Wall clock time and date at job start Sat Apr 11 2020 05:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 N 1.46298 * 114.00034 * 2 1 4 4 C 1.46893 * 111.00021 * 235.65633 * 3 2 1 5 5 C 1.50693 * 109.47200 * 66.04836 * 4 3 2 6 6 O 1.21278 * 120.00422 * 359.97438 * 5 4 3 7 7 N 1.34779 * 120.00266 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00533 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.46939 * 89.99854 * 8 7 5 10 10 H 1.08000 * 120.00512 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00049 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99916 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00326 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47039 * 59.99507 * 13 11 9 15 15 H 1.48498 * 109.47308 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46840 * 300.00074 * 13 11 9 17 17 C 1.46505 * 119.99641 * 0.02562 * 7 5 4 18 18 C 1.52992 * 109.47476 * 90.00121 * 17 7 5 19 19 C 1.47200 * 109.47638 * 179.97438 * 18 17 7 20 20 N 7.20298 * 148.01125 * 281.32421 * 2 1 3 21 21 C 1.46905 * 110.99734 * 111.70240 * 3 2 1 22 22 C 1.53003 * 109.46866 * 291.42762 * 21 3 2 23 23 C 1.53185 * 109.53891 * 175.72960 * 22 21 3 24 24 C 1.53098 * 109.15997 * 176.84889 * 23 22 21 25 25 O 1.42904 * 109.41240 * 302.39243 * 24 23 22 26 26 C 1.42905 * 114.09942 * 61.16404 * 25 24 23 27 27 C 1.53092 * 109.41196 * 298.83463 * 26 25 24 28 28 H 1.08997 * 109.47159 * 173.98914 * 1 2 3 29 29 H 1.09001 * 109.47110 * 293.98944 * 1 2 3 30 30 H 1.09006 * 109.46641 * 53.98912 * 1 2 3 31 31 H 1.09001 * 109.47167 * 186.04649 * 4 3 2 32 32 H 1.08999 * 109.46961 * 306.04333 * 4 3 2 33 33 H 1.08995 * 109.47364 * 209.99971 * 8 7 5 34 34 H 1.09005 * 109.46723 * 329.99926 * 8 7 5 35 35 H 0.96997 * 120.00133 * 179.97438 * 12 11 9 36 36 H 1.09005 * 109.46755 * 210.00060 * 17 7 5 37 37 H 1.09003 * 109.46970 * 329.99890 * 17 7 5 38 38 H 1.09001 * 109.47063 * 300.00253 * 18 17 7 39 39 H 1.09003 * 109.47210 * 59.99916 * 18 17 7 40 40 H 1.08993 * 109.46746 * 171.43166 * 21 3 2 41 41 H 1.08992 * 109.47153 * 51.42654 * 21 3 2 42 42 H 1.09002 * 109.61614 * 55.51565 * 22 21 3 43 43 H 1.08992 * 109.52219 * 296.75404 * 23 22 21 44 44 H 1.08994 * 109.51977 * 56.94640 * 23 22 21 45 45 H 1.08996 * 109.47792 * 182.40821 * 24 23 22 46 46 H 1.09000 * 109.48105 * 62.37585 * 24 23 22 47 47 H 1.08993 * 109.47781 * 178.85801 * 26 25 24 48 48 H 1.08996 * 109.49216 * 58.82524 * 26 25 24 49 49 H 1.08998 * 109.52471 * 297.71030 * 27 26 25 50 50 H 1.09001 * 109.52319 * 177.51431 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0242 1.3365 0.0000 4 6 2.9450 1.5027 -1.1323 5 6 2.1681 1.4563 -2.4227 6 8 0.9657 1.2996 -2.4013 7 7 2.8096 1.5878 -3.6007 8 6 2.0544 1.5421 -4.8552 9 6 1.6136 2.9343 -5.2272 10 1 1.8699 3.7697 -4.5924 11 6 0.8821 3.1417 -6.3774 12 7 0.5687 2.1243 -7.1497 13 14 0.3363 4.8675 -6.8388 14 1 1.5295 5.7345 -7.0112 15 1 -0.4303 4.8210 -8.1098 16 1 -0.5247 5.4189 -5.7618 17 6 4.2624 1.7754 -3.6267 18 6 4.9516 0.4113 -3.6954 19 6 6.4113 0.5997 -3.7221 20 7 7.5383 0.7493 -3.7415 21 6 2.7016 1.6111 1.2743 22 6 1.6606 1.7360 2.3886 23 6 2.3699 1.9161 3.7344 24 6 1.3216 2.1189 4.8317 25 8 0.5094 3.2497 4.5095 26 6 -0.2148 3.1179 3.2846 27 6 0.7716 2.9553 2.1252 28 1 -0.3633 -1.0220 -0.1076 29 1 -0.3633 0.4178 0.9389 30 1 -0.3633 0.6043 -0.8314 31 1 3.4538 2.4631 -1.0489 32 1 3.6816 0.6994 -1.1225 33 1 2.6869 1.1379 -5.6456 34 1 1.1788 0.9052 -4.7292 35 1 0.0538 2.2701 -7.9586 36 1 4.5369 2.3657 -4.5010 37 1 4.5776 2.2966 -2.7227 38 1 4.6770 -0.1790 -2.8212 39 1 4.6364 -0.1100 -4.5993 40 1 3.2619 2.5426 1.1945 41 1 3.3853 0.7944 1.5057 42 1 1.0461 0.8362 2.4179 43 1 2.9618 1.0282 3.9558 44 1 3.0223 2.7880 3.6884 45 1 1.8217 2.2903 5.7848 46 1 0.6949 1.2301 4.9044 47 1 -0.8214 4.0090 3.1234 48 1 -0.8617 2.2423 3.3370 49 1 1.3920 3.8481 2.0468 50 1 0.2208 2.8105 1.1958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801604181.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:22 Heat of formation + Delta-G solvation = -74.160546 kcal Electronic energy + Delta-G solvation = -30665.171248 eV Core-core repulsion = 26500.878714 eV Total energy + Delta-G solvation = -4164.292534 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.76706 -40.28133 -38.24564 -37.82435 -36.55072 -35.66040 -34.87742 -33.87932 -32.12909 -31.95304 -30.06746 -28.52148 -27.30825 -25.80662 -25.27581 -24.43613 -24.06296 -22.67820 -21.02207 -19.88702 -18.82174 -18.33354 -17.95461 -17.86211 -17.15702 -16.93876 -16.83022 -16.43412 -16.31066 -15.86674 -15.71139 -15.61000 -15.44614 -15.27184 -14.75971 -14.62741 -14.34326 -14.27933 -14.01299 -13.67273 -13.61223 -13.52738 -13.35907 -13.20102 -13.14269 -12.93128 -12.77601 -12.68985 -12.50678 -12.47480 -12.19296 -12.13685 -11.83386 -11.75376 -11.64902 -11.42873 -11.16944 -10.78700 -10.55661 -10.46890 -10.33012 -9.56968 -9.38228 -8.14956 -6.26965 1.41721 1.44593 1.50999 1.62446 1.70625 1.83204 2.02103 2.31691 2.47883 3.01799 3.09272 3.17074 3.55247 3.79510 3.84732 3.95775 4.05013 4.12800 4.14698 4.22396 4.30785 4.34023 4.42730 4.48394 4.55046 4.61685 4.65414 4.68224 4.73752 4.83060 4.84940 4.86186 4.89418 4.99084 5.02924 5.07111 5.12327 5.15543 5.21315 5.32627 5.37960 5.47111 5.65535 5.74891 5.94745 6.08877 6.17128 6.31514 6.60414 6.80568 6.87445 7.39207 7.64269 8.91367 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009352 B = 0.003239 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.273354 B = 8643.419847 C =10485.253470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.269 6.269 3 N -0.363 5.363 4 C 0.030 3.970 5 C 0.506 3.494 6 O -0.562 6.562 7 N -0.601 5.601 8 C 0.265 3.735 9 C -0.537 4.537 10 H 0.054 0.946 11 C 0.011 3.989 12 N -0.927 5.927 13 Si 0.956 3.044 14 H -0.263 1.263 15 H -0.284 1.284 16 H -0.279 1.279 17 C 0.114 3.886 18 C -0.038 4.038 19 C 0.246 3.754 20 N -0.488 5.488 21 C 0.048 3.952 22 C -0.079 4.079 23 C -0.143 4.143 24 C 0.056 3.944 25 O -0.404 6.404 26 C 0.059 3.941 27 C -0.140 4.140 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.040 0.960 31 H 0.143 0.857 32 H 0.099 0.901 33 H 0.031 0.969 34 H 0.002 0.998 35 H 0.264 0.736 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.132 0.868 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.108 0.892 46 H 0.052 0.948 47 H 0.096 0.904 48 H 0.050 0.950 49 H 0.067 0.933 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.675 -2.401 21.331 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.274 6.274 3 N -0.132 5.132 4 C -0.101 4.101 5 C 0.293 3.707 6 O -0.440 6.440 7 N -0.333 5.333 8 C 0.143 3.857 9 C -0.575 4.575 10 H 0.073 0.927 11 C -0.188 4.188 12 N -0.568 5.568 13 Si 0.781 3.219 14 H -0.188 1.188 15 H -0.210 1.210 16 H -0.205 1.205 17 C -0.010 4.010 18 C -0.079 4.079 19 C -0.071 4.071 20 N -0.166 5.166 21 C -0.080 4.080 22 C -0.098 4.098 23 C -0.181 4.181 24 C -0.020 4.020 25 O -0.323 6.323 26 C -0.017 4.017 27 C -0.178 4.178 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.160 0.840 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.020 0.980 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.126 0.874 38 H 0.149 0.851 39 H 0.136 0.864 40 H 0.126 0.874 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.095 0.905 45 H 0.126 0.874 46 H 0.070 0.930 47 H 0.114 0.886 48 H 0.068 0.932 49 H 0.086 0.914 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.336 -2.017 21.196 22.214 hybrid contribution -0.637 -0.045 -1.090 1.263 sum 5.699 -2.062 20.105 20.999 Atomic orbital electron populations 1.22601 0.80414 1.01653 1.00136 1.90541 1.21490 1.18460 1.96909 1.67273 1.33547 1.09358 1.03021 1.22425 0.94078 1.05576 0.88016 1.20903 0.88009 0.76199 0.85540 1.90612 1.16648 1.49520 1.87220 1.48064 1.07557 1.71229 1.06484 1.18719 0.90949 0.95434 0.80561 1.21737 1.34280 0.94536 1.06989 0.92726 1.25714 0.95948 1.00692 0.96468 1.70022 1.39828 1.32151 1.14759 0.85641 0.78686 0.80337 0.77189 1.18772 1.20953 1.20495 1.21512 0.78790 0.95298 1.05446 1.19827 0.79812 1.00520 1.07743 1.29175 0.94841 0.91784 0.91334 1.81301 1.14292 1.10032 1.11012 1.22607 0.95699 1.02194 0.87468 1.21104 0.96560 0.98179 0.93990 1.22173 0.98620 1.03549 0.93750 1.22723 0.92147 0.88634 0.98539 1.87896 1.61850 1.42025 1.40554 1.22633 0.93424 1.02206 0.83446 1.22096 0.98719 0.98408 0.98577 0.89366 0.93758 0.94169 0.83989 0.88292 0.95141 0.98029 0.92677 0.89787 0.87408 0.85056 0.86417 0.87434 0.92097 0.91678 0.89376 0.90542 0.87441 0.93017 0.88633 0.93152 0.91400 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.39 10.87 113.37 1.23 2.63 16 2 O -0.27 -7.76 9.94 -37.12 -0.37 -8.13 16 3 N -0.36 -8.98 3.85 -517.96 -1.99 -10.98 16 4 C 0.03 0.68 4.31 85.56 0.37 1.05 16 5 C 0.51 17.77 7.58 87.65 0.66 18.43 16 6 O -0.56 -25.69 13.17 10.02 0.13 -25.56 16 7 N -0.60 -20.93 2.46 -826.16 -2.03 -22.96 16 8 C 0.26 12.61 5.16 85.63 0.44 13.05 16 9 C -0.54 -28.60 9.39 25.60 0.24 -28.36 16 10 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 11 C 0.01 0.59 5.46 84.65 0.46 1.05 16 12 N -0.93 -53.73 13.29 21.45 0.28 -53.44 16 13 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 14 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 17 C 0.11 2.65 5.17 86.38 0.45 3.10 16 18 C -0.04 -0.67 6.03 28.79 0.17 -0.50 16 19 C 0.25 5.20 15.44 89.43 1.38 6.58 16 20 N -0.49 -13.22 18.54 20.02 0.37 -12.84 16 21 C 0.05 0.81 4.68 86.30 0.40 1.22 16 22 C -0.08 -1.35 2.23 -10.67 -0.02 -1.37 16 23 C -0.14 -1.83 5.42 30.69 0.17 -1.66 16 24 C 0.06 0.79 6.84 72.01 0.49 1.28 16 25 O -0.40 -8.00 10.77 -148.98 -1.60 -9.60 16 26 C 0.06 1.10 6.84 72.01 0.49 1.59 16 27 C -0.14 -2.74 5.27 30.69 0.16 -2.57 16 28 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.04 1.08 7.00 -2.39 -0.02 1.06 16 30 H 0.04 1.44 6.13 -2.38 -0.01 1.43 16 31 H 0.14 2.40 7.16 -2.39 -0.02 2.38 16 32 H 0.10 1.72 7.19 -2.39 -0.02 1.70 16 33 H 0.03 1.45 8.07 -2.39 -0.02 1.43 16 34 H 0.00 0.09 7.42 -2.38 -0.02 0.07 16 35 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.08 2.18 8.07 -2.38 -0.02 2.16 16 37 H 0.11 1.77 6.44 -2.39 -0.02 1.76 16 38 H 0.13 1.75 7.22 -2.39 -0.02 1.73 16 39 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.11 1.46 7.88 -2.39 -0.02 1.44 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 1.27 6.56 -2.39 -0.02 1.26 16 43 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 44 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.07 1.60 7.85 -2.39 -0.02 1.58 16 Total: -1.00 -74.64 408.08 4.85 -69.79 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.93 Total: 12.80 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 7.10 Total: 15.52 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -3.37 Total: -100.23 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -1.84 Total: -43.29 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -74.64 4.85 -69.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801604181.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.371 kcal (2) G-P(sol) polarization free energy of solvation -74.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds