Wall clock time and date at job start Sat Apr 11 2020 05:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34634 * 117.00032 * 2 1 4 4 O 1.21506 * 119.99725 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00068 * 180.27814 * 3 2 1 6 6 C 1.46929 * 120.62675 * 359.72004 * 5 3 2 7 7 C 1.53198 * 108.77363 * 126.37428 * 6 5 3 8 8 C 1.53044 * 109.31321 * 54.63192 * 7 6 5 9 9 C 1.53047 * 109.53566 * 298.63796 * 8 7 6 10 10 H 1.09000 * 109.49278 * 301.41298 * 9 8 7 11 11 N 1.46503 * 109.49235 * 181.35103 * 9 8 7 12 12 C 1.34775 * 119.99503 * 155.00032 * 11 9 8 13 13 O 1.21587 * 120.00371 * 355.00437 * 12 11 9 14 14 N 1.34781 * 119.99974 * 175.01169 * 12 11 9 15 15 C 1.46926 * 120.63394 * 184.94626 * 14 12 11 16 16 C 1.52757 * 109.00612 * 233.58228 * 15 14 12 17 17 C 1.53041 * 109.38413 * 305.58541 * 16 15 14 18 18 C 1.50697 * 109.45911 * 181.26168 * 17 16 15 19 19 H 1.07996 * 120.00600 * 239.92911 * 18 17 16 20 20 C 1.37882 * 120.00108 * 59.93524 * 18 17 16 21 21 N 1.31520 * 119.99922 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00083 * 180.02562 * 20 18 17 23 23 H 1.48488 * 109.47420 * 59.99773 * 22 20 18 24 24 H 1.48501 * 109.46907 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46965 * 299.99254 * 22 20 18 26 26 C 1.53040 * 109.53705 * 61.24530 * 17 16 15 27 27 C 1.46930 * 120.62577 * 5.22074 * 14 12 11 28 28 C 1.46917 * 120.62998 * 179.44677 * 5 3 2 29 29 H 1.08998 * 109.47262 * 300.00021 * 1 2 3 30 30 H 1.09004 * 109.47225 * 60.00341 * 1 2 3 31 31 H 1.09012 * 109.47000 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.58550 * 246.15816 * 6 5 3 33 33 H 1.09000 * 109.59050 * 6.44153 * 6 5 3 34 34 H 1.09000 * 109.49687 * 174.58531 * 7 6 5 35 35 H 1.09000 * 109.49527 * 294.64643 * 7 6 5 36 36 H 1.08998 * 109.45791 * 58.65479 * 8 7 6 37 37 H 1.08993 * 109.46173 * 178.62854 * 8 7 6 38 38 H 0.96992 * 120.00319 * 334.99610 * 11 9 8 39 39 H 1.09004 * 109.58069 * 353.41385 * 15 14 12 40 40 H 1.08996 * 109.58782 * 113.84010 * 15 14 12 41 41 H 1.09003 * 109.55925 * 185.55163 * 16 15 14 42 42 H 1.08995 * 109.38666 * 65.51743 * 16 15 14 43 43 H 1.08997 * 109.45688 * 301.22065 * 17 16 15 44 44 H 0.97000 * 120.00053 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.49329 * 178.68495 * 26 17 16 46 46 H 1.08996 * 109.52777 * 58.60056 * 26 17 16 47 47 H 1.09001 * 109.58583 * 246.15487 * 27 14 12 48 48 H 1.08995 * 109.58651 * 6.58546 * 27 14 12 49 49 H 1.09000 * 109.58963 * 353.40915 * 28 5 3 50 50 H 1.09000 * 109.59017 * 113.84061 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2186 -0.0005 5 7 3.4092 1.2702 -0.0057 6 6 4.2228 0.0467 -0.0057 7 6 5.2074 0.1095 -1.1778 8 6 6.0187 1.4041 -1.0885 9 6 5.0764 2.6062 -1.1843 10 1 4.5261 2.5631 -2.1241 11 7 5.8571 3.8448 -1.1312 12 6 5.3683 4.9735 -1.6819 13 8 4.3225 4.9443 -2.3014 14 7 6.0388 6.1348 -1.5461 15 6 5.4670 7.3924 -2.0465 16 6 6.4796 8.0663 -2.9706 17 6 7.8102 8.2302 -2.2327 18 6 8.8012 8.9229 -3.1323 19 1 9.7247 8.4305 -3.3988 20 6 8.5289 10.1853 -3.6151 21 7 7.4040 10.7849 -3.2909 22 14 9.7569 11.0436 -4.7308 23 1 9.9673 10.2293 -5.9545 24 1 9.2313 12.3797 -5.1102 25 1 11.0480 11.2042 -4.0149 26 6 8.3520 6.8532 -1.8422 27 6 7.3581 6.1663 -0.9002 28 6 4.0904 2.5717 -0.0180 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0278 0.0005 32 1 4.7747 -0.0251 0.9316 33 1 3.5751 -0.8230 -0.1160 34 1 5.8813 -0.7461 -1.1330 35 1 4.6558 0.0893 -2.1177 36 1 6.5506 1.4344 -0.1376 37 1 6.7369 1.4397 -1.9076 38 1 6.7257 3.8525 -0.6996 39 1 4.5518 7.1827 -2.6003 40 1 5.2459 8.0525 -1.2078 41 1 6.1059 9.0459 -3.2689 42 1 6.6283 7.4485 -3.8562 43 1 7.6560 8.8279 -1.3344 44 1 7.2123 11.6729 -3.6309 45 1 9.3110 6.9694 -1.3374 46 1 8.4834 6.2461 -2.7378 47 1 7.2944 6.7245 0.0339 48 1 7.6903 5.1481 -0.6979 49 1 3.3557 3.3677 -0.1389 50 1 4.6312 2.7100 0.9183 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781801510.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:15 Heat of formation + Delta-G solvation = -128.241035 kcal Electronic energy + Delta-G solvation = -30563.683728 eV Core-core repulsion = 26397.046088 eV Total energy + Delta-G solvation = -4166.637640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.91809 -41.35431 -39.49850 -38.36650 -37.39880 -35.86264 -35.32048 -33.49222 -32.85365 -31.92887 -30.61439 -28.69071 -27.90142 -26.29625 -25.04601 -24.23257 -23.58741 -22.64972 -21.71288 -21.15089 -20.30119 -19.18821 -19.05843 -18.30450 -18.19495 -17.67132 -17.27343 -16.61248 -16.55017 -15.91482 -15.73873 -15.60630 -15.23819 -15.12556 -14.92388 -14.78485 -14.56130 -14.47216 -14.11324 -13.98140 -13.83055 -13.80140 -13.39446 -13.02836 -12.99702 -12.78683 -12.65224 -12.48057 -12.16253 -12.15461 -12.03438 -11.92337 -11.85001 -11.67228 -11.59485 -11.41951 -11.31017 -10.93002 -10.79053 -10.50255 -10.39625 -9.80866 -9.38809 -8.06374 -6.20424 0.98718 1.42477 1.43711 1.50726 1.61731 1.70127 2.12331 2.44500 2.83717 2.99695 3.20121 3.65965 3.79517 3.96703 4.01621 4.10532 4.18671 4.24581 4.32663 4.33242 4.35828 4.46834 4.49508 4.54832 4.62303 4.67024 4.70737 4.73330 4.76513 4.91181 4.91926 4.99479 5.03209 5.13478 5.19831 5.22231 5.22981 5.27144 5.37014 5.48007 5.51443 5.56190 5.66557 5.99210 6.06374 6.13090 6.17669 6.39334 6.91496 7.00352 7.11671 7.47658 7.55857 8.96795 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026048 B = 0.002212 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.681738 B =12655.685857 C =13320.592383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.365 6.365 3 C 0.640 3.360 4 O -0.615 6.615 5 N -0.587 5.587 6 C 0.104 3.896 7 C -0.126 4.126 8 C -0.120 4.120 9 C 0.153 3.847 10 H 0.055 0.945 11 N -0.723 5.723 12 C 0.700 3.300 13 O -0.640 6.640 14 N -0.620 5.620 15 C 0.139 3.861 16 C -0.111 4.111 17 C 0.045 3.955 18 C -0.531 4.531 19 H 0.054 0.946 20 C 0.011 3.989 21 N -0.916 5.916 22 Si 0.951 3.049 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.268 1.268 26 C -0.116 4.116 27 C 0.117 3.883 28 C 0.121 3.879 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.143 0.857 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.414 0.586 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.019 0.981 43 H 0.004 0.996 44 H 0.260 0.740 45 H 0.077 0.923 46 H 0.045 0.955 47 H 0.076 0.924 48 H 0.107 0.893 49 H 0.054 0.946 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.199 -27.693 10.930 29.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.278 6.278 3 C 0.394 3.606 4 O -0.507 6.507 5 N -0.327 5.327 6 C -0.016 4.016 7 C -0.164 4.164 8 C -0.157 4.157 9 C 0.046 3.954 10 H 0.073 0.927 11 N -0.382 5.382 12 C 0.402 3.598 13 O -0.522 6.522 14 N -0.356 5.356 15 C 0.015 3.985 16 C -0.150 4.150 17 C 0.027 3.973 18 C -0.570 4.570 19 H 0.073 0.927 20 C -0.188 4.188 21 N -0.556 5.556 22 Si 0.777 3.223 23 H -0.201 1.201 24 H -0.214 1.214 25 H -0.193 1.193 26 C -0.154 4.154 27 C -0.005 4.005 28 C -0.002 4.002 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.161 0.839 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.138 0.862 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.254 0.746 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.037 0.963 43 H 0.022 0.978 44 H 0.069 0.931 45 H 0.095 0.905 46 H 0.064 0.936 47 H 0.095 0.905 48 H 0.125 0.875 49 H 0.072 0.928 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.300 -27.285 10.490 29.547 hybrid contribution 0.275 1.548 -0.896 1.809 sum -4.025 -25.737 9.594 27.761 Atomic orbital electron populations 1.23507 0.73018 1.05783 1.02224 1.86215 1.25504 1.29319 1.86782 1.18355 0.83885 0.82226 0.76116 1.91006 1.65393 1.36667 1.57636 1.46955 1.01485 1.09279 1.75019 1.22147 0.93942 0.84890 1.00624 1.21910 0.98201 0.98368 0.97930 1.21851 0.97286 0.91414 1.05191 1.21005 0.92854 0.83936 0.97562 0.92669 1.45017 1.23322 1.07488 1.62363 1.16093 0.82943 0.81243 0.79516 1.90876 1.26926 1.85739 1.48690 1.47405 1.20528 1.05869 1.61817 1.21309 0.96423 0.83360 0.97379 1.21705 0.97321 0.99396 0.96607 1.18604 0.92181 0.92174 0.94382 1.21571 1.04424 1.00944 1.30018 0.92741 1.25743 0.96960 0.98275 0.97816 1.69982 1.24802 1.14670 1.46150 0.85724 0.79679 0.77490 0.79419 1.20115 1.21362 1.19319 1.21870 0.98321 0.96725 0.98494 1.21861 0.80850 1.02126 0.95644 1.21882 0.95097 0.83277 0.99980 0.92245 0.92869 0.83885 0.88132 0.88007 0.86203 0.92619 0.87921 0.89843 0.74601 0.92029 0.92151 0.91055 0.96255 0.97753 0.93126 0.90489 0.93602 0.90545 0.87499 0.92756 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.70 10.56 113.37 1.20 1.90 16 2 O -0.37 -7.25 9.20 -55.44 -0.51 -7.76 16 3 C 0.64 16.95 8.43 129.79 1.09 18.05 16 4 O -0.62 -22.14 15.54 19.82 0.31 -21.83 16 5 N -0.59 -12.02 2.98 -950.09 -2.83 -14.85 16 6 C 0.10 1.07 6.45 86.36 0.56 1.63 16 7 C -0.13 -1.07 6.08 30.68 0.19 -0.88 16 8 C -0.12 -1.28 5.36 30.62 0.16 -1.12 16 9 C 0.15 3.29 2.63 44.93 0.12 3.41 16 10 H 0.05 1.64 7.51 -2.39 -0.02 1.62 16 11 N -0.72 -17.19 4.99 -458.11 -2.29 -19.48 16 12 C 0.70 24.96 8.26 179.05 1.48 26.44 16 13 O -0.64 -29.16 15.39 -3.99 -0.06 -29.22 16 14 N -0.62 -22.14 2.98 -837.72 -2.50 -24.64 16 15 C 0.14 5.89 6.41 86.22 0.55 6.44 16 16 C -0.11 -5.42 5.14 30.53 0.16 -5.26 16 17 C 0.05 2.16 2.07 -11.51 -0.02 2.14 16 18 C -0.53 -28.48 8.56 25.60 0.22 -28.26 16 19 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 20 C 0.01 0.58 5.30 84.66 0.45 1.03 16 21 N -0.92 -52.72 11.30 21.45 0.24 -52.48 16 22 Si 0.95 43.39 29.54 68.60 2.03 45.41 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 C -0.12 -4.20 5.30 30.67 0.16 -4.03 16 27 C 0.12 3.33 6.39 86.36 0.55 3.88 16 28 C 0.12 2.79 5.98 86.22 0.52 3.30 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.14 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.10 0.93 6.92 -2.39 -0.02 0.92 16 34 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.41 6.81 6.09 -92.71 -0.56 6.24 16 39 H 0.06 2.78 6.99 -2.39 -0.02 2.77 16 40 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.07 3.93 6.03 -2.39 -0.01 3.92 16 42 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 44 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 45 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.11 2.02 5.65 -2.39 -0.01 2.01 16 49 H 0.05 1.82 7.00 -2.39 -0.02 1.80 16 50 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -80.63 390.54 2.15 -78.48 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.38 Total: 17.71 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: 7.38 Total: 28.65 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -7.37 Total: -111.44 kcal Atomic # 8 Polarization: -58.55 SS G_CDS: -0.26 Total: -58.82 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -80.63 2.15 -78.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781801510.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.759 kcal (2) G-P(sol) polarization free energy of solvation -80.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds