Wall clock time and date at job start Sat Apr 11 2020 05:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34640 * 117.00202 * 2 1 4 4 O 1.21511 * 119.99373 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00261 * 180.02562 * 3 2 1 6 6 C 1.46925 * 120.62766 * 359.97438 * 5 3 2 7 7 C 1.53189 * 108.77309 * 233.33095 * 6 5 3 8 8 C 1.53041 * 109.31824 * 305.36591 * 7 6 5 9 9 C 1.53044 * 109.53554 * 61.36506 * 8 7 6 10 10 H 1.08996 * 109.49702 * 58.58622 * 9 8 7 11 11 N 1.46496 * 109.50054 * 178.65327 * 9 8 7 12 12 C 1.34775 * 120.00136 * 204.99861 * 11 9 8 13 13 O 1.21587 * 120.00200 * 355.02473 * 12 11 9 14 14 N 1.34778 * 120.00089 * 175.01947 * 12 11 9 15 15 C 1.46924 * 120.63492 * 184.95962 * 14 12 11 16 16 C 1.52751 * 109.00947 * 233.58963 * 15 14 12 17 17 C 1.53040 * 109.38358 * 305.58357 * 16 15 14 18 18 C 1.50700 * 109.46279 * 181.26251 * 17 16 15 19 19 H 1.07998 * 119.99866 * 274.97327 * 18 17 16 20 20 C 1.37879 * 120.00156 * 94.96918 * 18 17 16 21 21 N 1.31512 * 120.00098 * 174.98161 * 20 18 17 22 22 Si 1.86807 * 119.99857 * 354.98902 * 20 18 17 23 23 H 1.48494 * 109.47361 * 94.95777 * 22 20 18 24 24 H 1.48499 * 109.46828 * 214.96130 * 22 20 18 25 25 H 1.48499 * 109.46802 * 334.95689 * 22 20 18 26 26 C 1.53039 * 109.53828 * 61.24236 * 17 16 15 27 27 C 1.46935 * 120.62828 * 5.24198 * 14 12 11 28 28 C 1.46926 * 120.63180 * 179.71933 * 5 3 2 29 29 H 1.09000 * 109.46987 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46920 * 299.99984 * 1 2 3 31 31 H 1.08996 * 109.46742 * 60.00124 * 1 2 3 32 32 H 1.08996 * 109.58873 * 353.12242 * 6 5 3 33 33 H 1.08999 * 109.58473 * 113.55132 * 6 5 3 34 34 H 1.09000 * 109.49697 * 65.32272 * 7 6 5 35 35 H 1.09001 * 109.49999 * 185.38389 * 7 6 5 36 36 H 1.08994 * 109.46222 * 181.38336 * 8 7 6 37 37 H 1.08996 * 109.45852 * 301.34689 * 8 7 6 38 38 H 0.97003 * 119.99995 * 24.99704 * 11 9 8 39 39 H 1.09002 * 109.58313 * 353.42479 * 15 14 12 40 40 H 1.08998 * 109.58396 * 113.84488 * 15 14 12 41 41 H 1.09003 * 109.56648 * 185.55147 * 16 15 14 42 42 H 1.09001 * 109.38928 * 65.51297 * 16 15 14 43 43 H 1.09000 * 109.46398 * 301.22039 * 17 16 15 44 44 H 0.97000 * 120.00165 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.49925 * 178.68286 * 26 17 16 46 46 H 1.09003 * 109.52304 * 58.60393 * 26 17 16 47 47 H 1.09000 * 109.58451 * 246.15310 * 27 14 12 48 48 H 1.09002 * 109.58310 * 6.58174 * 27 14 12 49 49 H 1.08999 * 109.58592 * 246.45341 * 28 5 3 50 50 H 1.09001 * 109.58541 * 6.87864 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.2229 0.0468 -0.0005 7 6 5.2176 0.1163 1.1624 8 6 6.0281 1.4103 1.0587 9 6 5.0868 2.6130 1.1558 10 1 4.5446 2.5753 2.1006 11 7 5.8668 3.8512 1.0888 12 6 5.3828 4.9832 1.6373 13 8 4.2616 4.9998 2.1074 14 7 6.1416 6.0967 1.6647 15 6 5.6717 7.3061 2.3541 16 6 5.7348 8.4865 1.3867 17 6 7.1495 8.5988 0.8139 18 6 7.2219 9.7816 -0.1171 19 1 6.9242 9.6750 -1.1497 20 6 7.6681 11.0000 0.3495 21 7 7.8251 12.0056 -0.4833 22 14 8.0496 11.2221 2.1647 23 1 9.4996 11.0010 2.3964 24 1 7.6861 12.6001 2.5818 25 1 7.2663 10.2417 2.9586 26 6 7.4926 7.3218 0.0434 27 6 7.4519 6.1263 1.0004 28 6 4.0906 2.5719 -0.0067 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.5764 -0.8220 0.1229 33 1 4.7665 -0.0304 -0.9421 34 1 4.6742 0.1021 2.1072 35 1 5.8907 -0.7398 1.1171 36 1 6.7536 1.4504 1.8712 37 1 6.5517 1.4351 0.1031 38 1 6.7317 3.8564 0.6496 39 1 4.6434 7.1615 2.6854 40 1 6.3100 7.5076 3.2143 41 1 5.4824 9.4057 1.9154 42 1 5.0251 8.3273 0.5748 43 1 7.8613 8.7339 1.6282 44 1 8.1394 12.8626 -0.1551 45 1 8.4913 7.4119 -0.3839 46 1 6.7668 7.1727 -0.7562 47 1 8.2383 6.2297 1.7480 48 1 7.5976 5.2035 0.4388 49 1 4.6234 2.7009 -0.9488 50 1 3.3568 3.3690 0.1126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781801509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:10 Heat of formation + Delta-G solvation = -130.015098 kcal Electronic energy + Delta-G solvation = -30651.103984 eV Core-core repulsion = 26484.389416 eV Total energy + Delta-G solvation = -4166.714569 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.92309 -41.37965 -39.52434 -38.43362 -37.40653 -35.86575 -35.24459 -33.63653 -33.16095 -31.99985 -30.74100 -28.72682 -28.09506 -26.29584 -24.90575 -24.28900 -23.58396 -22.64242 -21.65285 -21.17944 -20.35942 -19.19647 -19.01460 -18.96049 -18.19800 -17.68725 -17.31502 -16.61245 -16.41524 -15.95357 -15.70723 -15.61316 -15.33223 -15.12799 -15.00531 -14.77230 -14.69378 -14.49346 -14.20973 -14.10534 -13.87698 -13.80511 -13.66005 -13.24430 -13.03480 -12.85417 -12.61025 -12.46138 -12.18562 -12.07010 -12.02779 -11.85972 -11.75822 -11.69352 -11.60313 -11.44992 -11.33389 -11.09964 -10.95385 -10.62839 -10.50546 -9.81843 -9.40427 -8.26338 -6.29916 0.98430 1.36800 1.41513 1.52435 1.60047 1.68665 2.11255 2.38329 2.82350 2.98356 3.09544 3.66392 3.78462 3.95373 4.00480 4.05228 4.17145 4.18715 4.25241 4.31812 4.32205 4.32343 4.46609 4.54864 4.55323 4.61693 4.66180 4.70509 4.76555 4.81888 4.86973 4.91387 4.98381 5.03025 5.11868 5.13148 5.20409 5.21946 5.26459 5.37222 5.47261 5.55674 5.61329 5.71465 5.77598 6.01579 6.17049 6.35679 6.77973 6.97384 7.11159 7.36077 7.54831 8.90990 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021595 B = 0.002378 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.291147 B =11770.500180 C =12266.194920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.365 6.365 3 C 0.639 3.361 4 O -0.616 6.616 5 N -0.587 5.587 6 C 0.103 3.897 7 C -0.125 4.125 8 C -0.119 4.119 9 C 0.157 3.843 10 H 0.060 0.940 11 N -0.724 5.724 12 C 0.701 3.299 13 O -0.637 6.637 14 N -0.622 5.622 15 C 0.133 3.867 16 C -0.121 4.121 17 C 0.015 3.985 18 C -0.512 4.512 19 H 0.024 0.976 20 C 0.006 3.994 21 N -0.955 5.955 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.295 1.295 25 H -0.234 1.234 26 C -0.114 4.114 27 C 0.116 3.884 28 C 0.118 3.882 29 H 0.144 0.856 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.414 0.586 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.035 0.965 43 H 0.041 0.959 44 H 0.264 0.736 45 H 0.076 0.924 46 H 0.040 0.960 47 H 0.088 0.912 48 H 0.106 0.894 49 H 0.093 0.907 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.704 -32.840 3.952 33.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.278 6.278 3 C 0.394 3.606 4 O -0.508 6.508 5 N -0.328 5.328 6 C -0.018 4.018 7 C -0.163 4.163 8 C -0.157 4.157 9 C 0.051 3.949 10 H 0.078 0.922 11 N -0.383 5.383 12 C 0.403 3.597 13 O -0.518 6.518 14 N -0.358 5.358 15 C 0.009 3.991 16 C -0.160 4.160 17 C -0.004 4.004 18 C -0.550 4.550 19 H 0.042 0.958 20 C -0.190 4.190 21 N -0.595 5.595 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.222 1.222 25 H -0.157 1.157 26 C -0.152 4.152 27 C -0.006 4.006 28 C -0.006 4.006 29 H 0.162 0.838 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.138 0.862 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.254 0.746 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.054 0.946 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.059 0.941 47 H 0.106 0.894 48 H 0.124 0.876 49 H 0.111 0.889 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.702 -32.411 4.287 32.805 hybrid contribution -0.226 1.621 0.011 1.637 sum -2.928 -30.790 4.297 31.226 Atomic orbital electron populations 1.23505 0.73031 1.05784 1.02209 1.86215 1.25489 1.29293 1.86796 1.18369 0.83917 0.82215 0.76138 1.91015 1.65414 1.36707 1.57623 1.46966 1.01464 1.09297 1.75042 1.22159 0.93973 0.84860 1.00780 1.21905 0.98054 0.98451 0.97903 1.21853 0.97313 0.91296 1.05248 1.21066 0.92561 0.83937 0.97369 0.92179 1.45063 1.23947 1.07403 1.61872 1.16072 0.83444 0.81200 0.78990 1.90897 1.20379 1.84871 1.55686 1.47356 1.20191 1.11207 1.57042 1.21382 1.00200 0.83063 0.94408 1.22022 0.99701 0.96450 0.97809 1.19111 0.92883 0.93464 0.94982 1.21292 1.42460 0.94890 0.96393 0.95769 1.26030 0.94934 0.95528 1.02536 1.70083 1.48706 1.03500 1.37205 0.85804 0.79562 0.77682 0.80343 1.19084 1.22172 1.15697 1.21828 1.01561 0.94226 0.97615 1.21914 0.83551 0.99280 0.95861 1.21999 0.95254 0.83259 1.00078 0.83844 0.92754 0.92422 0.88013 0.88492 0.92281 0.86180 0.89175 0.88349 0.74608 0.91049 0.90602 0.92731 0.94632 0.94075 0.92743 0.90556 0.94119 0.89425 0.87636 0.88936 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.71 10.56 113.37 1.20 1.91 16 2 O -0.36 -7.25 9.21 -55.50 -0.51 -7.76 16 3 C 0.64 17.07 8.43 129.79 1.09 18.16 16 4 O -0.62 -22.50 15.55 19.81 0.31 -22.19 16 5 N -0.59 -12.06 2.97 -949.35 -2.82 -14.89 16 6 C 0.10 1.03 6.45 86.36 0.56 1.58 16 7 C -0.12 -0.87 6.08 30.67 0.19 -0.68 16 8 C -0.12 -1.05 5.36 30.62 0.16 -0.88 16 9 C 0.16 3.08 2.56 45.06 0.12 3.20 16 10 H 0.06 1.59 7.65 -2.39 -0.02 1.57 16 11 N -0.72 -15.46 4.99 -457.51 -2.28 -17.74 16 12 C 0.70 22.45 8.26 179.05 1.48 23.93 16 13 O -0.64 -26.54 15.47 -3.99 -0.06 -26.61 16 14 N -0.62 -19.31 2.98 -837.74 -2.50 -21.80 16 15 C 0.13 4.67 6.41 86.22 0.55 5.22 16 16 C -0.12 -5.02 5.07 30.52 0.15 -4.86 16 17 C 0.01 0.63 1.61 -11.51 -0.02 0.61 16 18 C -0.51 -28.46 8.86 25.60 0.23 -28.24 16 19 H 0.02 1.52 8.06 -2.91 -0.02 1.49 16 20 C 0.01 0.34 5.47 84.66 0.46 0.81 16 21 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16 22 Si 0.94 42.82 26.57 68.60 1.82 44.64 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 H -0.23 -9.57 6.10 99.48 0.61 -8.96 16 26 C -0.11 -3.93 5.34 30.67 0.16 -3.77 16 27 C 0.12 2.88 6.39 86.36 0.55 3.43 16 28 C 0.12 2.74 6.01 86.35 0.52 3.26 16 29 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 0.90 6.93 -2.39 -0.02 0.89 16 33 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.41 5.95 6.09 -92.71 -0.56 5.38 16 39 H 0.07 2.69 6.99 -2.39 -0.02 2.67 16 40 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.05 2.34 7.17 -2.39 -0.02 2.32 16 42 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.04 1.71 5.59 -2.39 -0.01 1.69 16 44 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 45 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 46 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.11 1.74 5.65 -2.39 -0.01 1.73 16 49 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.05 1.86 7.00 -2.39 -0.02 1.84 16 Total: -1.00 -85.77 388.29 1.94 -83.83 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.28 Total: 18.10 kcal Atomic # 6 Polarization: 16.27 SS G_CDS: 7.41 Total: 23.68 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -7.30 Total: -113.69 kcal Atomic # 8 Polarization: -56.30 SS G_CDS: -0.26 Total: -56.56 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.82 Total: 44.64 kcal Total: -85.77 1.94 -83.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781801509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.184 kcal (2) G-P(sol) polarization free energy of solvation -85.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds