Wall clock time and date at job start Sat Apr 11 2020 05:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99899 * 2 1 4 4 C 1.53002 * 109.46721 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47044 * 65.00418 * 4 3 2 6 6 C 1.46764 * 124.34707 * 269.99719 * 5 4 3 7 7 C 1.54480 * 105.47241 * 197.03818 * 6 5 4 8 8 H 1.08997 * 110.97191 * 92.70203 * 7 6 5 9 9 C 1.50705 * 110.96717 * 216.42653 * 7 6 5 10 10 O 1.21280 * 120.00205 * 0.02562 * 9 7 6 11 11 N 1.34775 * 119.99857 * 180.02562 * 9 7 6 12 12 C 1.46497 * 119.99921 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47251 * 180.02562 * 12 11 9 14 14 H 1.09005 * 110.88371 * 302.57500 * 13 12 11 15 15 C 1.55156 * 111.00926 * 178.64837 * 13 12 11 16 16 C 1.54322 * 102.94467 * 206.42388 * 15 13 12 17 17 N 1.47029 * 107.27029 * 22.18857 * 16 15 13 18 18 C 1.36942 * 125.64562 * 181.09630 * 17 16 15 19 19 H 1.07994 * 119.99560 * 179.97438 * 18 17 16 20 20 C 1.38810 * 119.99817 * 359.95810 * 18 17 16 21 21 N 1.31616 * 120.00746 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99579 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47172 * 60.00101 * 22 20 18 24 24 H 1.48502 * 109.46920 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46867 * 299.99703 * 22 20 18 26 26 C 1.47423 * 108.70392 * 1.06159 * 17 16 15 27 27 C 1.54784 * 101.69261 * 334.38904 * 7 6 5 28 28 C 1.34420 * 124.35242 * 90.02020 * 5 4 3 29 29 O 1.21283 * 124.93917 * 359.53285 * 28 5 4 30 30 H 1.09001 * 109.46878 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46822 * 300.00191 * 1 2 3 32 32 H 1.08999 * 109.46562 * 60.00071 * 1 2 3 33 33 H 1.08995 * 109.47021 * 60.00337 * 3 2 1 34 34 H 1.09000 * 109.47059 * 300.00116 * 3 2 1 35 35 H 1.08993 * 109.47350 * 304.99837 * 4 3 2 36 36 H 1.08998 * 109.46759 * 184.99822 * 4 3 2 37 37 H 1.09003 * 110.24343 * 316.03631 * 6 5 4 38 38 H 1.09004 * 110.24843 * 77.94733 * 6 5 4 39 39 H 0.97003 * 119.99958 * 359.97438 * 11 9 7 40 40 H 1.09005 * 109.47090 * 299.99704 * 12 11 9 41 41 H 1.08992 * 109.47755 * 60.00021 * 12 11 9 42 42 H 1.09004 * 110.71508 * 324.78445 * 15 13 12 43 43 H 1.08997 * 110.72278 * 88.05689 * 15 13 12 44 44 H 1.09005 * 109.88157 * 262.77646 * 16 15 13 45 45 H 1.08996 * 109.88380 * 141.60625 * 16 15 13 46 46 H 0.96993 * 120.00843 * 179.97438 * 21 20 18 47 47 H 1.08993 * 110.36510 * 217.03187 * 26 17 16 48 48 H 1.08998 * 110.45870 * 94.75308 * 26 17 16 49 49 H 1.08996 * 110.61291 * 266.40068 * 27 7 6 50 50 H 1.09001 * 110.42713 * 143.71017 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1391 -0.8815 -1.4461 7 6 5.0111 -1.0309 -2.7125 8 1 6.0675 -1.0999 -2.4529 9 6 4.5797 -2.2235 -3.5267 10 8 3.6557 -2.9129 -3.1499 11 7 5.2207 -2.5240 -4.6735 12 6 4.8010 -3.6830 -5.4652 13 6 5.6861 -3.7994 -6.7078 14 1 5.6423 -2.8872 -7.3029 15 6 5.2935 -5.0375 -7.5564 16 6 6.6064 -5.3846 -8.2895 17 7 7.7088 -4.8040 -7.5089 18 6 9.0376 -4.8694 -7.8336 19 1 9.7736 -4.4083 -7.1918 20 6 9.4384 -5.5287 -8.9876 21 7 8.5414 -6.0905 -9.7699 22 14 11.2510 -5.6186 -9.4301 23 1 11.9916 -6.3115 -8.3454 24 1 11.4138 -6.3708 -10.7001 25 1 11.7885 -4.2443 -9.5970 26 6 7.1468 -4.1390 -6.3193 27 6 4.7046 0.2883 -3.4619 28 6 4.2852 1.2452 -2.3679 29 8 4.2301 2.4513 -2.4834 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8508 0.5685 0.8427 36 1 3.9785 2.1765 0.0902 37 1 4.6432 -1.3239 -0.5868 38 1 3.1682 -1.3533 -1.5973 39 1 5.9595 -1.9725 -4.9751 40 1 4.8978 -4.5875 -4.8647 41 1 3.7619 -3.5583 -5.7694 42 1 4.9808 -5.8613 -6.9147 43 1 4.5092 -4.7835 -8.2694 44 1 6.5959 -4.9559 -9.2917 45 1 6.7234 -6.4666 -8.3481 46 1 8.8214 -6.5509 -10.5764 47 1 7.7017 -3.2278 -6.0964 48 1 7.1645 -4.8124 -5.4624 49 1 3.8930 0.1448 -4.1751 50 1 5.5979 0.6549 -3.9676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028578801.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:34 Heat of formation + Delta-G solvation = -89.764538 kcal Electronic energy + Delta-G solvation = -29615.699333 eV Core-core repulsion = 25450.730159 eV Total energy + Delta-G solvation = -4164.969174 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.09445 -39.50067 -38.18111 -37.71956 -36.42997 -34.73529 -33.74188 -32.48841 -30.13926 -29.49368 -28.29681 -27.94698 -26.70604 -25.65804 -24.21435 -23.36750 -22.66327 -20.59316 -19.97662 -19.80554 -19.55195 -17.84250 -17.31702 -16.88448 -16.75130 -16.32450 -16.06960 -15.81182 -15.46927 -15.34539 -14.99008 -14.68912 -14.52010 -13.99520 -13.95211 -13.66987 -13.48573 -13.33967 -12.90484 -12.72198 -12.49713 -12.38382 -12.33938 -12.06048 -11.87571 -11.70713 -11.64400 -11.50662 -11.41568 -10.92893 -10.79926 -10.50508 -10.29830 -10.18233 -10.08202 -10.01068 -9.90704 -9.74244 -9.67489 -9.06999 -9.00726 -8.61980 -6.85861 -5.73287 -3.07145 2.26092 2.45699 2.59101 3.09622 3.38060 3.38885 3.43175 3.44559 3.95572 4.04584 4.46713 4.49357 4.54130 4.60155 4.72314 4.83357 4.87796 4.98971 5.00738 5.08068 5.08744 5.17954 5.20385 5.28739 5.33435 5.35179 5.38967 5.44334 5.51488 5.65229 5.74100 5.85930 6.00345 6.02328 6.15961 6.30899 6.37328 6.45922 6.50210 6.64367 6.67375 6.80995 6.87416 7.43245 7.53331 7.60904 7.80402 7.84175 8.10760 8.23986 9.19837 9.80345 10.46108 11.38321 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021987 B = 0.001963 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.194082 B =14257.830077 C =15008.661992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.041 3.959 4 C 0.130 3.870 5 N -0.612 5.612 6 C 0.122 3.878 7 C -0.127 4.127 8 H 0.119 0.881 9 C 0.523 3.477 10 O -0.537 6.537 11 N -0.719 5.719 12 C 0.132 3.868 13 C -0.118 4.118 14 H 0.080 0.920 15 C -0.135 4.135 16 C 0.177 3.823 17 N -0.606 5.606 18 C -0.230 4.230 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.142 3.858 27 C -0.144 4.144 28 C 0.520 3.480 29 O -0.534 6.534 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.404 0.596 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.046 0.954 45 H 0.043 0.957 46 H 0.253 0.747 47 H 0.035 0.965 48 H 0.019 0.981 49 H 0.110 0.890 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.461 13.288 19.071 26.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.037 4.037 4 C 0.008 3.992 5 N -0.346 5.346 6 C -0.001 4.001 7 C -0.149 4.149 8 H 0.137 0.863 9 C 0.308 3.692 10 O -0.414 6.414 11 N -0.370 5.370 12 C 0.009 3.991 13 C -0.138 4.138 14 H 0.098 0.902 15 C -0.174 4.174 16 C 0.052 3.948 17 N -0.332 5.332 18 C -0.359 4.359 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.743 3.257 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.016 3.984 27 C -0.184 4.184 28 C 0.308 3.692 29 O -0.411 6.411 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.238 0.762 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.053 0.947 48 H 0.037 0.963 49 H 0.128 0.872 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.931 13.167 19.157 27.100 hybrid contribution 1.102 0.308 -0.455 1.231 sum -12.828 13.475 18.702 26.380 Atomic orbital electron populations 1.22740 0.80890 1.02962 0.99802 1.87915 1.19824 1.27279 1.95398 1.23041 0.94279 0.85468 1.00889 1.21438 0.92247 0.99791 0.85749 1.48212 1.66325 1.07922 1.12140 1.21996 1.01599 0.80116 0.96350 1.22311 1.02785 0.93606 0.96162 0.86327 1.19995 0.82574 0.85356 0.81265 1.90723 1.29039 1.51642 1.69966 1.46048 1.36405 1.31131 1.23417 1.21431 0.98243 0.87801 0.91651 1.22625 0.96461 0.99770 0.94958 0.90183 1.22860 1.00108 0.95912 0.98501 1.21153 0.82282 0.97784 0.93549 1.44470 1.02831 1.63305 1.22636 1.18997 0.81546 1.30000 1.05311 0.90535 1.24812 0.97842 1.00345 0.97473 1.69946 1.31358 1.40542 1.15067 0.86197 0.84436 0.77565 0.77530 1.21175 1.21596 1.21171 1.21559 0.90615 0.95269 0.90960 1.22358 1.05085 0.93117 0.97840 1.20791 0.76293 0.88088 0.84023 1.90733 1.54398 1.13616 1.82325 0.89419 0.94182 0.94154 0.92185 0.92827 0.89191 0.88308 0.89849 0.88277 0.76186 0.91207 0.91580 0.92191 0.91968 0.93551 0.93904 0.93675 0.94681 0.96335 0.87227 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.51 10.53 -35.23 -0.37 -3.88 16 3 C 0.04 0.31 6.28 37.16 0.23 0.54 16 4 C 0.13 0.94 6.32 -4.04 -0.03 0.91 16 5 N -0.61 -5.52 2.88 -172.41 -0.50 -6.02 16 6 C 0.12 1.06 6.58 -3.12 -0.02 1.04 16 7 C -0.13 -1.02 3.56 -90.05 -0.32 -1.34 16 8 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 9 C 0.52 5.84 7.06 -10.98 -0.08 5.76 16 10 O -0.54 -7.94 15.51 5.56 0.09 -7.85 16 11 N -0.72 -7.82 5.41 -60.30 -0.33 -8.14 16 12 C 0.13 1.73 5.12 -4.04 -0.02 1.70 16 13 C -0.12 -1.83 3.10 -88.47 -0.27 -2.11 16 14 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.13 -2.36 6.42 -24.90 -0.16 -2.52 16 16 C 0.18 4.17 5.37 -3.06 -0.02 4.15 16 17 N -0.61 -14.98 3.40 -170.07 -0.58 -15.56 16 18 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 19 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 21 N -0.92 -26.78 10.31 55.49 0.57 -26.21 16 22 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.14 2.70 6.41 -2.53 -0.02 2.69 16 27 C -0.14 -1.18 6.41 -26.66 -0.17 -1.35 16 28 C 0.52 5.57 8.02 -10.86 -0.09 5.48 16 29 O -0.53 -7.55 17.60 5.55 0.10 -7.45 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.67 7.93 -51.93 -0.41 0.26 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.10 1.09 6.97 -51.93 -0.36 0.72 16 39 H 0.40 3.68 8.34 -40.82 -0.34 3.34 16 40 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.99 8.04 -51.93 -0.42 0.58 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 45 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 46 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 47 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.02 0.37 8.00 -51.93 -0.42 -0.05 16 49 H 0.11 0.93 7.90 -51.93 -0.41 0.52 16 50 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 406.06 15.07 6.12 6.12 Total: -1.00 -34.79 406.06 -8.61 -43.40 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -8.59 Total: -0.73 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -0.09 Total: 9.53 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.83 Total: -55.92 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.19 Total: -19.18 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.79 -8.61 -43.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028578801.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.368 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds