Wall clock time and date at job start Sat Apr 11 2020 05:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00110 * 2 1 4 4 H 1.48501 * 109.47017 * 264.63903 * 3 2 1 5 5 H 1.48498 * 109.47164 * 24.63308 * 3 2 1 6 6 H 1.48499 * 109.47413 * 144.63936 * 3 2 1 7 7 C 1.38817 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99962 * 335.04176 * 7 2 1 9 9 N 1.36931 * 119.99879 * 154.76757 * 7 2 1 10 10 C 1.47429 * 125.65004 * 344.49232 * 9 7 2 11 11 C 1.54907 * 104.83612 * 204.09237 * 10 9 7 12 12 C 1.55164 * 101.57844 * 322.99214 * 11 10 9 13 13 H 1.09002 * 110.71485 * 276.95726 * 12 11 10 14 14 N 1.46894 * 110.71844 * 153.86461 * 12 11 10 15 15 C 1.46898 * 111.00000 * 184.18830 * 14 12 11 16 16 C 1.53234 * 109.34274 * 172.74665 * 15 14 12 17 17 N 1.47077 * 108.52041 * 53.82943 * 16 15 14 18 18 C 1.34776 * 120.88109 * 128.79547 * 17 16 15 19 19 O 1.21282 * 120.00484 * 180.02562 * 18 17 16 20 20 C 1.50706 * 120.00409 * 0.02562 * 18 17 16 21 21 F 1.39899 * 110.01156 * 54.29642 * 20 18 17 22 22 C 1.54270 * 110.02704 * 292.90917 * 20 18 17 23 23 C 1.54958 * 104.15939 * 217.12982 * 22 20 18 24 24 C 1.54892 * 102.77653 * 37.89221 * 23 22 20 25 25 C 1.53862 * 110.03571 * 175.69117 * 20 18 17 26 26 C 1.47076 * 118.24152 * 308.81519 * 17 16 15 27 27 C 1.46902 * 111.00122 * 59.88602 * 14 12 11 28 28 C 1.47019 * 125.65122 * 164.18482 * 9 7 2 29 29 H 0.97004 * 120.00221 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.36467 * 322.93183 * 10 9 7 31 31 H 1.08994 * 110.36898 * 85.24916 * 10 9 7 32 32 H 1.09002 * 111.00152 * 81.05744 * 11 10 9 33 33 H 1.08997 * 111.00544 * 204.87635 * 11 10 9 34 34 H 1.09007 * 109.49271 * 292.70971 * 15 14 12 35 35 H 1.09002 * 109.49284 * 52.78433 * 15 14 12 36 36 H 1.08997 * 109.63075 * 294.11594 * 16 15 14 37 37 H 1.08997 * 109.63211 * 173.53774 * 16 15 14 38 38 H 1.08993 * 110.48776 * 335.78180 * 22 20 18 39 39 H 1.09005 * 110.48153 * 98.42675 * 22 20 18 40 40 H 1.09002 * 110.72404 * 279.57993 * 23 22 20 41 41 H 1.09000 * 110.92501 * 156.29652 * 23 22 20 42 42 H 1.09004 * 110.48628 * 203.41000 * 24 23 22 43 43 H 1.08994 * 110.48806 * 80.75947 * 24 23 22 44 44 H 1.09005 * 110.03320 * 238.56434 * 25 20 18 45 45 H 1.09004 * 110.03884 * 359.97438 * 25 20 18 46 46 H 1.09001 * 109.62790 * 291.47923 * 26 17 16 47 47 H 1.08996 * 109.79347 * 170.99094 * 26 17 16 48 48 H 1.08998 * 109.49324 * 307.21006 * 27 14 12 49 49 H 1.09006 * 109.49279 * 67.26651 * 27 14 12 50 50 H 1.09002 * 109.88346 * 298.39566 * 28 9 7 51 51 H 1.08998 * 109.88405 * 59.55711 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6110 1.9809 -1.3940 5 1 1.3956 2.6827 0.5835 6 1 3.4865 1.4755 0.8102 7 6 2.0103 -1.2022 0.0005 8 1 1.5459 -2.0937 0.3956 9 7 3.2816 -1.2590 -0.5050 10 6 3.9134 -0.2363 -1.3584 11 6 5.0144 -0.9964 -2.1393 12 6 5.5259 -1.9931 -1.0658 13 1 6.2570 -1.5155 -0.4135 14 7 6.0990 -3.1888 -1.6979 15 6 6.4947 -4.1797 -0.6882 16 6 6.9164 -5.4763 -1.3874 17 7 7.9507 -5.1554 -2.3826 18 6 9.1157 -5.8323 -2.4124 19 8 9.9578 -5.5541 -3.2397 20 6 9.3723 -6.9350 -1.4176 21 9 8.3349 -7.8725 -1.4639 22 6 9.4904 -6.3472 0.0038 23 6 10.5966 -7.1994 0.6757 24 6 11.6046 -7.4240 -0.4788 25 6 10.7156 -7.6197 -1.7244 26 6 7.6801 -4.0760 -3.3443 27 6 7.2283 -2.8344 -2.5680 28 6 4.2448 -2.3469 -0.2813 29 1 -0.4851 0.8401 0.0004 30 1 3.1827 0.1866 -2.0478 31 1 4.3563 0.5485 -0.7454 32 1 4.5926 -1.5254 -2.9940 33 1 5.8082 -0.3192 -2.4544 34 1 7.3308 -3.7918 -0.1061 35 1 5.6524 -4.3807 -0.0262 36 1 6.0546 -5.9209 -1.8852 37 1 7.3188 -6.1742 -0.6532 38 1 9.7895 -5.3001 -0.0400 39 1 8.5474 -6.4535 0.5401 40 1 10.1925 -8.1493 1.0259 41 1 11.0638 -6.6543 1.4958 42 1 12.2038 -8.3156 -0.2940 43 1 12.2455 -6.5510 -0.6009 44 1 10.5595 -8.6827 -1.9084 45 1 11.1820 -7.1548 -2.5931 46 1 6.8917 -4.3858 -4.0302 47 1 8.5854 -3.8470 -3.9065 48 1 6.9181 -2.0599 -3.2693 49 1 8.0541 -2.4649 -1.9598 50 1 4.4700 -2.4300 0.7819 51 1 3.8345 -3.2870 -0.6499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046040456.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:42 Heat of formation + Delta-G solvation = -37.447383 kcal Electronic energy + Delta-G solvation = -31268.053510 eV Core-core repulsion = 27117.725768 eV Total energy + Delta-G solvation = -4150.327742 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.32489 -40.59437 -39.02289 -37.44554 -36.86113 -34.49572 -32.18173 -31.69844 -29.97392 -29.33495 -29.05403 -28.37956 -26.40572 -24.24103 -23.70038 -22.61969 -21.49248 -21.00714 -20.59513 -19.79245 -19.24743 -18.16217 -17.02292 -16.82337 -16.39364 -16.00582 -15.61862 -15.36266 -15.16854 -15.02075 -14.93097 -14.50615 -14.47504 -14.07173 -13.74481 -13.70619 -13.57750 -13.15794 -12.80360 -12.63450 -12.41978 -12.33167 -12.00661 -11.94858 -11.81928 -11.63276 -11.57833 -11.46327 -11.45841 -11.28478 -11.08895 -11.02657 -11.00903 -10.72851 -10.40711 -10.08076 -10.03826 -9.96633 -9.43723 -9.05149 -8.66754 -8.32571 -7.07104 -5.94916 -3.21784 2.08735 2.50259 3.34089 3.47941 3.49750 3.65311 3.72828 3.82670 3.97274 4.15954 4.55212 4.57454 4.68933 4.72055 4.76462 4.85991 4.89263 4.96632 4.97054 4.99797 5.10192 5.11778 5.18496 5.28323 5.32541 5.34720 5.43695 5.45126 5.51394 5.54600 5.56227 5.58017 5.66643 5.68307 5.75619 5.83478 5.84180 5.89575 6.10929 6.14346 6.21322 6.44829 6.48211 6.59438 6.76766 6.97289 7.01390 7.20548 7.66809 7.69577 8.30782 8.83434 9.69356 10.17720 11.20967 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.024844 B = 0.002500 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.778771 B =11197.534777 C =11550.517096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.021 3.979 3 Si 0.879 3.121 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.279 1.279 7 C -0.240 4.240 8 H 0.093 0.907 9 N -0.607 5.607 10 C 0.113 3.887 11 C -0.122 4.122 12 C 0.070 3.930 13 H 0.046 0.954 14 N -0.524 5.524 15 C 0.039 3.961 16 C 0.102 3.898 17 N -0.599 5.599 18 C 0.505 3.495 19 O -0.529 6.529 20 C 0.102 3.898 21 F -0.189 7.189 22 C -0.143 4.143 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.142 4.142 26 C 0.115 3.885 27 C 0.042 3.958 28 C 0.146 3.854 29 H 0.263 0.737 30 H 0.062 0.938 31 H 0.022 0.978 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.036 0.964 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.093 0.907 49 H 0.035 0.965 50 H 0.026 0.974 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.279 -14.262 -2.031 27.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.177 4.177 3 Si 0.709 3.291 4 H -0.212 1.212 5 H -0.230 1.230 6 H -0.205 1.205 7 C -0.367 4.367 8 H 0.110 0.890 9 N -0.334 5.334 10 C -0.013 4.013 11 C -0.160 4.160 12 C -0.038 4.038 13 H 0.064 0.936 14 N -0.250 5.250 15 C -0.090 4.090 16 C -0.020 4.020 17 N -0.331 5.331 18 C 0.290 3.710 19 O -0.406 6.406 20 C 0.081 3.919 21 F -0.170 7.170 22 C -0.181 4.181 23 C -0.161 4.161 24 C -0.160 4.160 25 C -0.180 4.180 26 C -0.007 4.007 27 C -0.087 4.087 28 C 0.021 3.979 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.121 0.879 46 H 0.098 0.902 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.054 0.946 50 H 0.044 0.956 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 23.072 -14.261 -2.726 27.261 hybrid contribution 0.793 1.416 0.648 1.748 sum 23.866 -12.844 -2.078 27.182 Atomic orbital electron populations 1.69888 1.05538 1.26569 1.52912 1.24916 0.95088 0.97332 1.00388 0.87029 0.79281 0.85055 0.77737 1.21189 1.23031 1.20495 1.18621 0.85853 0.95865 1.36393 0.88971 1.44725 1.12073 1.20014 1.56564 1.21916 0.94058 0.92346 0.92956 1.22819 0.98136 0.97008 0.98070 1.22698 0.96088 0.89355 0.95631 0.93558 1.61973 1.29911 1.12210 1.20856 1.22514 1.00341 0.92206 0.93958 1.22215 0.91277 0.97233 0.91321 1.48158 1.15941 1.35288 1.33742 1.20721 0.81842 0.83476 0.84936 1.90681 1.44540 1.67447 1.37884 1.21784 0.87173 0.86428 0.96514 1.92913 1.60088 1.66588 1.97403 1.23118 1.01634 1.00938 0.92433 1.22547 0.95513 1.00166 0.97892 1.22357 0.97573 1.02480 0.93556 1.22751 0.92561 1.01648 1.01068 1.21807 1.01911 0.85805 0.91157 1.22470 0.92192 0.97075 0.96935 1.21293 0.87792 0.93144 0.95719 0.92738 0.92029 0.96003 0.90009 0.92030 0.94551 0.88526 0.89732 0.88732 0.89516 0.88904 0.90595 0.90427 0.90650 0.90945 0.89696 0.87942 0.90190 0.88710 0.88904 0.94640 0.95629 0.93639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.89 13.97 55.49 0.78 -27.12 16 2 C 0.02 0.62 5.40 -17.43 -0.09 0.52 16 3 Si 0.88 22.47 24.30 -169.99 -4.13 18.34 16 4 H -0.28 -6.98 6.42 56.52 0.36 -6.62 16 5 H -0.30 -7.84 7.11 56.52 0.40 -7.43 16 6 H -0.28 -7.06 6.74 56.52 0.38 -6.67 16 7 C -0.24 -6.80 10.56 -15.06 -0.16 -6.96 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 9 N -0.61 -14.57 3.23 -170.07 -0.55 -15.12 16 10 C 0.11 2.42 4.69 -2.53 -0.01 2.41 16 11 C -0.12 -1.99 5.34 -24.58 -0.13 -2.12 16 12 C 0.07 1.09 2.64 -65.87 -0.17 0.92 16 13 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 14 N -0.52 -6.73 4.45 -224.14 -1.00 -7.73 16 15 C 0.04 0.42 5.46 -3.70 -0.02 0.40 16 16 C 0.10 1.01 5.76 -3.61 -0.02 0.99 16 17 N -0.60 -6.56 3.01 -172.47 -0.52 -7.07 16 18 C 0.50 5.87 6.68 -10.98 -0.07 5.80 16 19 O -0.53 -7.48 14.68 5.56 0.08 -7.40 16 20 C 0.10 0.96 1.08 -90.66 -0.10 0.86 16 21 F -0.19 -1.95 15.06 2.25 0.03 -1.91 16 22 C -0.14 -1.04 5.18 -25.03 -0.13 -1.17 16 23 C -0.12 -0.73 6.91 -24.70 -0.17 -0.90 16 24 C -0.12 -0.77 6.83 -25.07 -0.17 -0.94 16 25 C -0.14 -1.18 6.25 -25.62 -0.16 -1.34 16 26 C 0.12 1.24 6.59 -3.60 -0.02 1.22 16 27 C 0.04 0.47 5.46 -3.70 -0.02 0.45 16 28 C 0.15 2.81 5.73 -3.06 -0.02 2.79 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.06 1.43 6.48 -51.93 -0.34 1.09 16 31 H 0.02 0.49 5.76 -51.93 -0.30 0.19 16 32 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.06 0.85 7.93 -51.93 -0.41 0.44 16 34 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 1.08 6.83 -51.93 -0.35 0.72 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 0.80 3.51 -51.93 -0.18 0.62 16 38 H 0.09 0.66 7.85 -51.93 -0.41 0.25 16 39 H 0.09 0.60 6.57 -51.93 -0.34 0.26 16 40 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.64 8.02 -51.93 -0.42 0.23 16 45 H 0.10 1.00 6.40 -51.93 -0.33 0.67 16 46 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 1.04 7.07 -51.93 -0.37 0.67 16 48 H 0.09 0.99 6.77 -51.93 -0.35 0.64 16 49 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.05 0.88 7.74 -51.93 -0.40 0.48 16 LS Contribution 376.38 15.07 5.67 5.67 Total: -1.00 -32.57 376.38 -9.58 -42.15 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -8.47 Total: -2.74 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -1.48 Total: 2.93 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -1.29 Total: -57.05 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: 0.08 Total: -7.40 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.03 Total: -1.91 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.13 Total: 18.34 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.57 -9.58 -42.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046040456.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.700 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds