.57408 5.61013 5.65968 5.75640 5.82790 5.86749 5.92613 6.02312 6.06855 6.16350 6.29327 6.31625 6.51616 6.62765 6.70840 6.81021 6.90745 7.03944 7.22578 7.31820 7.43966 7.74614 8.05038 8.12864 8.50778 8.79223 8.96182 9.53911 11.04093 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021595 B = 0.002378 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.291147 B =11770.500180 C =12266.194920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.373 6.373 3 C 0.647 3.353 4 O -0.562 6.562 5 N -0.592 5.592 6 C 0.109 3.891 7 C -0.131 4.131 8 C -0.129 4.129 9 C 0.154 3.846 10 H 0.091 0.909 11 N -0.745 5.745 12 C 0.706 3.294 13 O -0.592 6.592 14 N -0.618 5.618 15 C 0.124 3.876 16 C -0.127 4.127 17 C 0.017 3.983 18 C -0.511 4.511 19 H 0.071 0.929 20 C 0.069 3.931 21 N -0.901 5.901 22 Si 0.875 3.125 23 H -0.280 1.280 24 H -0.289 1.289 25 H -0.260 1.260 26 C -0.117 4.117 27 C 0.109 3.891 28 C 0.115 3.885 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.397 0.603 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.031 0.969 44 H 0.263 0.737 45 H 0.069 0.931 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.122 -28.870 2.558 29.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.287 6.287 3 C 0.401 3.599 4 O -0.450 6.450 5 N -0.333 5.333 6 C -0.013 4.013 7 C -0.169 4.169 8 C -0.167 4.167 9 C 0.047 3.953 10 H 0.109 0.891 11 N -0.403 5.403 12 C 0.407 3.593 13 O -0.470 6.470 14 N -0.355 5.355 15 C 0.002 3.998 16 C -0.166 4.166 17 C -0.002 4.002 18 C -0.549 4.549 19 H 0.089 0.911 20 C -0.132 4.132 21 N -0.539 5.539 22 Si 0.703 3.297 23 H -0.206 1.206 24 H -0.215 1.215 25 H -0.184 1.184 26 C -0.156 4.156 27 C -0.014 4.014 28 C -0.008 4.008 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.234 0.766 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.049 0.951 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.174 -28.343 2.916 28.959 hybrid contribution 0.620 0.421 0.591 0.954 sum -4.555 -27.922 3.507 28.507 Atomic orbital electron populations 1.23199 0.74429 1.03337 1.02919 1.86200 1.24147 1.31107 1.87257 1.18029 0.83152 0.82167 0.76516 1.91052 1.64008 1.34834 1.55112 1.46801 1.01924 1.08282 1.76264 1.21792 0.93904 0.86700 0.98942 1.21889 0.98097 0.97752 0.99205 1.21846 0.98105 0.93477 1.03313 1.20992 0.91942 0.82822 0.99544 0.89069 1.45234 1.23500 1.08414 1.63168 1.15859 0.84095 0.80284 0.79044 1.90916 1.18279 1.84065 1.53744 1.47345 1.19391 1.11745 1.56983 1.21608 1.00054 0.83486 0.94660 1.22188 1.01088 0.95372 0.97939 1.19101 0.92093 0.93634 0.95392 1.20978 1.43709 0.92705 0.97475 0.91069 1.25081 0.94787 0.95978 0.97381 1.69915 1.46600 1.02738 1.34634 0.86884 0.78840 0.77579 0.86431 1.20578 1.21547 1.18401 1.21948 1.01784 0.94300 0.97532 1.21814 0.84255 0.99375 0.95931 1.22147 0.96203 0.83858 0.98609 0.88006 0.91782 0.91825 0.88796 0.90903 0.90975 0.89733 0.90511 0.90869 0.76578 0.89944 0.92573 0.91678 0.92389 0.95060 0.92713 0.91262 0.92443 0.91799 0.91856 0.90846 0.87584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -3.83 9.21 -40.33 -0.37 -4.20 16 3 C 0.65 8.46 8.43 54.05 0.46 8.92 16 4 O -0.56 -9.61 15.55 -19.28 -0.30 -9.91 16 5 N -0.59 -6.31 2.97 -178.59 -0.53 -6.85 16 6 C 0.11 0.72 6.45 -3.71 -0.02 0.70 16 7 C -0.13 -0.72 6.08 -26.61 -0.16 -0.88 16 8 C -0.13 -0.85 5.36 -26.69 -0.14 -0.99 16 9 C 0.15 1.63 2.56 -67.83 -0.17 1.46 16 10 H 0.09 1.20 7.65 -51.93 -0.40 0.81 16 11 N -0.74 -8.85 4.99 -58.58 -0.29 -9.15 16 12 C 0.71 11.67 8.26 -86.92 -0.72 10.95 16 13 O -0.59 -12.07 15.47 5.29 0.08 -11.98 16 14 N -0.62 -10.21 2.98 -178.76 -0.53 -10.75 16 15 C 0.12 2.26 6.41 -3.94 -0.03 2.24 16 16 C -0.13 -2.64 5.07 -26.84 -0.14 -2.77 16 17 C 0.02 0.37 1.61 -91.73 -0.15 0.22 16 18 C -0.51 -13.78 8.86 -34.44 -0.31 -14.08 16 19 H 0.07 2.12 8.06 -52.49 -0.42 1.69 16 20 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 21 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 22 Si 0.88 20.88 26.57 -169.99 -4.52 16.36 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.26 -5.81 6.10 56.52 0.34 -5.47 16 26 C -0.12 -2.11 5.34 -26.61 -0.14 -2.26 16 27 C 0.11 1.56 6.39 -3.71 -0.02 1.54 16 28 C 0.11 1.35 6.01 -3.73 -0.02 1.33 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.57 6.93 -51.93 -0.36 0.21 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.40 3.73 6.09 -40.82 -0.25 3.48 16 39 H 0.08 1.55 6.99 -51.93 -0.36 1.19 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 1.40 7.17 -51.93 -0.37 1.03 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.03 0.69 5.59 -51.93 -0.29 0.40 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.06 0.69 5.65 -51.93 -0.29 0.39 16 49 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.11 1.71 7.00 -51.93 -0.36 1.34 16 LS Contribution 388.29 15.07 5.85 5.85 Total: -1.00 -35.55 388.29 -8.65 -44.20 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -8.22 Total: 3.07 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -0.60 Total: 9.70 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.58 Total: -53.09 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.59 Total: -26.09 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.52 Total: 16.36 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.55 -8.65 -44.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781801509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.183 kcal (2) G-P(sol) polarization free energy of solvation -35.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds