Wall clock time and date at job start Sat Apr 11 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99724 * 2 1 4 4 C 1.50703 * 109.46698 * 180.02562 * 3 2 1 5 5 O 1.21276 * 120.00264 * 359.97438 * 4 3 2 6 6 N 1.34788 * 119.99649 * 180.02562 * 4 3 2 7 7 C 1.46921 * 120.62858 * 359.97438 * 6 4 3 8 8 C 1.53188 * 108.77630 * 233.58699 * 7 6 4 9 9 C 1.53046 * 109.31256 * 305.36667 * 8 7 6 10 10 C 1.53041 * 109.53535 * 61.36407 * 9 8 7 11 11 H 1.09007 * 109.49829 * 58.62262 * 10 9 8 12 12 C 1.50701 * 109.49848 * 178.67966 * 10 9 8 13 13 O 1.21281 * 119.99910 * 7.60115 * 12 10 9 14 14 N 1.34768 * 120.00243 * 187.59583 * 12 10 9 15 15 C 1.46970 * 120.59538 * 174.56299 * 14 12 10 16 16 C 1.53370 * 108.63460 * 235.20319 * 15 14 12 17 17 N 1.46961 * 108.63716 * 310.57643 * 16 15 14 18 18 C 1.36937 * 120.59554 * 235.24635 * 17 16 15 19 19 H 1.08001 * 119.99403 * 28.30261 * 18 17 16 20 20 C 1.38811 * 120.00012 * 208.31027 * 18 17 16 21 21 N 1.31612 * 120.00323 * 17.13105 * 20 18 17 22 22 Si 1.86802 * 119.99569 * 197.13134 * 20 18 17 23 23 H 1.48493 * 109.47537 * 59.99808 * 22 20 18 24 24 H 1.48507 * 109.46800 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47232 * 299.99378 * 22 20 18 26 26 C 1.46970 * 118.81131 * 55.22523 * 17 16 15 27 27 C 1.46968 * 120.59474 * 354.54437 * 14 12 10 28 28 C 1.46921 * 120.62613 * 179.97438 * 6 4 3 29 29 H 1.08998 * 109.47234 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46963 * 300.00006 * 1 2 3 31 31 H 1.09004 * 109.47435 * 59.99951 * 1 2 3 32 32 H 1.08992 * 109.47341 * 60.00100 * 3 2 1 33 33 H 1.08994 * 109.47274 * 299.99752 * 3 2 1 34 34 H 1.09002 * 109.58325 * 113.79882 * 7 6 4 35 35 H 1.08998 * 109.71018 * 353.44841 * 7 6 4 36 36 H 1.09003 * 109.50086 * 185.41760 * 8 7 6 37 37 H 1.08998 * 109.52250 * 65.33577 * 8 7 6 38 38 H 1.08994 * 109.46243 * 301.34816 * 9 8 7 39 39 H 1.09002 * 109.46135 * 181.38391 * 9 8 7 40 40 H 1.08995 * 109.60561 * 354.95104 * 15 14 12 41 41 H 1.09000 * 109.60735 * 115.46208 * 15 14 12 42 42 H 1.09003 * 109.60514 * 70.32035 * 16 15 14 43 43 H 1.09002 * 109.60843 * 190.82592 * 16 15 14 44 44 H 0.97000 * 120.00284 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.60441 * 185.02464 * 26 17 16 46 46 H 1.09001 * 109.60724 * 64.52264 * 26 17 16 47 47 H 1.09004 * 109.60498 * 244.53877 * 27 14 12 48 48 H 1.09002 * 109.60898 * 5.04338 * 27 14 12 49 49 H 1.08995 * 109.58967 * 6.63094 * 28 6 4 50 50 H 1.08999 * 109.58662 * 246.19872 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2764 2.2970 -0.0002 7 6 3.6591 3.6302 0.0003 8 6 4.2332 4.4398 -1.1666 9 6 5.7605 4.4543 -1.0697 10 6 6.2930 3.0228 -1.1667 11 1 5.9737 2.5789 -2.1098 12 6 7.7986 3.0408 -1.1037 13 8 8.3828 4.0740 -0.8546 14 7 8.4959 1.9088 -1.3241 15 6 9.9642 1.9342 -1.3838 16 6 10.4112 1.3223 -2.7172 17 7 9.7170 0.0402 -2.9017 18 6 10.4255 -1.1102 -3.1248 19 1 11.4276 -1.2113 -2.7350 20 6 9.8557 -2.1462 -3.8521 21 7 8.8003 -1.9191 -4.6049 22 14 10.5872 -3.8627 -3.7624 23 1 10.5468 -4.3453 -2.3586 24 1 9.8013 -4.7813 -4.6250 25 1 11.9952 -3.8261 -4.2329 26 6 8.2487 0.0147 -2.8421 27 6 7.8017 0.6266 -1.5087 28 6 5.7423 2.1970 -0.0003 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8899 34 1 3.8817 4.1355 0.9401 35 1 2.5796 3.5355 -0.1168 36 1 3.8562 5.4615 -1.1209 37 1 3.9328 3.9830 -2.1095 38 1 6.0598 4.8891 -0.1161 39 1 6.1706 5.0503 -1.8850 40 1 10.3151 2.9641 -1.3179 41 1 10.3739 1.3519 -0.5585 42 1 10.1553 1.9977 -3.5336 43 1 11.4883 1.1561 -2.7006 44 1 8.4020 -2.6432 -5.1128 45 1 7.8978 -1.0151 -2.9080 46 1 7.8389 0.5970 -3.6675 47 1 8.0576 -0.0488 -0.6923 48 1 6.7246 0.7928 -1.5253 49 1 6.0375 1.1546 -0.1192 50 1 6.1350 2.5853 0.9395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018357458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:10 Heat of formation + Delta-G solvation = -96.899046 kcal Electronic energy + Delta-G solvation = -31370.273730 eV Core-core repulsion = 27204.995181 eV Total energy + Delta-G solvation = -4165.278549 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.88963 -40.80948 -38.92538 -38.45343 -37.82388 -35.70110 -34.28264 -33.40958 -32.47657 -31.68185 -29.93270 -28.76663 -27.12045 -26.21702 -25.72563 -24.64573 -24.41963 -22.72840 -21.67310 -20.21862 -20.10659 -18.89676 -18.41428 -17.82085 -17.58131 -17.30345 -17.11244 -16.69204 -16.53954 -16.44196 -15.69574 -15.55503 -15.44523 -15.36943 -15.15224 -15.06979 -14.81833 -14.60659 -14.19401 -13.99219 -13.94420 -13.53203 -13.33224 -13.13905 -13.04168 -12.66246 -12.60798 -12.52078 -12.35813 -12.28681 -12.12082 -12.04597 -11.93563 -11.78396 -11.72863 -11.61228 -10.99169 -10.72995 -10.70105 -10.60790 -9.91264 -9.75062 -8.70276 -7.91610 -5.40286 1.37392 1.46364 1.49604 1.55064 1.55865 1.70048 2.00300 2.48991 2.96379 3.23563 3.38049 3.47868 3.53787 3.72155 3.74524 3.98303 4.04200 4.11484 4.16363 4.18437 4.20896 4.27130 4.32672 4.41616 4.51413 4.52323 4.58392 4.59283 4.61325 4.63072 4.72213 4.76581 4.80567 4.89449 4.90920 5.00849 5.04908 5.15627 5.18727 5.35889 5.40231 5.45287 5.55820 5.61013 6.06367 6.31908 6.34820 6.40741 7.05864 7.07284 7.09714 7.74868 8.28335 9.13638 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010344 B = 0.003590 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.167581 B = 7796.795884 C =10023.588110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.049 3.951 4 C 0.504 3.496 5 O -0.574 6.574 6 N -0.605 5.605 7 C 0.098 3.902 8 C -0.128 4.128 9 C -0.095 4.095 10 C -0.113 4.113 11 H 0.092 0.908 12 C 0.517 3.483 13 O -0.575 6.575 14 N -0.600 5.600 15 C 0.104 3.896 16 C 0.132 3.868 17 N -0.608 5.608 18 C -0.269 4.269 19 H 0.071 0.929 20 C -0.046 4.046 21 N -0.933 5.933 22 Si 0.969 3.031 23 H -0.278 1.278 24 H -0.294 1.294 25 H -0.274 1.274 26 C 0.167 3.833 27 C 0.096 3.904 28 C 0.120 3.880 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.012 0.988 43 H 0.076 0.924 44 H 0.252 0.748 45 H 0.070 0.930 46 H 0.000 1.000 47 H 0.063 0.937 48 H 0.096 0.904 49 H 0.082 0.918 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.721 14.582 11.114 26.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.030 4.030 4 C 0.293 3.707 5 O -0.452 6.452 6 N -0.340 5.340 7 C -0.023 4.023 8 C -0.166 4.166 9 C -0.133 4.133 10 C -0.136 4.136 11 H 0.110 0.890 12 C 0.306 3.694 13 O -0.455 6.455 14 N -0.332 5.332 15 C -0.020 4.020 16 C 0.006 3.994 17 N -0.331 5.331 18 C -0.399 4.399 19 H 0.089 0.911 20 C -0.242 4.242 21 N -0.578 5.578 22 Si 0.797 3.203 23 H -0.204 1.204 24 H -0.220 1.220 25 H -0.199 1.199 26 C 0.040 3.960 27 C -0.028 4.028 28 C -0.004 4.004 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.111 0.889 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.030 0.970 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.088 0.912 46 H 0.018 0.982 47 H 0.082 0.918 48 H 0.113 0.887 49 H 0.100 0.900 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.112 14.245 11.136 25.593 hybrid contribution 0.634 -1.125 -0.592 1.421 sum -17.478 13.120 10.544 24.265 Atomic orbital electron populations 1.23029 0.78176 1.04037 1.01814 1.87994 1.22266 1.26986 1.95797 1.22439 0.88364 0.86757 1.05442 1.21154 0.90619 0.83516 0.75447 1.90755 1.75627 1.28458 1.50403 1.48122 1.05426 1.07304 1.73154 1.22222 0.99429 0.80415 1.00231 1.21962 0.93314 1.02533 0.98825 1.21342 0.96601 0.91931 1.03419 1.21659 0.90056 1.00846 1.00991 0.88991 1.20891 0.90510 0.82374 0.75651 1.90615 1.72217 1.31940 1.50746 1.48161 1.07549 1.08101 1.69387 1.22067 0.79483 1.01753 0.98659 1.21385 0.97073 0.86975 0.93966 1.44228 1.01804 1.03493 1.83624 1.19499 1.00010 0.93052 1.27289 0.91107 1.25823 0.99276 1.02947 0.96141 1.70147 1.25775 1.32093 1.29819 0.85323 0.77854 0.79685 0.77465 1.20414 1.22014 1.19935 1.20941 0.83834 0.99615 0.91594 1.22526 0.96830 0.84066 0.99346 1.21560 0.80560 1.00986 0.97289 0.89240 0.91777 0.92117 0.86629 0.87098 0.88924 0.86193 0.86883 0.91374 0.90784 0.91817 0.89006 0.91278 0.97042 0.90591 0.93919 0.91191 0.98194 0.91837 0.88654 0.89952 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -9.13 10.24 -129.94 -1.33 -10.46 16 3 C 0.05 0.74 4.77 71.24 0.34 1.08 16 4 C 0.50 12.43 7.78 87.66 0.68 13.11 16 5 O -0.57 -21.32 15.91 16.02 0.25 -21.06 16 6 N -0.61 -11.89 2.97 -818.99 -2.43 -14.33 16 7 C 0.10 0.91 6.34 86.36 0.55 1.46 16 8 C -0.13 -1.40 6.08 30.67 0.19 -1.21 16 9 C -0.09 -1.85 4.47 30.62 0.14 -1.71 16 10 C -0.11 -2.96 1.83 -11.47 -0.02 -2.98 16 11 H 0.09 2.58 7.58 -2.38 -0.02 2.56 16 12 C 0.52 17.49 7.02 87.66 0.62 18.11 16 13 O -0.57 -21.67 15.43 -3.03 -0.05 -21.71 16 14 N -0.60 -22.24 2.95 -818.02 -2.41 -24.65 16 15 C 0.10 3.89 6.58 86.41 0.57 4.46 16 16 C 0.13 5.69 6.67 86.42 0.58 6.27 16 17 N -0.61 -31.10 2.97 -698.21 -2.07 -33.17 16 18 C -0.27 -14.85 9.58 84.03 0.80 -14.05 16 19 H 0.07 3.78 7.89 -2.91 -0.02 3.75 16 20 C -0.05 -2.59 4.91 84.86 0.42 -2.17 16 21 N -0.93 -55.59 11.18 21.65 0.24 -55.34 16 22 Si 0.97 45.29 29.59 68.60 2.03 47.32 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 26 C 0.17 8.22 5.51 86.41 0.48 8.70 16 27 C 0.10 3.80 5.48 86.41 0.47 4.27 16 28 C 0.12 3.00 5.27 86.35 0.45 3.46 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.12 0.86 7.94 -2.39 -0.02 0.84 16 33 H 0.11 0.97 7.69 -2.39 -0.02 0.95 16 34 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.12 0.31 5.95 -2.39 -0.01 0.29 16 36 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 1.46 8.05 -2.39 -0.02 1.44 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 3.25 7.02 -2.39 -0.02 3.23 16 41 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.08 3.08 7.93 -2.39 -0.02 3.06 16 44 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 45 H 0.07 3.90 5.99 -2.39 -0.01 3.88 16 46 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 47 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 48 H 0.10 3.45 4.26 -2.39 -0.01 3.44 16 49 H 0.08 2.58 4.22 -2.39 -0.01 2.57 16 50 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -79.96 386.40 2.67 -77.29 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.93 Total: 15.80 kcal Atomic # 6 Polarization: 32.82 SS G_CDS: 7.51 Total: 40.33 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -6.68 Total: -127.49 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -1.12 Total: -53.24 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -79.96 2.67 -77.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018357458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.609 kcal (2) G-P(sol) polarization free energy of solvation -79.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds