Wall clock time and date at job start Sat Apr 11 2020 05:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86792 * 120.00313 * 2 1 4 4 H 1.48504 * 109.47527 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47060 * 59.99899 * 3 2 1 6 6 H 1.48509 * 109.46892 * 299.99784 * 3 2 1 7 7 C 1.38820 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99924 * 318.38084 * 7 2 1 9 9 N 1.36931 * 119.99895 * 138.39085 * 7 2 1 10 10 C 1.47015 * 125.65113 * 337.50786 * 9 7 2 11 11 C 1.54330 * 107.27452 * 181.02644 * 10 9 7 12 12 C 1.55156 * 102.93794 * 22.19373 * 11 10 9 13 13 H 1.09000 * 111.00563 * 82.61323 * 12 11 10 14 14 N 1.46905 * 110.99976 * 206.42630 * 12 11 10 15 15 C 1.46901 * 110.99945 * 304.29678 * 14 12 11 16 16 C 1.53239 * 109.34144 * 172.74657 * 15 14 12 17 17 N 1.47083 * 108.51980 * 53.83118 * 16 15 14 18 18 C 1.34774 * 120.88104 * 128.79152 * 17 16 15 19 19 O 1.21283 * 119.99989 * 175.58433 * 18 17 16 20 20 C 1.50708 * 119.99956 * 355.58560 * 18 17 16 21 21 C 1.53005 * 112.84666 * 293.42849 * 20 18 17 22 22 F 1.39898 * 109.47048 * 304.29479 * 21 20 18 23 23 C 1.53773 * 113.61308 * 162.23144 * 20 18 17 24 24 C 1.53960 * 87.01892 * 220.04797 * 23 20 18 25 25 C 1.53776 * 113.61334 * 64.62019 * 20 18 17 26 26 C 1.47076 * 118.23965 * 308.81815 * 17 16 15 27 27 C 1.46903 * 110.99972 * 180.02562 * 14 12 11 28 28 C 1.47430 * 125.64732 * 157.20347 * 9 7 2 29 29 H 0.97004 * 120.00033 * 185.11908 * 1 2 3 30 30 H 1.09005 * 109.88169 * 300.44197 * 10 9 7 31 31 H 1.08999 * 109.88738 * 61.60689 * 10 9 7 32 32 H 1.08999 * 110.71811 * 140.55488 * 11 10 9 33 33 H 1.08994 * 110.71609 * 263.65019 * 11 10 9 34 34 H 1.08993 * 109.49721 * 292.71208 * 15 14 12 35 35 H 1.09005 * 109.48681 * 52.79199 * 15 14 12 36 36 H 1.08999 * 109.62976 * 294.12624 * 16 15 14 37 37 H 1.08996 * 109.63113 * 173.54525 * 16 15 14 38 38 H 1.08999 * 109.46971 * 64.29881 * 21 20 18 39 39 H 1.08995 * 109.46350 * 184.29796 * 21 20 18 40 40 H 1.08996 * 113.62052 * 334.56402 * 23 20 18 41 41 H 1.09001 * 113.61690 * 105.47000 * 23 20 18 42 42 H 1.09003 * 113.53474 * 270.81447 * 24 23 20 43 43 H 1.09004 * 113.74105 * 139.94709 * 24 23 20 44 44 H 1.08999 * 113.62021 * 254.53015 * 25 20 18 45 45 H 1.09004 * 113.61525 * 25.43973 * 25 20 18 46 46 H 1.09000 * 109.62852 * 291.47177 * 26 17 16 47 47 H 1.09000 * 109.63050 * 170.88969 * 26 17 16 48 48 H 1.09003 * 109.49150 * 307.20959 * 27 14 12 49 49 H 1.08996 * 109.49484 * 67.29142 * 27 14 12 50 50 H 1.08995 * 110.36566 * 274.74638 * 28 9 7 51 51 H 1.09000 * 110.36556 * 37.06352 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3963 1.2125 6 1 1.8915 2.3963 -1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 1.6746 -2.0197 0.6203 9 7 3.1204 -1.3515 -0.7881 10 6 3.4317 -0.5622 -1.9887 11 6 4.7622 -1.0988 -2.5576 12 6 4.8383 -2.5327 -1.9697 13 1 4.2540 -3.2318 -2.5680 14 7 6.2325 -2.9807 -1.8534 15 6 6.9216 -2.8985 -3.1482 16 6 8.4112 -3.1987 -2.9503 17 7 8.5396 -4.4902 -2.2583 18 6 9.3419 -5.4582 -2.7437 19 8 9.4983 -6.4861 -2.1192 20 6 10.0448 -5.2635 -4.0626 21 6 9.0789 -5.2072 -5.2479 22 9 8.2911 -6.3632 -5.2627 23 6 11.2283 -6.2216 -4.2772 24 6 11.9779 -5.0283 -4.8971 25 6 11.0719 -4.1191 -4.0501 26 6 7.7688 -4.6975 -1.0230 27 6 6.3045 -4.3385 -1.2973 28 6 4.2046 -2.3262 -0.5689 29 1 -0.4850 -0.8367 0.0750 30 1 2.6383 -0.6811 -2.7265 31 1 3.5394 0.4895 -1.7233 32 1 4.7313 -1.1297 -3.6467 33 1 5.6007 -0.4931 -2.2140 34 1 6.4920 -3.6269 -3.8358 35 1 6.8041 -1.8960 -3.5596 36 1 8.8660 -2.4132 -2.3467 37 1 8.9060 -3.2520 -3.9200 38 1 8.4372 -4.3313 -5.1524 39 1 9.6465 -5.1424 -6.1761 40 1 11.6724 -6.5817 -3.3492 41 1 11.0186 -7.0227 -4.9860 42 1 11.8192 -4.9247 -5.9706 43 1 13.0304 -4.9782 -4.6180 44 1 10.7362 -3.2253 -4.5758 45 1 11.4733 -3.9034 -3.0598 46 1 8.1619 -4.0561 -0.2342 47 1 7.8389 -5.7418 -0.7186 48 1 5.7394 -4.3806 -0.3662 49 1 5.8836 -5.0467 -2.0111 50 1 4.9406 -1.9246 0.1276 51 1 3.7996 -3.2661 -0.1939 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046063704.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:50 Heat of formation + Delta-G solvation = -40.203293 kcal Electronic energy + Delta-G solvation = -31312.029556 eV Core-core repulsion = 27161.582309 eV Total energy + Delta-G solvation = -4150.447247 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.73437 -41.90136 -40.30900 -38.92926 -38.07996 -35.68644 -34.23676 -32.60374 -31.16560 -30.24174 -29.42593 -27.69435 -26.75959 -25.93721 -25.08467 -24.54334 -22.83033 -22.01412 -21.32965 -20.59261 -19.68919 -19.51665 -18.44073 -17.67049 -17.20662 -17.05822 -16.87124 -16.80859 -16.37835 -16.01202 -15.77885 -15.71037 -15.46487 -15.32767 -15.11305 -14.93853 -14.49999 -14.42152 -13.95834 -13.68544 -13.48976 -13.40833 -13.13968 -13.04074 -12.91174 -12.71630 -12.69411 -12.50075 -12.34185 -12.15254 -12.09776 -11.98309 -11.86591 -11.75451 -11.60038 -11.39521 -11.29548 -11.25952 -10.63320 -10.36173 -9.89057 -9.35451 -9.20688 -8.61763 -5.40706 1.44466 1.46230 1.53670 1.75461 1.85301 2.51274 2.65421 2.95049 3.14564 3.17608 3.50875 3.53274 3.56530 3.64163 3.80660 3.84652 3.90900 3.95443 4.02346 4.13364 4.17198 4.19351 4.29932 4.35858 4.37850 4.43208 4.47088 4.57456 4.62516 4.68338 4.77745 4.78292 4.81068 4.83351 4.86075 4.95070 4.98114 5.01927 5.05835 5.10973 5.12040 5.14652 5.29229 5.35223 5.43960 5.71581 5.95631 6.02722 6.15217 6.34053 6.82132 7.04079 7.53718 8.24076 8.71979 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.025595 B = 0.002511 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.686007 B =11146.937273 C =11342.380682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.052 4.052 3 Si 1.090 2.910 4 H -0.263 1.263 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.352 4.352 8 H 0.029 0.971 9 N -0.622 5.622 10 C 0.121 3.879 11 C -0.104 4.104 12 C 0.086 3.914 13 H 0.041 0.959 14 N -0.523 5.523 15 C 0.033 3.967 16 C 0.107 3.893 17 N -0.609 5.609 18 C 0.525 3.475 19 O -0.586 6.586 20 C -0.149 4.149 21 C 0.077 3.923 22 F -0.235 7.235 23 C -0.120 4.120 24 C -0.127 4.127 25 C -0.110 4.110 26 C 0.123 3.877 27 C 0.048 3.952 28 C 0.140 3.860 29 H 0.252 0.748 30 H 0.019 0.981 31 H 0.023 0.977 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.033 0.967 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.124 0.876 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.109 0.891 43 H 0.084 0.916 44 H 0.114 0.886 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.025 0.975 50 H 0.031 0.969 51 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.413 -5.405 -15.575 32.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.252 4.252 3 Si 0.915 3.085 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.207 1.207 7 C -0.480 4.480 8 H 0.047 0.953 9 N -0.350 5.350 10 C -0.004 4.004 11 C -0.142 4.142 12 C -0.023 4.023 13 H 0.059 0.941 14 N -0.248 5.248 15 C -0.095 4.095 16 C -0.015 4.015 17 N -0.341 5.341 18 C 0.314 3.686 19 O -0.466 6.466 20 C -0.153 4.153 21 C 0.023 3.977 22 F -0.216 7.216 23 C -0.158 4.158 24 C -0.164 4.164 25 C -0.147 4.147 26 C 0.000 4.000 27 C -0.081 4.081 28 C 0.014 3.986 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.041 0.959 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.052 0.948 35 H 0.133 0.867 36 H 0.113 0.887 37 H 0.138 0.862 38 H 0.119 0.881 39 H 0.142 0.858 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.127 0.873 43 H 0.103 0.897 44 H 0.133 0.867 45 H 0.105 0.895 46 H 0.102 0.898 47 H 0.095 0.905 48 H 0.100 0.900 49 H 0.044 0.956 50 H 0.049 0.951 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 28.444 -4.047 -14.929 32.377 hybrid contribution -1.498 -2.947 0.579 3.356 sum 26.946 -6.995 -14.349 31.320 Atomic orbital electron populations 1.71073 1.07750 1.29961 1.47386 1.27153 0.95827 1.04288 0.97887 0.83423 0.75652 0.72477 0.76956 1.18810 1.22116 1.20681 1.19508 1.03918 0.97707 1.26901 0.95325 1.44746 1.21700 1.41719 1.26809 1.21634 0.96018 0.94726 0.88011 1.22603 0.96322 0.94435 1.00874 1.22561 0.87685 0.96259 0.95777 0.94088 1.61931 1.13465 1.23075 1.26313 1.22706 0.93974 1.03413 0.89452 1.22337 0.95835 0.83951 0.99357 1.48270 1.43929 1.15894 1.25984 1.20909 0.78254 0.82027 0.87393 1.90657 1.64350 1.29696 1.61873 1.22962 0.96258 1.04119 0.91959 1.22260 0.91913 0.85012 0.98503 1.92769 1.77006 1.54012 1.97809 1.22864 0.94077 0.97376 1.01508 1.22929 0.99561 0.93225 1.00665 1.23015 0.93457 0.95992 1.02239 1.21578 0.89572 1.01925 0.86902 1.22389 0.96634 0.88875 1.00222 1.21662 0.89463 0.92079 0.95365 0.93807 0.96294 0.95937 0.88230 0.88810 0.94822 0.86659 0.88720 0.86223 0.88117 0.85842 0.91011 0.91126 0.87314 0.89749 0.86740 0.89527 0.89829 0.90477 0.90020 0.95642 0.95094 0.96045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.49 13.70 21.65 0.30 -58.20 16 2 C -0.05 -3.12 5.19 84.86 0.44 -2.68 16 3 Si 1.09 52.58 26.28 68.60 1.80 54.39 16 4 H -0.26 -11.75 6.62 99.48 0.66 -11.09 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.35 -20.86 10.17 84.04 0.85 -20.01 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 9 N -0.62 -30.86 3.11 -691.54 -2.15 -33.01 16 10 C 0.12 5.03 6.13 86.73 0.53 5.56 16 11 C -0.10 -2.96 5.03 31.78 0.16 -2.80 16 12 C 0.09 2.63 2.73 46.38 0.13 2.75 16 13 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 14 N -0.52 -12.42 4.53 -861.42 -3.90 -16.32 16 15 C 0.03 0.53 5.43 86.38 0.47 1.00 16 16 C 0.11 1.32 5.45 86.35 0.47 1.79 16 17 N -0.61 -11.99 3.01 -817.92 -2.46 -14.46 16 18 C 0.52 11.94 6.44 87.66 0.56 12.50 16 19 O -0.59 -18.93 15.65 -3.04 -0.05 -18.98 16 20 C -0.15 -2.04 0.51 -52.40 -0.03 -2.07 16 21 C 0.08 0.86 6.46 71.98 0.46 1.32 16 22 F -0.23 -5.06 17.09 44.97 0.77 -4.29 16 23 C -0.12 -1.69 6.91 31.18 0.22 -1.47 16 24 C -0.13 -0.72 7.74 31.18 0.24 -0.48 16 25 C -0.11 -0.69 5.82 31.12 0.18 -0.51 16 26 C 0.12 2.82 6.58 86.35 0.57 3.39 16 27 C 0.05 1.19 5.52 86.39 0.48 1.66 16 28 C 0.14 5.66 5.96 86.93 0.52 6.18 16 29 H 0.25 16.17 8.73 -92.71 -0.81 15.36 16 30 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.02 0.97 4.40 -2.39 -0.01 0.96 16 32 H 0.10 2.15 7.96 -2.39 -0.02 2.13 16 33 H 0.09 2.38 8.10 -2.39 -0.02 2.36 16 34 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.12 1.42 6.64 -2.38 -0.02 1.40 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.12 0.73 3.10 -2.39 -0.01 0.72 16 38 H 0.10 0.74 5.89 -2.39 -0.01 0.73 16 39 H 0.12 0.51 7.31 -2.39 -0.02 0.50 16 40 H 0.07 1.33 7.73 -2.39 -0.02 1.32 16 41 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 42 H 0.11 0.16 7.61 -2.39 -0.02 0.14 16 43 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 44 H 0.11 0.02 7.23 -2.39 -0.02 0.01 16 45 H 0.09 0.72 8.09 -2.38 -0.02 0.71 16 46 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.08 2.03 7.09 -2.39 -0.02 2.01 16 48 H 0.08 2.19 7.05 -2.39 -0.02 2.17 16 49 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.02 0.91 7.87 -2.39 -0.02 0.89 16 Total: -1.00 -80.56 382.36 1.40 -79.16 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 0.84 Total: 5.56 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 6.26 Total: 6.14 kcal Atomic # 7 Polarization: -113.76 SS G_CDS: -8.21 Total: -121.97 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.05 Total: -18.98 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.77 Total: -4.29 kcal Atomic # 14 Polarization: 52.58 SS G_CDS: 1.80 Total: 54.39 kcal Total: -80.56 1.40 -79.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046063704.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.955 kcal (2) G-P(sol) polarization free energy of solvation -80.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds