Wall clock time and date at job start Sat Apr 11 2020 05:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34634 * 117.00032 * 2 1 4 4 O 1.21506 * 119.99725 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00068 * 180.27814 * 3 2 1 6 6 C 1.46929 * 120.62675 * 359.72004 * 5 3 2 7 7 C 1.53198 * 108.77363 * 126.37428 * 6 5 3 8 8 C 1.53044 * 109.31321 * 54.63192 * 7 6 5 9 9 C 1.53047 * 109.53566 * 298.63796 * 8 7 6 10 10 H 1.09000 * 109.49278 * 301.41298 * 9 8 7 11 11 N 1.46503 * 109.49235 * 181.35103 * 9 8 7 12 12 C 1.34775 * 119.99503 * 155.00032 * 11 9 8 13 13 O 1.21587 * 120.00371 * 355.00437 * 12 11 9 14 14 N 1.34781 * 119.99974 * 175.01169 * 12 11 9 15 15 C 1.46926 * 120.63394 * 184.94626 * 14 12 11 16 16 C 1.52757 * 109.00612 * 233.58228 * 15 14 12 17 17 C 1.53041 * 109.38413 * 305.58541 * 16 15 14 18 18 C 1.50697 * 109.45911 * 181.26168 * 17 16 15 19 19 H 1.07996 * 120.00600 * 239.92911 * 18 17 16 20 20 C 1.37882 * 120.00108 * 59.93524 * 18 17 16 21 21 N 1.31520 * 119.99922 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00083 * 180.02562 * 20 18 17 23 23 H 1.48488 * 109.47420 * 59.99773 * 22 20 18 24 24 H 1.48501 * 109.46907 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46965 * 299.99254 * 22 20 18 26 26 C 1.53040 * 109.53705 * 61.24530 * 17 16 15 27 27 C 1.46930 * 120.62577 * 5.22074 * 14 12 11 28 28 C 1.46917 * 120.62998 * 179.44677 * 5 3 2 29 29 H 1.08998 * 109.47262 * 300.00021 * 1 2 3 30 30 H 1.09004 * 109.47225 * 60.00341 * 1 2 3 31 31 H 1.09012 * 109.47000 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.58550 * 246.15816 * 6 5 3 33 33 H 1.09000 * 109.59050 * 6.44153 * 6 5 3 34 34 H 1.09000 * 109.49687 * 174.58531 * 7 6 5 35 35 H 1.09000 * 109.49527 * 294.64643 * 7 6 5 36 36 H 1.08998 * 109.45791 * 58.65479 * 8 7 6 37 37 H 1.08993 * 109.46173 * 178.62854 * 8 7 6 38 38 H 0.96992 * 120.00319 * 334.99610 * 11 9 8 39 39 H 1.09004 * 109.58069 * 353.41385 * 15 14 12 40 40 H 1.08996 * 109.58782 * 113.84010 * 15 14 12 41 41 H 1.09003 * 109.55925 * 185.55163 * 16 15 14 42 42 H 1.08995 * 109.38666 * 65.51743 * 16 15 14 43 43 H 1.08997 * 109.45688 * 301.22065 * 17 16 15 44 44 H 0.97000 * 120.00053 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.49329 * 178.68495 * 26 17 16 46 46 H 1.08996 * 109.52777 * 58.60056 * 26 17 16 47 47 H 1.09001 * 109.58583 * 246.15487 * 27 14 12 48 48 H 1.08995 * 109.58651 * 6.58546 * 27 14 12 49 49 H 1.09000 * 109.58963 * 353.40915 * 28 5 3 50 50 H 1.09000 * 109.59017 * 113.84061 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2186 -0.0005 5 7 3.4092 1.2702 -0.0057 6 6 4.2228 0.0467 -0.0057 7 6 5.2074 0.1095 -1.1778 8 6 6.0187 1.4041 -1.0885 9 6 5.0764 2.6062 -1.1843 10 1 4.5261 2.5631 -2.1241 11 7 5.8571 3.8448 -1.1312 12 6 5.3683 4.9735 -1.6819 13 8 4.3225 4.9443 -2.3014 14 7 6.0388 6.1348 -1.5461 15 6 5.4670 7.3924 -2.0465 16 6 6.4796 8.0663 -2.9706 17 6 7.8102 8.2302 -2.2327 18 6 8.8012 8.9229 -3.1323 19 1 9.7247 8.4305 -3.3988 20 6 8.5289 10.1853 -3.6151 21 7 7.4040 10.7849 -3.2909 22 14 9.7569 11.0436 -4.7308 23 1 9.9673 10.2293 -5.9545 24 1 9.2313 12.3797 -5.1102 25 1 11.0480 11.2042 -4.0149 26 6 8.3520 6.8532 -1.8422 27 6 7.3581 6.1663 -0.9002 28 6 4.0904 2.5717 -0.0180 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0278 0.0005 32 1 4.7747 -0.0251 0.9316 33 1 3.5751 -0.8230 -0.1160 34 1 5.8813 -0.7461 -1.1330 35 1 4.6558 0.0893 -2.1177 36 1 6.5506 1.4344 -0.1376 37 1 6.7369 1.4397 -1.9076 38 1 6.7257 3.8525 -0.6996 39 1 4.5518 7.1827 -2.6003 40 1 5.2459 8.0525 -1.2078 41 1 6.1059 9.0459 -3.2689 42 1 6.6283 7.4485 -3.8562 43 1 7.6560 8.8279 -1.3344 44 1 7.2123 11.6729 -3.6309 45 1 9.3110 6.9694 -1.3374 46 1 8.4834 6.2461 -2.7378 47 1 7.2944 6.7245 0.0339 48 1 7.6903 5.1481 -0.6979 49 1 3.3557 3.3677 -0.1389 50 1 4.6312 2.7100 0.9183 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781801510.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:16 Heat of formation + Delta-G solvation = -105.345427 kcal Electronic energy + Delta-G solvation = -30562.690899 eV Core-core repulsion = 26397.046088 eV Total energy + Delta-G solvation = -4165.644812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.95386 -40.04939 -38.52155 -36.87128 -36.41272 -34.69609 -33.53076 -32.62213 -31.16573 -30.50208 -29.41232 -27.97358 -26.11309 -25.55487 -23.70890 -22.85770 -22.21626 -21.70092 -20.27565 -20.17017 -18.83420 -18.35622 -17.64900 -17.27107 -16.75162 -16.34925 -16.01386 -15.42767 -15.08332 -14.82560 -14.56862 -14.44720 -14.35681 -13.97502 -13.81643 -13.56378 -13.17766 -13.10098 -12.98277 -12.79769 -12.60986 -12.38430 -12.24157 -11.94181 -11.71574 -11.47485 -11.38859 -11.09908 -11.01198 -10.91462 -10.86501 -10.67561 -10.66444 -10.42336 -10.04482 -9.76377 -9.54568 -9.39911 -9.17949 -8.90880 -8.80184 -8.35300 -7.89479 -6.00451 -4.07389 1.83878 2.60775 2.95464 3.30634 3.36071 3.37985 3.53780 3.62723 4.14618 4.41089 4.42109 4.50391 4.55564 4.75769 4.87778 4.96343 4.97926 5.07126 5.15938 5.23984 5.29062 5.35218 5.39779 5.43726 5.55692 5.64426 5.75670 5.78748 5.82924 5.95468 6.00857 6.06684 6.11201 6.29282 6.43665 6.51520 6.61022 6.64456 6.81503 6.98913 7.04755 7.14663 7.25845 7.49688 7.72227 7.94746 8.05489 8.07732 8.29742 8.41534 8.94149 8.95704 9.57515 11.04843 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026048 B = 0.002212 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.681738 B =12655.685857 C =13320.592383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.373 6.373 3 C 0.648 3.352 4 O -0.564 6.564 5 N -0.591 5.591 6 C 0.110 3.890 7 C -0.131 4.131 8 C -0.129 4.129 9 C 0.151 3.849 10 H 0.093 0.907 11 N -0.746 5.746 12 C 0.704 3.296 13 O -0.594 6.594 14 N -0.617 5.617 15 C 0.126 3.874 16 C -0.124 4.124 17 C 0.050 3.950 18 C -0.514 4.514 19 H 0.053 0.947 20 C 0.061 3.939 21 N -0.889 5.889 22 Si 0.891 3.109 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.278 1.278 26 C -0.124 4.124 27 C 0.113 3.887 28 C 0.116 3.884 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.396 0.604 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.104 0.896 42 H 0.037 0.963 43 H 0.027 0.973 44 H 0.261 0.739 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.063 0.937 48 H 0.059 0.941 49 H 0.103 0.897 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.626 -24.440 9.404 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.287 6.287 3 C 0.402 3.598 4 O -0.452 6.452 5 N -0.332 5.332 6 C -0.013 4.013 7 C -0.170 4.170 8 C -0.167 4.167 9 C 0.044 3.956 10 H 0.111 0.889 11 N -0.405 5.405 12 C 0.406 3.594 13 O -0.473 6.473 14 N -0.353 5.353 15 C 0.004 3.996 16 C -0.163 4.163 17 C 0.031 3.969 18 C -0.553 4.553 19 H 0.072 0.928 20 C -0.140 4.140 21 N -0.528 5.528 22 Si 0.719 3.281 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.204 1.204 26 C -0.162 4.162 27 C -0.010 4.010 28 C -0.007 4.007 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.233 0.767 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.122 0.878 42 H 0.056 0.944 43 H 0.045 0.955 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.121 0.879 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.797 -23.952 8.930 26.451 hybrid contribution 1.075 0.584 -0.411 1.291 sum -5.721 -23.368 8.520 25.522 Atomic orbital electron populations 1.23200 0.74436 1.03347 1.02900 1.86201 1.24141 1.31090 1.87239 1.18021 0.83146 0.82162 0.76483 1.91041 1.64037 1.34856 1.55231 1.46794 1.01918 1.08294 1.76188 1.21794 0.93951 0.86647 0.98898 1.21895 0.98153 0.97806 0.99134 1.21840 0.98128 0.93451 1.03292 1.20907 0.92112 0.83000 0.99553 0.88867 1.45222 1.22855 1.08631 1.63743 1.15894 0.83512 0.80374 0.79656 1.90899 1.24745 1.84978 1.46644 1.47466 1.19477 1.06677 1.61685 1.21690 0.97831 0.82061 0.97972 1.21948 0.96385 1.01236 0.96683 1.18615 0.92625 0.89712 0.95910 1.21140 1.03853 1.00550 1.29711 0.92832 1.24971 0.95354 0.97324 0.96341 1.69836 1.23326 1.14556 1.45108 0.86677 0.81510 0.78738 0.81164 1.20372 1.21314 1.20355 1.22013 0.96815 0.99623 0.97753 1.21715 0.83290 0.99403 0.96579 1.22044 0.96152 0.83803 0.98676 0.91871 0.91749 0.88001 0.90944 0.88810 0.89754 0.90919 0.90976 0.90419 0.76679 0.90511 0.92527 0.87830 0.94397 0.95484 0.92878 0.92170 0.92921 0.91873 0.92311 0.87879 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -3.85 9.20 -40.31 -0.37 -4.22 16 3 C 0.65 8.48 8.43 54.06 0.46 8.94 16 4 O -0.56 -9.57 15.54 -19.28 -0.30 -9.87 16 5 N -0.59 -6.37 2.98 -178.83 -0.53 -6.91 16 6 C 0.11 0.75 6.45 -3.71 -0.02 0.73 16 7 C -0.13 -0.80 6.08 -26.61 -0.16 -0.97 16 8 C -0.13 -0.95 5.36 -26.68 -0.14 -1.09 16 9 C 0.15 1.73 2.63 -68.03 -0.18 1.55 16 10 H 0.09 1.35 7.51 -51.93 -0.39 0.96 16 11 N -0.75 -9.62 4.99 -58.77 -0.29 -9.92 16 12 C 0.70 12.60 8.26 -86.92 -0.72 11.89 16 13 O -0.59 -12.98 15.39 5.29 0.08 -12.89 16 14 N -0.62 -11.17 2.98 -178.76 -0.53 -11.70 16 15 C 0.13 2.59 6.41 -3.93 -0.03 2.57 16 16 C -0.12 -2.90 5.14 -26.83 -0.14 -3.03 16 17 C 0.05 1.18 2.07 -91.73 -0.19 0.99 16 18 C -0.51 -13.66 8.56 -34.44 -0.29 -13.96 16 19 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 20 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 21 N -0.89 -24.85 11.30 55.43 0.63 -24.23 16 22 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C -0.12 -2.34 5.30 -26.61 -0.14 -2.49 16 27 C 0.11 1.76 6.39 -3.70 -0.02 1.74 16 28 C 0.12 1.38 5.98 -3.94 -0.02 1.35 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.59 6.92 -51.93 -0.36 0.23 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.40 4.10 6.09 -40.82 -0.25 3.85 16 39 H 0.08 1.64 6.99 -51.93 -0.36 1.27 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.10 2.70 6.03 -51.93 -0.31 2.39 16 42 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.06 0.70 5.65 -51.93 -0.29 0.41 16 49 H 0.10 1.63 7.00 -51.93 -0.36 1.27 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 390.54 15.07 5.89 5.89 Total: -1.00 -33.92 390.54 -9.30 -43.23 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -8.21 Total: 3.38 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: -0.63 Total: 11.27 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.73 Total: -52.75 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.59 Total: -26.99 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.92 -9.30 -43.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781801510.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.120 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds