Wall clock time and date at job start Sat Apr 11 2020 05:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00000 * 2 1 4 4 C 1.52995 * 109.46924 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47447 * 64.99989 * 4 3 2 6 6 C 1.46764 * 124.35219 * 89.99623 * 5 4 3 7 7 C 1.54484 * 105.47433 * 162.96607 * 6 5 4 8 8 H 1.09001 * 110.96435 * 267.26194 * 7 6 5 9 9 C 1.50693 * 110.96828 * 143.53676 * 7 6 5 10 10 O 1.21276 * 120.00167 * 3.08452 * 9 7 6 11 11 N 1.34783 * 119.99815 * 183.09302 * 9 7 6 12 12 C 1.46499 * 119.99796 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.46720 * 179.97438 * 12 11 9 14 14 H 1.09002 * 110.88605 * 54.29804 * 13 12 11 15 15 C 1.55158 * 111.00209 * 178.17613 * 13 12 11 16 16 C 1.54330 * 102.94056 * 153.61337 * 15 13 12 17 17 N 1.47022 * 107.27093 * 337.81035 * 16 15 13 18 18 C 1.36938 * 125.64698 * 178.97778 * 17 16 15 19 19 H 1.07999 * 120.00108 * 179.97438 * 18 17 16 20 20 C 1.38816 * 119.99955 * 359.97229 * 18 17 16 21 21 N 1.31614 * 120.00062 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99717 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47152 * 90.00368 * 22 20 18 24 24 H 1.48497 * 109.47025 * 209.99986 * 22 20 18 25 25 H 1.48493 * 109.47438 * 330.00303 * 22 20 18 26 26 C 1.47523 * 108.71559 * 358.93837 * 17 16 15 27 27 C 1.54624 * 101.79767 * 25.39556 * 7 6 5 28 28 C 1.34422 * 124.34828 * 269.97833 * 5 4 3 29 29 O 1.21280 * 124.94069 * 0.39045 * 28 5 4 30 30 H 1.08999 * 109.47049 * 300.00425 * 1 2 3 31 31 H 1.09000 * 109.47223 * 60.00123 * 1 2 3 32 32 H 1.09000 * 109.47139 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47398 * 59.99843 * 3 2 1 34 34 H 1.09000 * 109.46763 * 299.99808 * 3 2 1 35 35 H 1.09002 * 109.47219 * 304.99662 * 4 3 2 36 36 H 1.09006 * 109.47148 * 184.99481 * 4 3 2 37 37 H 1.08999 * 110.24429 * 43.96640 * 6 5 4 38 38 H 1.08998 * 110.24839 * 281.96656 * 6 5 4 39 39 H 0.97004 * 119.99768 * 359.97438 * 11 9 7 40 40 H 1.08999 * 109.47264 * 59.99685 * 12 11 9 41 41 H 1.08995 * 109.46921 * 299.99386 * 12 11 9 42 42 H 1.08996 * 110.72495 * 271.98095 * 15 13 12 43 43 H 1.09005 * 110.72041 * 35.25394 * 15 13 12 44 44 H 1.08998 * 109.87833 * 97.22798 * 16 15 13 45 45 H 1.08997 * 109.88366 * 218.39206 * 16 15 13 46 46 H 0.97002 * 120.00021 * 180.02562 * 21 20 18 47 47 H 1.09001 * 110.37251 * 265.30968 * 26 17 16 48 48 H 1.09004 * 110.41044 * 142.95250 * 26 17 16 49 49 H 1.09001 * 110.48500 * 93.90055 * 27 7 6 50 50 H 1.09002 * 110.48691 * 216.54213 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.3110 1.3085 -2.4724 7 6 5.1159 0.3229 -3.3484 8 1 6.1862 0.4284 -3.1714 9 6 4.7923 0.5109 -4.8082 10 8 4.0324 1.3911 -5.1524 11 7 5.3474 -0.2994 -5.7312 12 6 5.0333 -0.1163 -7.1504 13 6 5.7890 -1.1576 -7.9783 14 1 5.5823 -2.1653 -7.6178 15 6 5.4462 -1.0250 -9.4857 16 6 6.7035 -1.5927 -10.1774 17 7 7.8126 -1.4927 -9.2174 18 6 9.0985 -1.9086 -9.4375 19 1 9.8440 -1.7902 -8.6651 20 6 9.4439 -2.4825 -10.6534 21 7 8.5356 -2.6264 -11.5949 22 14 11.1983 -3.0492 -10.9538 23 1 11.3411 -4.4646 -10.5278 24 1 11.5152 -2.9332 -12.3999 25 1 12.1334 -2.2005 -10.1725 26 6 7.3110 -0.8692 -7.9781 27 6 4.6028 -1.0440 -2.8394 28 6 4.1247 -0.7595 -1.4319 29 8 3.9088 -1.6034 -0.5880 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8514 0.5682 0.8410 36 1 3.9785 2.1765 0.0888 37 1 4.9195 2.1791 -2.2278 38 1 3.4017 1.6160 -2.9888 39 1 5.9554 -1.0033 -5.4558 40 1 5.3338 0.8837 -7.4629 41 1 3.9611 -0.2381 -7.3038 42 1 4.5672 -1.6193 -9.7351 43 1 5.2958 0.0201 -9.7565 44 1 6.5392 -2.6360 -10.4467 45 1 6.9315 -1.0090 -11.0693 46 1 8.7768 -3.0277 -12.4444 47 1 7.4935 0.2054 -7.9932 48 1 7.7829 -1.3228 -7.1064 49 1 3.7778 -1.3964 -3.4584 50 1 5.4115 -1.7748 -2.8279 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028578798.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:26 Heat of formation + Delta-G solvation = -114.139784 kcal Electronic energy + Delta-G solvation = -29582.185925 eV Core-core repulsion = 25416.159762 eV Total energy + Delta-G solvation = -4166.026164 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.82556 -40.41000 -39.21262 -38.74992 -37.24948 -36.00153 -34.53667 -34.07658 -31.64284 -30.46860 -29.65769 -28.68553 -27.37537 -27.14569 -25.60599 -24.21066 -23.41507 -22.01309 -21.42087 -20.86486 -20.37321 -18.91449 -18.47004 -17.91102 -17.57671 -17.20423 -16.93517 -16.68919 -16.58997 -16.28450 -16.10823 -15.76364 -15.64133 -15.41368 -14.87213 -14.59140 -14.44681 -14.21574 -13.96986 -13.87717 -13.73468 -13.61307 -13.38322 -12.99358 -12.95269 -12.76852 -12.73233 -12.60477 -12.43138 -12.34129 -12.10898 -12.00988 -11.85132 -11.81247 -11.50234 -11.42392 -11.09610 -10.71616 -10.68243 -10.60770 -10.03632 -9.70073 -8.86696 -7.82921 -5.17879 1.47448 1.48953 1.57253 1.57482 1.62686 1.91465 2.26618 2.51339 2.89411 3.23981 3.35608 3.38955 3.65349 3.75699 3.89241 3.94834 4.06897 4.07974 4.09021 4.15103 4.24267 4.37547 4.45873 4.46664 4.49425 4.52868 4.58162 4.65929 4.67032 4.76420 4.78697 4.80945 4.87152 4.88473 4.97286 4.98436 5.10492 5.12366 5.40260 5.48763 5.52496 5.56494 5.70888 5.81112 6.10758 6.22784 6.26237 6.56890 7.12923 7.18994 7.24165 7.81371 8.45338 9.27564 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023056 B = 0.001906 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.156879 B =14689.599775 C =15145.876404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.413 6.413 3 C 0.035 3.965 4 C 0.123 3.877 5 N -0.614 5.614 6 C 0.119 3.881 7 C -0.112 4.112 8 H 0.149 0.851 9 C 0.528 3.472 10 O -0.574 6.574 11 N -0.713 5.713 12 C 0.145 3.855 13 C -0.096 4.096 14 H 0.089 0.911 15 C -0.123 4.123 16 C 0.182 3.818 17 N -0.630 5.630 18 C -0.238 4.238 19 H 0.085 0.915 20 C -0.071 4.071 21 N -0.953 5.953 22 Si 0.977 3.023 23 H -0.286 1.286 24 H -0.298 1.298 25 H -0.268 1.268 26 C 0.137 3.863 27 C -0.140 4.140 28 C 0.515 3.485 29 O -0.566 6.566 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.133 0.867 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.415 0.585 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.010 0.990 45 H 0.002 0.998 46 H 0.245 0.755 47 H 0.021 0.979 48 H 0.052 0.948 49 H 0.104 0.896 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.866 10.442 23.518 28.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C -0.042 4.042 4 C 0.002 3.998 5 N -0.348 5.348 6 C -0.004 4.004 7 C -0.133 4.133 8 H 0.167 0.833 9 C 0.314 3.686 10 O -0.454 6.454 11 N -0.364 5.364 12 C 0.020 3.980 13 C -0.115 4.115 14 H 0.107 0.893 15 C -0.162 4.162 16 C 0.057 3.943 17 N -0.356 5.356 18 C -0.368 4.368 19 H 0.103 0.897 20 C -0.264 4.264 21 N -0.602 5.602 22 Si 0.806 3.194 23 H -0.213 1.213 24 H -0.224 1.224 25 H -0.193 1.193 26 C 0.013 3.987 27 C -0.180 4.180 28 C 0.303 3.697 29 O -0.444 6.444 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.151 0.849 37 H 0.130 0.870 38 H 0.093 0.907 39 H 0.251 0.749 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.029 0.971 45 H 0.020 0.980 46 H 0.054 0.946 47 H 0.039 0.961 48 H 0.070 0.930 49 H 0.123 0.877 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.301 10.429 23.621 29.046 hybrid contribution 0.873 -0.624 -0.798 1.338 sum -12.428 9.805 22.823 27.776 Atomic orbital electron populations 1.22828 0.80189 1.03055 1.00693 1.88018 1.20839 1.28852 1.95541 1.23187 0.94445 0.84823 1.01750 1.21666 0.92419 1.00667 0.85074 1.48323 1.66329 1.06875 1.13253 1.22037 1.00331 0.94661 0.83335 1.22217 1.04565 0.96030 0.90489 0.83295 1.20395 0.79461 0.80716 0.87988 1.90708 1.37485 1.34711 1.82511 1.45948 1.48412 1.35500 1.06568 1.21152 0.99358 0.98190 0.79252 1.22424 0.94670 0.99410 0.95037 0.89275 1.22719 0.97734 1.01386 0.94379 1.20913 0.85586 0.96861 0.90930 1.44839 1.06480 1.71128 1.13162 1.19481 0.86265 1.32081 0.98935 0.89705 1.25667 1.01825 1.02336 0.96537 1.70193 1.33588 1.50669 1.05765 0.85090 0.79694 0.78142 0.76491 1.21286 1.22446 1.19268 1.21802 0.92755 0.95340 0.88844 1.22355 1.04363 0.97914 0.93357 1.21116 0.76189 0.82552 0.89840 1.90712 1.53139 1.50424 1.50151 0.92566 0.93754 0.89956 0.90113 0.92681 0.90566 0.84934 0.87014 0.90673 0.74868 0.91959 0.90832 0.89830 0.91031 0.97133 0.97971 0.94563 0.96144 0.93011 0.87745 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.41 -8.74 10.23 -148.98 -1.52 -10.27 16 3 C 0.04 0.47 6.28 71.98 0.45 0.92 16 4 C 0.12 1.54 6.33 86.38 0.55 2.09 16 5 N -0.61 -9.80 2.90 -817.89 -2.37 -12.17 16 6 C 0.12 1.50 6.69 86.83 0.58 2.08 16 7 C -0.11 -1.37 3.54 -10.48 -0.04 -1.41 16 8 H 0.15 1.04 8.14 -2.39 -0.02 1.02 16 9 C 0.53 9.87 7.06 87.65 0.62 10.49 16 10 O -0.57 -15.08 15.53 -3.02 -0.05 -15.13 16 11 N -0.71 -12.93 5.44 -463.07 -2.52 -15.45 16 12 C 0.14 3.31 5.12 86.38 0.44 3.75 16 13 C -0.10 -2.72 3.07 -9.40 -0.03 -2.74 16 14 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 15 C -0.12 -4.13 6.42 31.79 0.20 -3.93 16 16 C 0.18 8.76 5.37 86.73 0.47 9.22 16 17 N -0.63 -31.05 3.40 -691.72 -2.35 -33.40 16 18 C -0.24 -13.02 10.28 84.03 0.86 -12.16 16 19 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 20 C -0.07 -4.00 5.49 84.86 0.47 -3.54 16 21 N -0.95 -57.20 10.31 21.65 0.22 -56.98 16 22 Si 0.98 45.27 29.55 68.60 2.03 47.30 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 C 0.14 4.95 6.56 86.84 0.57 5.52 16 27 C -0.14 -2.05 6.40 30.60 0.20 -1.85 16 28 C 0.51 11.10 7.73 87.92 0.68 11.78 16 29 O -0.57 -17.46 17.46 -3.03 -0.05 -17.51 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 1.22 7.93 -2.39 -0.02 1.20 16 36 H 0.13 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 1.23 7.01 -2.39 -0.02 1.21 16 39 H 0.41 5.90 8.43 -92.71 -0.78 5.11 16 40 H 0.06 1.58 8.03 -2.39 -0.02 1.56 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.07 2.24 8.04 -2.38 -0.02 2.22 16 44 H 0.01 0.57 7.38 -2.39 -0.02 0.55 16 45 H 0.00 0.11 7.50 -2.39 -0.02 0.09 16 46 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 47 H 0.02 0.75 7.96 -2.39 -0.02 0.73 16 48 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 49 H 0.10 1.65 7.89 -2.39 -0.02 1.63 16 50 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -81.11 405.64 0.80 -80.31 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.15 Total: 11.40 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: 7.27 Total: 21.89 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -7.01 Total: -117.99 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -1.62 Total: -42.91 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -81.11 0.80 -80.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028578798.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.834 kcal (2) G-P(sol) polarization free energy of solvation -81.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds