Wall clock time and date at job start Sat Apr 11 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99732 * 2 1 4 4 C 1.52997 * 109.47235 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47378 * 64.99806 * 4 3 2 6 6 C 1.46769 * 124.34819 * 269.73240 * 5 4 3 7 7 C 1.54306 * 105.56185 * 196.88155 * 6 5 4 8 8 H 1.08995 * 110.74601 * 92.99793 * 7 6 5 9 9 C 1.50696 * 111.14963 * 216.69218 * 7 6 5 10 10 O 1.21286 * 120.00093 * 354.03270 * 9 7 6 11 11 N 1.34773 * 120.00093 * 174.02884 * 9 7 6 12 12 C 1.46508 * 120.00225 * 179.97438 * 11 9 7 13 13 H 1.08993 * 109.49621 * 325.00852 * 12 11 9 14 14 C 1.53039 * 109.49846 * 204.94041 * 12 11 9 15 15 C 1.53039 * 109.53680 * 178.71726 * 14 12 11 16 16 C 1.53198 * 109.33904 * 61.31975 * 15 14 12 17 17 N 1.46930 * 108.77416 * 305.37887 * 16 15 14 18 18 C 1.36939 * 120.63226 * 233.63634 * 17 16 15 19 19 H 1.08000 * 119.99910 * 27.65891 * 18 17 16 20 20 C 1.38813 * 120.00112 * 207.66740 * 18 17 16 21 21 N 1.31617 * 119.99755 * 17.35239 * 20 18 17 22 22 Si 1.86796 * 120.00096 * 197.35722 * 20 18 17 23 23 H 1.48505 * 109.46893 * 89.99576 * 22 20 18 24 24 H 1.48493 * 109.47423 * 209.99428 * 22 20 18 25 25 H 1.48495 * 109.47180 * 330.00057 * 22 20 18 26 26 C 1.46921 * 118.74035 * 53.60798 * 17 16 15 27 27 C 1.54625 * 101.84279 * 334.93442 * 7 6 5 28 28 C 1.34420 * 124.35056 * 90.02446 * 5 4 3 29 29 O 1.21282 * 124.94184 * 359.61553 * 28 5 4 30 30 H 1.09004 * 109.47228 * 300.00052 * 1 2 3 31 31 H 1.09002 * 109.47526 * 60.00266 * 1 2 3 32 32 H 1.09000 * 109.47420 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47210 * 60.00007 * 3 2 1 34 34 H 1.09006 * 109.47387 * 299.99654 * 3 2 1 35 35 H 1.09001 * 109.47321 * 184.99976 * 4 3 2 36 36 H 1.09007 * 109.47126 * 305.00120 * 4 3 2 37 37 H 1.08994 * 110.24588 * 316.00834 * 6 5 4 38 38 H 1.08998 * 110.24663 * 78.01466 * 6 5 4 39 39 H 0.97002 * 120.00191 * 0.02562 * 11 9 7 40 40 H 1.09007 * 109.46086 * 298.70312 * 14 12 11 41 41 H 1.08993 * 109.46260 * 58.66357 * 14 12 11 42 42 H 1.08996 * 109.47584 * 301.36514 * 15 14 12 43 43 H 1.08997 * 109.52520 * 181.29787 * 15 14 12 44 44 H 1.08994 * 109.58750 * 185.59555 * 16 15 14 45 45 H 1.08993 * 109.58919 * 65.16460 * 16 15 14 46 46 H 0.97002 * 120.00057 * 180.02562 * 21 20 18 47 47 H 1.08999 * 109.59120 * 186.60334 * 26 17 16 48 48 H 1.08999 * 109.58610 * 66.17873 * 26 17 16 49 49 H 1.09002 * 110.48638 * 265.90009 * 27 7 6 50 50 H 1.09004 * 110.59748 * 143.31836 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1435 -0.8806 -1.4467 7 6 5.0082 -1.0302 -2.7160 8 1 6.0647 -1.0995 -2.4574 9 6 4.5759 -2.2217 -3.5310 10 8 3.7284 -2.9753 -3.1011 11 7 5.1311 -2.4499 -4.7377 12 6 4.7113 -3.6087 -5.5299 13 1 4.4869 -4.4422 -4.8645 14 6 5.8366 -4.0078 -6.4872 15 6 5.4113 -5.2376 -7.2926 16 6 4.1689 -4.8965 -8.1214 17 7 3.1298 -4.3747 -7.2231 18 6 1.8769 -4.9272 -7.2100 19 1 1.7411 -5.9639 -7.4808 20 6 0.7815 -4.1549 -6.8488 21 7 0.8726 -2.8419 -6.8510 22 14 -0.8218 -4.9791 -6.3595 23 1 -0.8254 -5.2245 -4.8949 24 1 -1.9613 -4.0962 -6.7163 25 1 -0.9533 -6.2719 -7.0783 26 6 3.4608 -3.2491 -6.3387 27 6 4.7067 0.2898 -3.4627 28 6 4.2832 1.2462 -2.3697 29 8 4.2294 2.4523 -2.4844 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.9784 2.1766 0.0889 36 1 3.8514 0.5683 0.8410 37 1 4.6521 -1.3198 -0.5886 38 1 3.1742 -1.3562 -1.5958 39 1 5.8092 -1.8474 -5.0815 40 1 6.0440 -3.1823 -7.1682 41 1 6.7346 -4.2405 -5.9151 42 1 5.1805 -6.0563 -6.6110 43 1 6.2217 -5.5356 -7.9578 44 1 3.8038 -5.7948 -8.6193 45 1 4.4218 -4.1411 -8.8652 46 1 0.1073 -2.3022 -6.5982 47 1 2.6287 -3.0604 -5.6604 48 1 3.6561 -2.3593 -6.9371 49 1 3.8977 0.1467 -4.1790 50 1 5.6004 0.6581 -3.9666 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007447524.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:05 Heat of formation + Delta-G solvation = -118.810447 kcal Electronic energy + Delta-G solvation = -31067.356303 eV Core-core repulsion = 26901.127604 eV Total energy + Delta-G solvation = -4166.228699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91166 -40.56153 -38.96955 -38.84027 -37.27399 -35.79410 -34.62477 -34.19433 -31.90581 -30.92641 -29.83550 -28.71992 -27.31883 -27.22378 -25.04749 -23.96089 -23.86186 -22.95600 -21.27399 -20.77181 -20.42429 -18.80490 -18.56351 -18.03827 -17.47411 -17.20433 -17.02029 -16.69927 -16.53194 -16.14311 -15.92797 -15.79652 -15.61259 -15.27405 -14.85001 -14.77187 -14.69682 -14.27163 -14.12045 -14.02959 -13.87108 -13.50265 -13.32132 -13.11723 -12.98466 -12.93725 -12.70600 -12.54240 -12.43114 -12.38292 -12.22187 -12.12732 -12.04047 -11.66854 -11.56760 -11.23582 -11.15624 -10.75981 -10.65704 -10.56602 -10.04780 -9.78692 -8.68858 -7.89922 -5.35122 1.39262 1.43369 1.44354 1.50203 1.65168 1.85661 2.26124 2.48505 2.78671 3.19103 3.26824 3.35370 3.70376 3.86636 3.88165 3.99938 4.01634 4.11856 4.17969 4.19751 4.27617 4.33040 4.39553 4.44658 4.47639 4.52052 4.53603 4.63201 4.68160 4.75112 4.76529 4.80864 4.85276 4.95436 5.02080 5.12315 5.23215 5.26955 5.37172 5.47009 5.50712 5.55216 5.62451 5.81594 5.96871 6.14501 6.35793 6.66494 7.03683 7.12028 7.37458 7.85990 8.33872 9.14212 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010265 B = 0.003712 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.001967 B = 7542.206717 C = 9399.203992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.038 3.962 4 C 0.125 3.875 5 N -0.607 5.607 6 C 0.123 3.877 7 C -0.104 4.104 8 H 0.164 0.836 9 C 0.518 3.482 10 O -0.579 6.579 11 N -0.703 5.703 12 C 0.131 3.869 13 H 0.052 0.948 14 C -0.106 4.106 15 C -0.122 4.122 16 C 0.134 3.866 17 N -0.611 5.611 18 C -0.263 4.263 19 H 0.068 0.932 20 C -0.048 4.048 21 N -0.930 5.930 22 Si 0.957 3.043 23 H -0.294 1.294 24 H -0.293 1.293 25 H -0.261 1.261 26 C 0.178 3.822 27 C -0.141 4.141 28 C 0.515 3.485 29 O -0.572 6.572 30 H 0.064 0.936 31 H 0.031 0.969 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.029 0.971 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.059 0.941 39 H 0.416 0.584 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.245 0.755 47 H 0.042 0.958 48 H -0.001 1.001 49 H 0.089 0.911 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.513 6.217 12.941 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.327 6.327 3 C -0.039 4.039 4 C 0.004 3.996 5 N -0.339 5.339 6 C 0.000 4.000 7 C -0.126 4.126 8 H 0.182 0.818 9 C 0.304 3.696 10 O -0.458 6.458 11 N -0.355 5.355 12 C 0.025 3.975 13 H 0.071 0.929 14 C -0.144 4.144 15 C -0.161 4.161 16 C 0.009 3.991 17 N -0.334 5.334 18 C -0.394 4.394 19 H 0.085 0.915 20 C -0.243 4.243 21 N -0.575 5.575 22 Si 0.786 3.214 23 H -0.221 1.221 24 H -0.219 1.219 25 H -0.185 1.185 26 C 0.051 3.949 27 C -0.181 4.181 28 C 0.304 3.696 29 O -0.453 6.453 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.047 0.953 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.077 0.923 39 H 0.253 0.747 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.115 0.885 44 H 0.071 0.929 45 H 0.039 0.961 46 H 0.054 0.946 47 H 0.061 0.939 48 H 0.017 0.983 49 H 0.107 0.893 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.841 6.245 13.265 19.490 hybrid contribution -1.763 0.262 -0.162 1.789 sum 11.078 6.507 13.103 18.351 Atomic orbital electron populations 1.22828 0.80163 1.03243 1.00496 1.87883 1.20839 1.28443 1.95514 1.23138 0.94876 0.84876 1.01013 1.21681 0.91734 1.00632 0.85572 1.48322 1.65301 1.07856 1.12460 1.21911 1.00405 0.79802 0.97864 1.22193 1.04533 0.91185 0.94654 0.81843 1.20677 0.80706 0.86299 0.81925 1.90765 1.33372 1.49918 1.71786 1.45830 1.42673 1.29158 1.17817 1.21484 0.96023 0.87685 0.92333 0.92940 1.21638 0.96507 0.98817 0.97456 1.21898 0.97882 0.97267 0.99094 1.21189 0.89227 0.96822 0.91818 1.44265 1.08726 1.38256 1.42200 1.19510 0.84489 0.93589 1.41782 0.91460 1.25724 1.00652 0.95627 1.02343 1.70168 1.30675 1.04418 1.52288 0.85406 0.79755 0.78385 0.77868 1.22134 1.21935 1.18543 1.20808 0.94557 0.88140 0.91378 1.22355 1.05749 0.92835 0.97138 1.21103 0.75937 0.87802 0.84727 1.90691 1.56468 1.15125 1.82975 0.91718 0.95021 0.89621 0.89418 0.95256 0.87364 0.86817 0.87140 0.92264 0.74727 0.90718 0.89224 0.93039 0.88541 0.92862 0.96112 0.94551 0.93920 0.98310 0.89285 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.88 16 2 O -0.41 -10.54 10.55 -148.98 -1.57 -12.11 16 3 C 0.04 0.80 6.28 71.98 0.45 1.25 16 4 C 0.13 2.27 6.32 86.38 0.55 2.82 16 5 N -0.61 -13.94 2.88 -818.33 -2.36 -16.30 16 6 C 0.12 2.84 6.57 86.77 0.57 3.41 16 7 C -0.10 -2.12 3.53 -10.54 -0.04 -2.15 16 8 H 0.16 1.80 8.14 -2.39 -0.02 1.78 16 9 C 0.52 15.92 7.04 87.66 0.62 16.53 16 10 O -0.58 -24.75 15.24 -3.05 -0.05 -24.80 16 11 N -0.70 -19.72 5.03 -442.15 -2.22 -21.94 16 12 C 0.13 4.78 2.60 45.07 0.12 4.90 16 13 H 0.05 2.26 7.58 -2.39 -0.02 2.24 16 14 C -0.11 -2.88 5.36 30.62 0.16 -2.71 16 15 C -0.12 -3.63 6.08 30.67 0.19 -3.44 16 16 C 0.13 5.35 6.52 86.36 0.56 5.91 16 17 N -0.61 -31.19 2.99 -699.09 -2.09 -33.29 16 18 C -0.26 -15.08 9.59 84.03 0.81 -14.28 16 19 H 0.07 3.74 7.89 -2.91 -0.02 3.72 16 20 C -0.05 -2.81 4.91 84.86 0.42 -2.40 16 21 N -0.93 -57.85 11.19 21.65 0.24 -57.61 16 22 Si 0.96 47.72 29.59 68.60 2.03 49.75 16 23 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 24 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 25 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 26 C 0.18 8.72 4.89 86.37 0.42 9.15 16 27 C -0.14 -3.07 6.37 30.59 0.19 -2.88 16 28 C 0.52 13.75 8.02 87.90 0.71 14.45 16 29 O -0.57 -19.08 17.59 -3.04 -0.05 -19.14 16 30 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.11 1.76 7.93 -2.39 -0.02 1.74 16 36 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 1.91 7.05 -2.39 -0.02 1.89 16 39 H 0.42 7.94 8.60 -92.71 -0.80 7.15 16 40 H 0.07 1.85 8.14 -2.38 -0.02 1.84 16 41 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.10 2.15 8.14 -2.39 -0.02 2.14 16 44 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 45 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 47 H 0.04 2.54 6.03 -2.39 -0.01 2.52 16 48 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 49 H 0.09 2.47 7.89 -2.39 -0.02 2.45 16 50 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -84.40 402.80 1.03 -83.37 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.13 Total: 19.62 kcal Atomic # 6 Polarization: 25.47 SS G_CDS: 6.97 Total: 32.44 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -6.43 Total: -129.14 kcal Atomic # 8 Polarization: -54.37 SS G_CDS: -1.67 Total: -56.04 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Total: -84.40 1.03 -83.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007447524.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.439 kcal (2) G-P(sol) polarization free energy of solvation -84.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds