Wall clock time and date at job start Sat Apr 11 2020 05:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99724 * 2 1 4 4 C 1.50703 * 109.46698 * 180.02562 * 3 2 1 5 5 O 1.21276 * 120.00264 * 359.97438 * 4 3 2 6 6 N 1.34788 * 119.99649 * 180.02562 * 4 3 2 7 7 C 1.46921 * 120.62858 * 359.97438 * 6 4 3 8 8 C 1.53188 * 108.77630 * 233.58699 * 7 6 4 9 9 C 1.53046 * 109.31256 * 305.36667 * 8 7 6 10 10 C 1.53041 * 109.53535 * 61.36407 * 9 8 7 11 11 H 1.09007 * 109.49829 * 58.62262 * 10 9 8 12 12 C 1.50701 * 109.49848 * 178.67966 * 10 9 8 13 13 O 1.21281 * 119.99910 * 7.60115 * 12 10 9 14 14 N 1.34768 * 120.00243 * 187.59583 * 12 10 9 15 15 C 1.46970 * 120.59538 * 174.56299 * 14 12 10 16 16 C 1.53370 * 108.63460 * 235.20319 * 15 14 12 17 17 N 1.46961 * 108.63716 * 310.57643 * 16 15 14 18 18 C 1.36937 * 120.59554 * 235.24635 * 17 16 15 19 19 H 1.08001 * 119.99403 * 28.30261 * 18 17 16 20 20 C 1.38811 * 120.00012 * 208.31027 * 18 17 16 21 21 N 1.31612 * 120.00323 * 17.13105 * 20 18 17 22 22 Si 1.86802 * 119.99569 * 197.13134 * 20 18 17 23 23 H 1.48493 * 109.47537 * 59.99808 * 22 20 18 24 24 H 1.48507 * 109.46800 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47232 * 299.99378 * 22 20 18 26 26 C 1.46970 * 118.81131 * 55.22523 * 17 16 15 27 27 C 1.46968 * 120.59474 * 354.54437 * 14 12 10 28 28 C 1.46921 * 120.62613 * 179.97438 * 6 4 3 29 29 H 1.08998 * 109.47234 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46963 * 300.00006 * 1 2 3 31 31 H 1.09004 * 109.47435 * 59.99951 * 1 2 3 32 32 H 1.08992 * 109.47341 * 60.00100 * 3 2 1 33 33 H 1.08994 * 109.47274 * 299.99752 * 3 2 1 34 34 H 1.09002 * 109.58325 * 113.79882 * 7 6 4 35 35 H 1.08998 * 109.71018 * 353.44841 * 7 6 4 36 36 H 1.09003 * 109.50086 * 185.41760 * 8 7 6 37 37 H 1.08998 * 109.52250 * 65.33577 * 8 7 6 38 38 H 1.08994 * 109.46243 * 301.34816 * 9 8 7 39 39 H 1.09002 * 109.46135 * 181.38391 * 9 8 7 40 40 H 1.08995 * 109.60561 * 354.95104 * 15 14 12 41 41 H 1.09000 * 109.60735 * 115.46208 * 15 14 12 42 42 H 1.09003 * 109.60514 * 70.32035 * 16 15 14 43 43 H 1.09002 * 109.60843 * 190.82592 * 16 15 14 44 44 H 0.97000 * 120.00284 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.60441 * 185.02464 * 26 17 16 46 46 H 1.09001 * 109.60724 * 64.52264 * 26 17 16 47 47 H 1.09004 * 109.60498 * 244.53877 * 27 14 12 48 48 H 1.09002 * 109.60898 * 5.04338 * 27 14 12 49 49 H 1.08995 * 109.58967 * 6.63094 * 28 6 4 50 50 H 1.08999 * 109.58662 * 246.19872 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2764 2.2970 -0.0002 7 6 3.6591 3.6302 0.0003 8 6 4.2332 4.4398 -1.1666 9 6 5.7605 4.4543 -1.0697 10 6 6.2930 3.0228 -1.1667 11 1 5.9737 2.5789 -2.1098 12 6 7.7986 3.0408 -1.1037 13 8 8.3828 4.0740 -0.8546 14 7 8.4959 1.9088 -1.3241 15 6 9.9642 1.9342 -1.3838 16 6 10.4112 1.3223 -2.7172 17 7 9.7170 0.0402 -2.9017 18 6 10.4255 -1.1102 -3.1248 19 1 11.4276 -1.2113 -2.7350 20 6 9.8557 -2.1462 -3.8521 21 7 8.8003 -1.9191 -4.6049 22 14 10.5872 -3.8627 -3.7624 23 1 10.5468 -4.3453 -2.3586 24 1 9.8013 -4.7813 -4.6250 25 1 11.9952 -3.8261 -4.2329 26 6 8.2487 0.0147 -2.8421 27 6 7.8017 0.6266 -1.5087 28 6 5.7423 2.1970 -0.0003 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8899 34 1 3.8817 4.1355 0.9401 35 1 2.5796 3.5355 -0.1168 36 1 3.8562 5.4615 -1.1209 37 1 3.9328 3.9830 -2.1095 38 1 6.0598 4.8891 -0.1161 39 1 6.1706 5.0503 -1.8850 40 1 10.3151 2.9641 -1.3179 41 1 10.3739 1.3519 -0.5585 42 1 10.1553 1.9977 -3.5336 43 1 11.4883 1.1561 -2.7006 44 1 8.4020 -2.6432 -5.1128 45 1 7.8978 -1.0151 -2.9080 46 1 7.8389 0.5970 -3.6675 47 1 8.0576 -0.0488 -0.6923 48 1 6.7246 0.7928 -1.5253 49 1 6.0375 1.1546 -0.1192 50 1 6.1350 2.5853 0.9395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018357458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:11 Heat of formation + Delta-G solvation = -73.383718 kcal Electronic energy + Delta-G solvation = -31369.254029 eV Core-core repulsion = 27204.995181 eV Total energy + Delta-G solvation = -4164.258848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.78630 -39.59943 -37.98488 -37.16382 -36.60737 -33.92717 -33.22209 -32.07609 -30.97120 -30.06343 -29.17543 -27.02563 -26.45983 -25.26118 -24.32849 -23.22482 -22.87140 -21.59459 -20.19736 -19.32080 -18.61801 -17.66470 -17.19798 -16.78713 -16.57448 -16.05260 -15.87825 -15.44854 -15.42317 -14.77395 -14.75494 -14.59540 -14.24807 -13.85321 -13.70147 -13.44473 -13.37741 -13.33188 -13.20320 -13.05738 -12.79758 -12.46788 -12.26340 -11.79193 -11.62126 -11.53602 -11.36411 -11.20881 -11.04200 -10.83410 -10.76171 -10.69786 -10.46124 -10.20787 -10.12469 -9.97981 -9.90614 -9.81981 -9.37208 -8.85856 -8.56692 -8.23801 -6.69176 -5.82521 -3.27365 2.37164 2.45394 2.94110 3.38500 3.40330 3.44726 3.46502 3.60608 4.25315 4.40511 4.47948 4.62648 4.63132 4.69401 4.78433 4.82088 4.88752 4.98008 5.03564 5.04046 5.18637 5.28960 5.35333 5.36042 5.39641 5.48808 5.58541 5.64646 5.71124 5.85745 5.89693 5.95625 6.01236 6.14449 6.17484 6.18751 6.22819 6.38987 6.45626 6.66820 6.78035 6.93190 7.13474 7.22703 7.50141 7.74401 7.90322 7.99800 8.38797 8.51075 9.14590 9.77346 10.34041 11.25201 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010344 B = 0.003590 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.167581 B = 7796.795884 C =10023.588110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.046 3.954 4 C 0.513 3.487 5 O -0.508 6.508 6 N -0.612 5.612 7 C 0.104 3.896 8 C -0.136 4.136 9 C -0.098 4.098 10 C -0.121 4.121 11 H 0.101 0.899 12 C 0.517 3.483 13 O -0.557 6.557 14 N -0.593 5.593 15 C 0.095 3.905 16 C 0.132 3.868 17 N -0.591 5.591 18 C -0.258 4.258 19 H 0.067 0.933 20 C 0.005 3.995 21 N -0.902 5.902 22 Si 0.905 3.095 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.159 3.841 27 C 0.072 3.928 28 C 0.115 3.885 29 H 0.092 0.908 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.022 0.978 43 H 0.067 0.933 44 H 0.256 0.744 45 H 0.101 0.899 46 H 0.022 0.978 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.111 0.889 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.863 12.643 9.758 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.034 4.034 4 C 0.300 3.700 5 O -0.381 6.381 6 N -0.348 5.348 7 C -0.019 4.019 8 C -0.174 4.174 9 C -0.136 4.136 10 C -0.144 4.144 11 H 0.119 0.881 12 C 0.304 3.696 13 O -0.437 6.437 14 N -0.324 5.324 15 C -0.029 4.029 16 C 0.005 3.995 17 N -0.314 5.314 18 C -0.387 4.387 19 H 0.085 0.915 20 C -0.194 4.194 21 N -0.545 5.545 22 Si 0.734 3.266 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.032 3.968 27 C -0.052 4.052 28 C -0.007 4.007 29 H 0.110 0.890 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.119 0.881 46 H 0.040 0.960 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.129 0.871 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.239 12.227 9.761 22.550 hybrid contribution 0.033 -0.631 -0.158 0.652 sum -16.206 11.596 9.603 22.121 Atomic orbital electron populations 1.22843 0.80358 1.03446 1.00000 1.88053 1.19768 1.25074 1.95366 1.22266 0.91716 0.87061 1.02357 1.20257 0.88689 0.84187 0.76868 1.90786 1.74230 1.25916 1.47189 1.48022 1.06544 1.05831 1.74404 1.21827 0.97596 0.82865 0.99571 1.21967 0.96317 1.00501 0.98659 1.21313 0.93889 0.94498 1.03857 1.21663 0.92906 0.98594 1.01199 0.88128 1.20261 0.88994 0.83391 0.76952 1.90631 1.71364 1.31563 1.50105 1.48109 1.07582 1.07937 1.68815 1.22232 0.79027 1.01433 1.00200 1.21297 0.96717 0.88570 0.92930 1.43978 1.01321 1.02641 1.83412 1.19152 0.99671 0.92075 1.27832 0.91526 1.25066 0.98636 0.99525 0.96176 1.69991 1.24331 1.31447 1.28773 0.86339 0.78440 0.84182 0.77615 1.20883 1.21565 1.20869 1.21171 0.84165 1.01498 0.89961 1.22908 0.95959 0.83923 1.02364 1.21808 0.78586 1.02890 0.97397 0.88992 0.93900 0.93769 0.90339 0.90178 0.90784 0.89875 0.90089 0.91121 0.90810 0.90745 0.90052 0.91890 0.95971 0.91498 0.93397 0.88068 0.95988 0.91474 0.90313 0.87120 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.36 -4.30 10.24 -55.14 -0.56 -4.86 16 3 C 0.05 0.42 4.77 36.01 0.17 0.59 16 4 C 0.51 6.62 7.78 -10.98 -0.09 6.54 16 5 O -0.51 -9.14 15.91 -14.35 -0.23 -9.36 16 6 N -0.61 -6.62 2.97 -172.80 -0.51 -7.13 16 7 C 0.10 0.71 6.34 -3.72 -0.02 0.69 16 8 C -0.14 -1.00 6.08 -26.61 -0.16 -1.17 16 9 C -0.10 -1.05 4.47 -26.69 -0.12 -1.17 16 10 C -0.12 -1.63 1.83 -91.67 -0.17 -1.79 16 11 H 0.10 1.41 7.58 -51.93 -0.39 1.02 16 12 C 0.52 8.83 7.02 -10.99 -0.08 8.75 16 13 O -0.56 -10.72 15.43 5.56 0.09 -10.64 16 14 N -0.59 -10.90 2.95 -172.49 -0.51 -11.40 16 15 C 0.10 1.78 6.58 -3.59 -0.02 1.75 16 16 C 0.13 2.80 6.67 -3.60 -0.02 2.78 16 17 N -0.59 -14.71 2.97 -172.04 -0.51 -15.22 16 18 C -0.26 -7.00 9.58 -15.06 -0.14 -7.15 16 19 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 20 C 0.00 0.14 4.91 -17.43 -0.09 0.05 16 21 N -0.90 -25.96 11.18 55.49 0.62 -25.34 16 22 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.16 3.74 5.51 -3.60 -0.02 3.72 16 27 C 0.07 1.38 5.48 -3.60 -0.02 1.36 16 28 C 0.12 1.49 5.27 -3.73 -0.02 1.47 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.48 7.94 -51.93 -0.41 0.07 16 33 H 0.08 0.53 7.69 -51.93 -0.40 0.13 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.35 5.95 -51.93 -0.31 0.04 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.47 7.02 -51.93 -0.36 1.10 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 44 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.10 2.67 5.99 -51.93 -0.31 2.36 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 48 H 0.08 1.37 4.26 -51.93 -0.22 1.15 16 49 H 0.11 1.69 4.22 -51.93 -0.22 1.47 16 50 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 386.40 15.07 5.82 5.82 Total: -1.00 -34.85 386.40 -8.60 -43.45 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -8.08 Total: 0.33 kcal Atomic # 6 Polarization: 17.42 SS G_CDS: 0.31 Total: 17.73 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.91 Total: -59.09 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.71 Total: -24.87 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.85 -8.60 -43.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018357458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.937 kcal (2) G-P(sol) polarization free energy of solvation -34.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds