Wall clock time and date at job start Sat Apr 11 2020 05:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 N 1.46298 * 114.00034 * 2 1 4 4 C 1.46893 * 111.00021 * 235.65633 * 3 2 1 5 5 C 1.50693 * 109.47200 * 66.04836 * 4 3 2 6 6 O 1.21278 * 120.00422 * 359.97438 * 5 4 3 7 7 N 1.34779 * 120.00266 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00533 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.46939 * 89.99854 * 8 7 5 10 10 H 1.08000 * 120.00512 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00049 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99916 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00326 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47039 * 59.99507 * 13 11 9 15 15 H 1.48498 * 109.47308 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46840 * 300.00074 * 13 11 9 17 17 C 1.46505 * 119.99641 * 0.02562 * 7 5 4 18 18 C 1.52992 * 109.47476 * 90.00121 * 17 7 5 19 19 C 1.47200 * 109.47638 * 179.97438 * 18 17 7 20 20 N 7.20298 * 148.01125 * 281.32421 * 2 1 3 21 21 C 1.46905 * 110.99734 * 111.70240 * 3 2 1 22 22 C 1.53003 * 109.46866 * 291.42762 * 21 3 2 23 23 C 1.53185 * 109.53891 * 175.72960 * 22 21 3 24 24 C 1.53098 * 109.15997 * 176.84889 * 23 22 21 25 25 O 1.42904 * 109.41240 * 302.39243 * 24 23 22 26 26 C 1.42905 * 114.09942 * 61.16404 * 25 24 23 27 27 C 1.53092 * 109.41196 * 298.83463 * 26 25 24 28 28 H 1.08997 * 109.47159 * 173.98914 * 1 2 3 29 29 H 1.09001 * 109.47110 * 293.98944 * 1 2 3 30 30 H 1.09006 * 109.46641 * 53.98912 * 1 2 3 31 31 H 1.09001 * 109.47167 * 186.04649 * 4 3 2 32 32 H 1.08999 * 109.46961 * 306.04333 * 4 3 2 33 33 H 1.08995 * 109.47364 * 209.99971 * 8 7 5 34 34 H 1.09005 * 109.46723 * 329.99926 * 8 7 5 35 35 H 0.96997 * 120.00133 * 179.97438 * 12 11 9 36 36 H 1.09005 * 109.46755 * 210.00060 * 17 7 5 37 37 H 1.09003 * 109.46970 * 329.99890 * 17 7 5 38 38 H 1.09001 * 109.47063 * 300.00253 * 18 17 7 39 39 H 1.09003 * 109.47210 * 59.99916 * 18 17 7 40 40 H 1.08993 * 109.46746 * 171.43166 * 21 3 2 41 41 H 1.08992 * 109.47153 * 51.42654 * 21 3 2 42 42 H 1.09002 * 109.61614 * 55.51565 * 22 21 3 43 43 H 1.08992 * 109.52219 * 296.75404 * 23 22 21 44 44 H 1.08994 * 109.51977 * 56.94640 * 23 22 21 45 45 H 1.08996 * 109.47792 * 182.40821 * 24 23 22 46 46 H 1.09000 * 109.48105 * 62.37585 * 24 23 22 47 47 H 1.08993 * 109.47781 * 178.85801 * 26 25 24 48 48 H 1.08996 * 109.49216 * 58.82524 * 26 25 24 49 49 H 1.08998 * 109.52471 * 297.71030 * 27 26 25 50 50 H 1.09001 * 109.52319 * 177.51431 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0242 1.3365 0.0000 4 6 2.9450 1.5027 -1.1323 5 6 2.1681 1.4563 -2.4227 6 8 0.9657 1.2996 -2.4013 7 7 2.8096 1.5878 -3.6007 8 6 2.0544 1.5421 -4.8552 9 6 1.6136 2.9343 -5.2272 10 1 1.8699 3.7697 -4.5924 11 6 0.8821 3.1417 -6.3774 12 7 0.5687 2.1243 -7.1497 13 14 0.3363 4.8675 -6.8388 14 1 1.5295 5.7345 -7.0112 15 1 -0.4303 4.8210 -8.1098 16 1 -0.5247 5.4189 -5.7618 17 6 4.2624 1.7754 -3.6267 18 6 4.9516 0.4113 -3.6954 19 6 6.4113 0.5997 -3.7221 20 7 7.5383 0.7493 -3.7415 21 6 2.7016 1.6111 1.2743 22 6 1.6606 1.7360 2.3886 23 6 2.3699 1.9161 3.7344 24 6 1.3216 2.1189 4.8317 25 8 0.5094 3.2497 4.5095 26 6 -0.2148 3.1179 3.2846 27 6 0.7716 2.9553 2.1252 28 1 -0.3633 -1.0220 -0.1076 29 1 -0.3633 0.4178 0.9389 30 1 -0.3633 0.6043 -0.8314 31 1 3.4538 2.4631 -1.0489 32 1 3.6816 0.6994 -1.1225 33 1 2.6869 1.1379 -5.6456 34 1 1.1788 0.9052 -4.7292 35 1 0.0538 2.2701 -7.9586 36 1 4.5369 2.3657 -4.5010 37 1 4.5776 2.2966 -2.7227 38 1 4.6770 -0.1790 -2.8212 39 1 4.6364 -0.1100 -4.5993 40 1 3.2619 2.5426 1.1945 41 1 3.3853 0.7944 1.5057 42 1 1.0461 0.8362 2.4179 43 1 2.9618 1.0282 3.9558 44 1 3.0223 2.7880 3.6884 45 1 1.8217 2.2903 5.7848 46 1 0.6949 1.2301 4.9044 47 1 -0.8214 4.0090 3.1234 48 1 -0.8617 2.2423 3.3370 49 1 1.3920 3.8481 2.0468 50 1 0.2208 2.8105 1.1958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801604181.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:24 Heat of formation + Delta-G solvation = -53.620909 kcal Electronic energy + Delta-G solvation = -30664.280582 eV Core-core repulsion = 26500.878714 eV Total energy + Delta-G solvation = -4163.401868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.72459 -39.22885 -37.23157 -36.74204 -35.18114 -34.75658 -33.17460 -32.67535 -31.26159 -30.84560 -28.81331 -27.13949 -26.15432 -24.69517 -23.99952 -23.67047 -22.68249 -21.71721 -20.26685 -18.56609 -17.68810 -16.87731 -16.74659 -16.47088 -16.30430 -16.09150 -15.63908 -15.45330 -14.89815 -14.84522 -14.70954 -14.50226 -14.36656 -14.03860 -13.71938 -13.67471 -13.30687 -12.94870 -12.82644 -12.66833 -12.46405 -12.44161 -12.27947 -12.17893 -11.91985 -11.67075 -11.51597 -11.48373 -11.27847 -11.01857 -10.94092 -10.86956 -10.71283 -10.61028 -10.44280 -10.19464 -9.76736 -9.71355 -9.63213 -8.97960 -8.56349 -8.47316 -7.83260 -6.09067 -4.13681 2.62795 2.70613 2.78100 3.29776 3.33340 3.34807 3.39217 3.61561 3.70052 4.09581 4.37608 4.42976 4.55120 4.64247 4.84131 4.88466 4.95530 5.03934 5.09771 5.13116 5.18590 5.22890 5.26010 5.28710 5.35142 5.37616 5.47764 5.50021 5.53029 5.63530 5.65505 5.72015 5.77226 5.80404 5.89889 5.92618 6.04650 6.10629 6.24143 6.35147 6.56837 6.97312 7.01276 7.13354 7.36542 7.44306 7.55011 7.87201 8.17230 8.26738 8.85443 9.02666 9.51939 10.98966 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009352 B = 0.003239 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.273354 B = 8643.419847 C =10485.253470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.253 6.253 3 N -0.348 5.348 4 C 0.021 3.979 5 C 0.515 3.485 6 O -0.511 6.511 7 N -0.600 5.600 8 C 0.248 3.752 9 C -0.528 4.528 10 H 0.057 0.943 11 C 0.063 3.937 12 N -0.894 5.894 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.119 3.881 18 C -0.051 4.051 19 C 0.217 3.783 20 N -0.446 5.446 21 C 0.047 3.953 22 C -0.082 4.082 23 C -0.151 4.151 24 C 0.063 3.937 25 O -0.386 6.386 26 C 0.059 3.941 27 C -0.146 4.146 28 H 0.077 0.923 29 H 0.029 0.971 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.033 0.967 34 H 0.046 0.954 35 H 0.264 0.736 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.048 0.952 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.091 0.909 46 H 0.048 0.952 47 H 0.093 0.907 48 H 0.048 0.952 49 H 0.069 0.931 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.807 -2.999 19.411 20.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.259 6.259 3 N -0.115 5.115 4 C -0.110 4.110 5 C 0.300 3.700 6 O -0.385 6.385 7 N -0.333 5.333 8 C 0.129 3.871 9 C -0.567 4.567 10 H 0.076 0.924 11 C -0.139 4.139 12 N -0.533 5.533 13 Si 0.724 3.276 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.008 4.008 18 C -0.093 4.093 19 C -0.101 4.101 20 N -0.123 5.123 21 C -0.081 4.081 22 C -0.101 4.101 23 C -0.189 4.189 24 C -0.014 4.014 25 O -0.305 6.305 26 C -0.017 4.017 27 C -0.183 4.183 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.129 0.871 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.123 0.877 39 H 0.136 0.864 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.109 0.891 46 H 0.066 0.934 47 H 0.111 0.889 48 H 0.066 0.934 49 H 0.087 0.913 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.415 -2.612 19.251 19.923 hybrid contribution -0.039 0.152 -0.532 0.555 sum 4.376 -2.460 18.720 19.381 Atomic orbital electron populations 1.22721 0.80411 1.01582 1.00995 1.90597 1.21464 1.16919 1.96884 1.67270 1.32434 1.10271 1.01561 1.22418 0.94608 1.02880 0.91083 1.19937 0.88176 0.77705 0.84159 1.90613 1.14102 1.47420 1.86379 1.48200 1.05703 1.71280 1.08118 1.19306 0.91851 0.97793 0.78106 1.21382 1.34690 0.93342 1.07273 0.92431 1.24910 0.95662 0.97150 0.96220 1.69909 1.38873 1.30253 1.14277 0.86588 0.78814 0.84466 0.77739 1.20269 1.21238 1.20164 1.21287 0.81812 0.93639 1.04075 1.19919 0.81189 1.01748 1.06399 1.29170 0.95057 0.93122 0.92774 1.81255 1.12969 1.08701 1.09398 1.22488 0.95588 1.00963 0.89074 1.21136 0.96725 0.99266 0.92989 1.22226 0.98830 1.02649 0.95192 1.22521 0.92116 0.89146 0.97628 1.87919 1.61374 1.40768 1.40468 1.22638 0.93487 1.01904 0.83704 1.22190 0.98680 0.97999 0.99463 0.90455 0.95213 0.90470 0.87073 0.91276 0.94865 0.93609 0.92636 0.88700 0.90929 0.87689 0.86444 0.89339 0.93349 0.90516 0.90988 0.90922 0.89098 0.93355 0.88885 0.93371 0.91259 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.87 101.05 1.10 1.66 16 2 O -0.25 -3.76 9.94 -27.56 -0.27 -4.04 16 3 N -0.35 -4.63 3.85 -115.07 -0.44 -5.08 16 4 C 0.02 0.28 4.31 -4.98 -0.02 0.26 16 5 C 0.51 9.22 7.58 -10.99 -0.08 9.14 16 6 O -0.51 -11.31 13.17 -8.08 -0.11 -11.42 16 7 N -0.60 -10.65 2.46 -175.06 -0.43 -11.08 16 8 C 0.25 5.76 5.16 -5.19 -0.03 5.73 16 9 C -0.53 -13.86 9.39 -34.44 -0.32 -14.18 16 10 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 13 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 C 0.12 1.52 5.17 -4.04 -0.02 1.50 16 18 C -0.05 -0.53 6.03 -29.52 -0.18 -0.70 16 19 C 0.22 2.58 15.44 -20.72 -0.32 2.26 16 20 N -0.45 -6.47 18.54 42.20 0.78 -5.68 16 21 C 0.05 0.48 4.68 -3.82 -0.02 0.46 16 22 C -0.08 -0.78 2.23 -90.43 -0.20 -0.99 16 23 C -0.15 -1.18 5.42 -26.58 -0.14 -1.33 16 24 C 0.06 0.51 6.84 37.21 0.25 0.77 16 25 O -0.39 -4.11 10.77 -35.23 -0.38 -4.49 16 26 C 0.06 0.57 6.84 37.20 0.25 0.82 16 27 C -0.15 -1.49 5.27 -26.59 -0.14 -1.63 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.03 0.36 7.00 -51.93 -0.36 -0.01 16 30 H 0.08 1.32 6.13 -51.93 -0.32 1.00 16 31 H 0.11 1.19 7.16 -51.93 -0.37 0.82 16 32 H 0.07 0.76 7.19 -51.93 -0.37 0.39 16 33 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 34 H 0.05 1.22 7.42 -51.93 -0.39 0.84 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 37 H 0.07 0.75 6.44 -51.93 -0.33 0.41 16 38 H 0.11 0.91 7.22 -51.93 -0.38 0.54 16 39 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.09 0.78 7.88 -51.93 -0.41 0.37 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.81 6.56 -51.93 -0.34 0.47 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.09 1.06 7.85 -51.93 -0.41 0.66 16 LS Contribution 408.08 15.07 6.15 6.15 Total: -1.00 -32.89 408.08 -7.24 -40.13 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -8.29 Total: -1.30 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 0.03 Total: 5.36 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.65 Total: -46.41 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.76 Total: -19.94 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.89 -7.24 -40.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801604181.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.490 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds