Wall clock time and date at job start Sat Apr 11 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42895 * 113.99915 * 2 1 4 4 C 1.52999 * 109.47126 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47340 * 64.99897 * 4 3 2 6 6 C 1.46758 * 124.34891 * 269.72731 * 5 4 3 7 7 C 1.54301 * 105.56235 * 196.88432 * 6 5 4 8 8 H 1.09004 * 110.74547 * 93.00070 * 7 6 5 9 9 C 1.50698 * 111.14904 * 216.69249 * 7 6 5 10 10 O 1.21284 * 120.00419 * 354.03742 * 9 7 6 11 11 N 1.34782 * 119.99919 * 174.03201 * 9 7 6 12 12 C 1.46505 * 119.99887 * 180.02562 * 11 9 7 13 13 H 1.08994 * 109.49747 * 35.00115 * 12 11 9 14 14 C 1.53042 * 109.49357 * 155.06684 * 12 11 9 15 15 C 1.53040 * 109.53350 * 181.28444 * 14 12 11 16 16 C 1.53192 * 109.34117 * 298.67851 * 15 14 12 17 17 N 1.46930 * 108.77159 * 54.62552 * 16 15 14 18 18 C 1.36934 * 120.63228 * 126.41424 * 17 16 15 19 19 H 1.08004 * 120.00026 * 332.58366 * 18 17 16 20 20 C 1.38806 * 120.00357 * 152.58926 * 18 17 16 21 21 N 1.31623 * 120.00425 * 159.36223 * 20 18 17 22 22 Si 1.86800 * 119.99685 * 339.36253 * 20 18 17 23 23 H 1.48503 * 109.47410 * 92.92214 * 22 20 18 24 24 H 1.48500 * 109.46975 * 212.91818 * 22 20 18 25 25 H 1.48501 * 109.47230 * 332.91843 * 22 20 18 26 26 C 1.46924 * 118.73613 * 306.39048 * 17 16 15 27 27 C 1.54621 * 101.84430 * 334.93640 * 7 6 5 28 28 C 1.34419 * 124.34620 * 90.02579 * 5 4 3 29 29 O 1.21277 * 124.94516 * 359.61185 * 28 5 4 30 30 H 1.08997 * 109.46844 * 299.99570 * 1 2 3 31 31 H 1.08992 * 109.47174 * 60.00244 * 1 2 3 32 32 H 1.09002 * 109.46973 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47094 * 59.99830 * 3 2 1 34 34 H 1.09001 * 109.47223 * 300.00498 * 3 2 1 35 35 H 1.09004 * 109.46978 * 185.00438 * 4 3 2 36 36 H 1.09004 * 109.46625 * 304.99954 * 4 3 2 37 37 H 1.09002 * 110.24671 * 316.01728 * 6 5 4 38 38 H 1.09007 * 110.24767 * 78.01576 * 6 5 4 39 39 H 0.96994 * 120.00069 * 0.02562 * 11 9 7 40 40 H 1.08998 * 109.45907 * 301.33460 * 14 12 11 41 41 H 1.08999 * 109.46052 * 61.29857 * 14 12 11 42 42 H 1.09004 * 109.49436 * 178.71669 * 15 14 12 43 43 H 1.08996 * 109.47206 * 58.63538 * 15 14 12 44 44 H 1.08990 * 109.59057 * 294.83720 * 16 15 14 45 45 H 1.08999 * 109.70157 * 174.47663 * 16 15 14 46 46 H 0.96997 * 120.00117 * 180.02562 * 21 20 18 47 47 H 1.08999 * 109.58831 * 293.81985 * 26 17 16 48 48 H 1.09004 * 109.58616 * 173.40373 * 26 17 16 49 49 H 1.09005 * 110.49053 * 265.90070 * 27 7 6 50 50 H 1.09007 * 110.60211 * 143.31480 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 4.1436 -0.8806 -1.4468 7 6 5.0083 -1.0302 -2.7160 8 1 6.0649 -1.0996 -2.4573 9 6 4.5760 -2.2217 -3.5310 10 8 3.7285 -2.9753 -3.1012 11 7 5.1313 -2.4500 -4.7378 12 6 4.7107 -3.6081 -5.5304 13 1 3.6471 -3.7885 -5.3747 14 6 4.9705 -3.3335 -7.0134 15 6 4.5020 -4.5297 -7.8450 16 6 5.2967 -5.7741 -7.4366 17 7 5.1687 -5.9614 -5.9849 18 6 4.7422 -7.1566 -5.4705 19 1 4.0972 -7.7964 -6.0544 20 6 5.1387 -7.5458 -4.1984 21 7 4.4449 -8.4506 -3.5408 22 14 6.6570 -6.7855 -3.4199 23 1 6.2585 -5.6135 -2.5995 24 1 7.3258 -7.7905 -2.5551 25 1 7.5936 -6.3480 -4.4860 26 6 5.5076 -4.8419 -5.0957 27 6 4.7069 0.2898 -3.4627 28 6 4.2834 1.2461 -2.3696 29 8 4.2295 2.4523 -2.4843 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8899 34 1 1.6886 1.8464 -0.8899 35 1 3.9785 2.1765 0.0890 36 1 3.8514 0.5682 0.8410 37 1 4.6521 -1.3199 -0.5885 38 1 3.1742 -1.3563 -1.5959 39 1 5.8093 -1.8475 -5.0814 40 1 4.4234 -2.4417 -7.3189 41 1 6.0375 -3.1770 -7.1722 42 1 4.6664 -4.3242 -8.9028 43 1 3.4403 -4.7018 -7.6681 44 1 6.3465 -5.6388 -7.6964 45 1 4.9018 -6.6485 -7.9539 46 1 4.7218 -8.7223 -2.6518 47 1 6.5747 -4.6306 -5.1646 48 1 5.2499 -5.1002 -4.0685 49 1 3.8978 0.1468 -4.1791 50 1 5.6006 0.6582 -3.9665 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007447526.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:08 Heat of formation + Delta-G solvation = -86.304954 kcal Electronic energy + Delta-G solvation = -30894.624118 eV Core-core repulsion = 26729.804963 eV Total energy + Delta-G solvation = -4164.819155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.99683 -39.48374 -38.07155 -37.69609 -36.29539 -34.37946 -33.62122 -32.68427 -30.71461 -29.97519 -28.83628 -27.85476 -26.55551 -25.30389 -24.12965 -23.15475 -22.54122 -21.57464 -20.20238 -19.66833 -19.38596 -17.68778 -17.20833 -16.83775 -16.68419 -16.23827 -15.92130 -15.70036 -15.42739 -15.20235 -14.89693 -14.62704 -14.16657 -13.93332 -13.83677 -13.70694 -13.41584 -13.33559 -12.94448 -12.80360 -12.64331 -12.42838 -12.34429 -12.22451 -12.18577 -11.72832 -11.61002 -11.51910 -11.38988 -11.11007 -10.76504 -10.62825 -10.27030 -10.26009 -10.14245 -9.93964 -9.77879 -9.60586 -9.44215 -8.95814 -8.88497 -8.51109 -6.96833 -5.92308 -3.28806 2.33329 2.65346 2.74114 3.23696 3.36977 3.48172 3.50467 3.51206 4.06047 4.14079 4.56037 4.59186 4.65271 4.70563 4.82968 4.93709 4.97039 5.05608 5.10951 5.13140 5.17140 5.18959 5.24527 5.29531 5.34534 5.44098 5.47218 5.48607 5.49004 5.56212 5.80069 5.89629 5.93753 6.01306 6.18772 6.24902 6.25452 6.41993 6.52491 6.61512 6.63010 6.77168 6.79056 6.91674 6.92111 7.64361 7.91593 7.97719 8.35467 8.37553 8.95232 9.74378 10.09966 11.23571 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.003154 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.244822 B = 8874.291145 C = 9742.050942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.041 3.959 4 C 0.129 3.871 5 N -0.610 5.610 6 C 0.121 3.879 7 C -0.126 4.126 8 H 0.117 0.883 9 C 0.519 3.481 10 O -0.518 6.518 11 N -0.722 5.722 12 C 0.125 3.875 13 H 0.092 0.908 14 C -0.116 4.116 15 C -0.132 4.132 16 C 0.145 3.855 17 N -0.601 5.601 18 C -0.264 4.264 19 H 0.087 0.913 20 C 0.029 3.971 21 N -0.904 5.904 22 Si 0.881 3.119 23 H -0.287 1.287 24 H -0.303 1.303 25 H -0.272 1.272 26 C 0.120 3.880 27 C -0.144 4.144 28 C 0.520 3.480 29 O -0.537 6.537 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.395 0.605 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.023 0.977 45 H 0.065 0.935 46 H 0.263 0.737 47 H 0.024 0.976 48 H 0.079 0.921 49 H 0.109 0.891 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 21.154 2.645 21.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.037 4.037 4 C 0.007 3.993 5 N -0.344 5.344 6 C -0.002 4.002 7 C -0.148 4.148 8 H 0.135 0.865 9 C 0.303 3.697 10 O -0.392 6.392 11 N -0.373 5.373 12 C 0.020 3.980 13 H 0.110 0.890 14 C -0.154 4.154 15 C -0.172 4.172 16 C 0.019 3.981 17 N -0.325 5.325 18 C -0.392 4.392 19 H 0.104 0.896 20 C -0.171 4.171 21 N -0.546 5.546 22 Si 0.711 3.289 23 H -0.214 1.214 24 H -0.232 1.232 25 H -0.197 1.197 26 C -0.006 4.006 27 C -0.184 4.184 28 C 0.308 3.692 29 O -0.415 6.415 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.229 0.771 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.041 0.959 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.041 0.959 48 H 0.097 0.903 49 H 0.128 0.872 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.094 20.934 3.115 21.192 hybrid contribution 0.979 0.836 0.474 1.372 sum -0.115 21.769 3.589 22.064 Atomic orbital electron populations 1.22746 0.80847 1.03111 0.99683 1.87940 1.19859 1.27101 1.95369 1.23024 0.94244 0.85591 1.00792 1.21442 0.92344 0.99690 0.85783 1.48220 1.66078 1.08023 1.12068 1.21980 1.01823 0.79882 0.96492 1.22251 1.02736 0.93601 0.96214 0.86511 1.19994 0.82068 0.85860 0.81807 1.90809 1.31531 1.47371 1.69535 1.46097 1.42917 1.29377 1.18925 1.21799 1.01465 0.85119 0.89650 0.88969 1.21679 1.01067 0.98528 0.94152 1.21997 1.01408 0.95896 0.97911 1.20986 0.96347 0.95645 0.85112 1.44285 1.78382 1.09548 1.00291 1.18889 1.24366 0.95351 1.00622 0.89586 1.25255 0.98224 0.96652 0.96960 1.69832 1.38358 1.34060 1.12399 0.86961 0.85481 0.77556 0.78875 1.21440 1.23151 1.19730 1.21688 0.95539 0.87082 0.96333 1.22329 1.04867 0.93286 0.97906 1.20783 0.76316 0.88037 0.84070 1.90717 1.54740 1.13591 1.82414 0.94213 0.94203 0.89288 0.92227 0.92905 0.88377 0.89154 0.89675 0.88205 0.77140 0.92415 0.92091 0.92142 0.91642 0.95927 0.91643 0.92739 0.95860 0.90290 0.87245 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.31 10.55 -35.23 -0.37 -4.68 16 3 C 0.04 0.38 6.28 37.16 0.23 0.61 16 4 C 0.13 1.15 6.32 -4.04 -0.03 1.12 16 5 N -0.61 -6.57 2.88 -172.52 -0.50 -7.07 16 6 C 0.12 1.38 6.57 -3.22 -0.02 1.36 16 7 C -0.13 -1.33 3.53 -90.24 -0.32 -1.65 16 8 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 9 C 0.52 7.70 7.04 -10.98 -0.08 7.62 16 10 O -0.52 -10.35 15.24 5.55 0.08 -10.27 16 11 N -0.72 -9.83 5.03 -53.69 -0.27 -10.10 16 12 C 0.13 2.16 2.60 -67.81 -0.18 1.98 16 13 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 14 C -0.12 -1.61 5.36 -26.69 -0.14 -1.75 16 15 C -0.13 -2.00 6.08 -26.61 -0.16 -2.17 16 16 C 0.14 2.74 6.52 -3.71 -0.02 2.71 16 17 N -0.60 -14.24 2.77 -172.33 -0.48 -14.71 16 18 C -0.26 -7.48 10.03 -15.06 -0.15 -7.63 16 19 H 0.09 2.58 8.06 -52.48 -0.42 2.15 16 20 C 0.03 0.84 5.23 -17.43 -0.09 0.75 16 21 N -0.90 -28.33 13.97 55.49 0.78 -27.56 16 22 Si 0.88 22.90 24.34 -169.99 -4.14 18.76 16 23 H -0.29 -7.39 6.62 56.52 0.37 -7.01 16 24 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 25 H -0.27 -6.84 6.64 56.52 0.38 -6.46 16 26 C 0.12 2.63 3.78 -3.71 -0.01 2.61 16 27 C -0.14 -1.34 6.37 -26.75 -0.17 -1.51 16 28 C 0.52 6.17 8.02 -10.86 -0.09 6.09 16 29 O -0.54 -8.00 17.59 5.56 0.10 -7.90 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.79 7.93 -51.93 -0.41 0.38 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 1.40 7.05 -51.92 -0.37 1.04 16 39 H 0.40 3.85 8.60 -40.82 -0.35 3.50 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 1.24 7.93 -51.93 -0.41 0.82 16 46 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 47 H 0.02 0.50 7.07 -51.93 -0.37 0.13 16 48 H 0.08 2.02 4.50 -51.93 -0.23 1.78 16 49 H 0.11 1.04 7.89 -51.93 -0.41 0.63 16 50 H 0.11 0.77 8.14 -51.92 -0.42 0.35 16 LS Contribution 396.39 15.07 5.97 5.97 Total: -1.00 -36.84 396.39 -7.41 -44.25 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.48 Total: 1.76 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: -0.12 Total: 11.55 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.47 Total: -59.44 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.19 Total: -22.85 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.14 Total: 18.76 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.84 -7.41 -44.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007447526.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.055 kcal (2) G-P(sol) polarization free energy of solvation -36.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds