Wall clock time and date at job start Sat Apr 11 2020 05:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00060 * 2 1 4 4 H 1.08995 * 109.46792 * 339.06790 * 3 2 1 5 5 C 1.50698 * 109.47017 * 219.06779 * 3 2 1 6 6 O 1.21280 * 120.00040 * 356.18064 * 5 3 2 7 7 N 1.34774 * 120.00042 * 176.18280 * 5 3 2 8 8 C 1.47746 * 121.65403 * 174.65489 * 7 5 3 9 9 C 1.53601 * 108.47830 * 87.80035 * 8 7 5 10 10 C 1.50706 * 109.49479 * 55.02120 * 9 8 7 11 11 O 1.21280 * 120.24216 * 65.68459 * 10 9 8 12 12 N 1.35515 * 119.51541 * 245.65358 * 10 9 8 13 13 C 1.47115 * 118.10465 * 179.97438 * 12 10 9 14 14 C 1.52991 * 109.17395 * 259.44033 * 13 12 10 15 15 N 1.47774 * 108.82263 * 57.75101 * 14 13 12 16 16 C 1.36936 * 121.64433 * 83.02517 * 15 14 13 17 17 H 1.08004 * 120.00152 * 335.13096 * 16 15 14 18 18 C 1.38814 * 119.99843 * 155.12864 * 16 15 14 19 19 N 1.31617 * 120.00019 * 342.83539 * 18 16 15 20 20 Si 1.86796 * 119.99930 * 162.83759 * 18 16 15 21 21 H 1.48502 * 109.47347 * 60.00252 * 20 18 16 22 22 H 1.48506 * 109.47350 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47348 * 300.00147 * 20 18 16 24 24 C 1.47732 * 116.70763 * 263.00522 * 15 14 13 25 25 C 1.47777 * 121.65209 * 354.93594 * 7 5 3 26 26 C 1.52998 * 109.47047 * 99.06659 * 3 2 1 27 27 C 1.53001 * 117.49830 * 3.11594 * 26 3 2 28 28 C 1.53002 * 117.49773 * 294.45918 * 26 3 2 29 29 H 1.08999 * 109.47437 * 184.31590 * 1 2 3 30 30 H 1.09003 * 109.47248 * 304.30923 * 1 2 3 31 31 H 1.08997 * 109.47521 * 64.30729 * 1 2 3 32 32 H 1.09000 * 109.57887 * 207.43361 * 8 7 5 33 33 H 1.09001 * 109.58549 * 327.84147 * 8 7 5 34 34 H 1.08994 * 109.49519 * 294.98032 * 9 8 7 35 35 H 1.08997 * 109.40147 * 174.99761 * 9 8 7 36 36 H 0.97000 * 120.94646 * 359.95197 * 12 10 9 37 37 H 1.08996 * 109.51928 * 139.53118 * 13 12 10 38 38 H 1.08995 * 109.52138 * 19.34745 * 13 12 10 39 39 H 1.08998 * 109.57754 * 297.94832 * 14 13 12 40 40 H 1.09004 * 109.68730 * 177.61682 * 14 13 12 41 41 H 0.97000 * 120.00370 * 179.97438 * 19 18 16 42 42 H 1.09007 * 109.57812 * 14.87894 * 24 15 14 43 43 H 1.09002 * 109.58175 * 254.47588 * 24 15 14 44 44 H 1.09007 * 109.58342 * 69.84174 * 25 7 5 45 45 H 1.08996 * 109.58621 * 190.11926 * 25 7 5 46 46 H 1.08996 * 115.54936 * 148.78272 * 26 3 2 47 47 H 1.09007 * 117.50023 * 0.02562 * 27 26 3 48 48 H 1.08998 * 117.50032 * 145.01896 * 27 26 3 49 49 H 1.09007 * 117.49179 * 214.97466 * 28 26 3 50 50 H 1.08997 * 117.50105 * 359.97190 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2811 2.0277 -0.3671 5 6 3.2223 1.3157 -0.8954 6 8 3.5961 0.2889 -1.4216 7 7 3.8908 2.4658 -1.1116 8 6 5.1482 2.4978 -1.8867 9 6 4.7995 2.6648 -3.3733 10 6 3.9370 3.8874 -3.5533 11 8 4.3860 4.9907 -3.3251 12 7 2.6562 3.7451 -3.9727 13 6 1.8420 4.9593 -4.1374 14 6 0.9282 5.1203 -2.9209 15 7 1.7624 5.1806 -1.7027 16 6 2.3509 6.3468 -1.2919 17 1 2.5639 7.1260 -2.0089 18 6 2.6738 6.5276 0.0460 19 7 2.1289 5.7580 0.9642 20 14 3.8814 7.8631 0.5431 21 1 3.3585 9.1865 0.1183 22 1 4.0554 7.8493 2.0179 23 1 5.1910 7.6151 -0.1116 24 6 1.9296 3.9207 -0.9495 25 6 3.4057 3.7564 -0.5797 26 6 2.4253 1.6789 1.4245 27 6 2.2289 0.6255 2.5166 28 6 1.3140 1.8515 2.4618 29 1 -0.3634 -1.0247 0.0773 30 1 -0.3634 0.5793 0.8489 31 1 -0.3634 0.4455 -0.9260 32 1 5.7589 3.3385 -1.5575 33 1 5.6939 1.5663 -1.7364 34 1 4.2593 1.7844 -3.7213 35 1 5.7174 2.7795 -3.9498 36 1 2.2870 2.8678 -4.1592 37 1 1.2360 4.8718 -5.0391 38 1 2.4955 5.8277 -4.2195 39 1 0.2506 4.2689 -2.8579 40 1 0.3511 6.0403 -3.0144 41 1 2.3548 5.8841 1.8991 42 1 1.6140 3.0806 -1.5682 43 1 1.3272 3.9551 -0.0417 44 1 3.5144 3.7686 0.5049 45 1 3.9847 4.5713 -1.0141 46 1 3.2948 2.3312 1.5050 47 1 1.8043 -0.3337 2.2202 48 1 2.9689 0.5852 3.3159 49 1 1.4526 2.6173 3.2251 50 1 0.2871 1.6995 2.1294 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070959814.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:04 Heat of formation + Delta-G solvation = -30.527365 kcal Electronic energy + Delta-G solvation = -34059.164221 eV Core-core repulsion = 29896.763764 eV Total energy + Delta-G solvation = -4162.400457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.27618 -39.02952 -37.72433 -36.26613 -35.60013 -35.03488 -33.70527 -31.71915 -30.86447 -29.17509 -28.50168 -26.61623 -26.01701 -24.37314 -23.60731 -22.34490 -22.03352 -20.66899 -20.26298 -19.82130 -18.88856 -17.16464 -16.76792 -16.62709 -16.20731 -15.68140 -15.58996 -15.37985 -14.74165 -14.62591 -14.55777 -13.96861 -13.84873 -13.62560 -13.28829 -13.18822 -13.00915 -12.92999 -12.64487 -12.51139 -12.28391 -11.78633 -11.64490 -11.33735 -11.29710 -11.18986 -11.13384 -11.08375 -10.81277 -10.58038 -10.47008 -10.28739 -10.11553 -10.02401 -9.88188 -9.76309 -9.47234 -9.12201 -8.95131 -8.79448 -8.34585 -8.13718 -6.68564 -5.74134 -3.20327 2.97309 3.14156 3.33150 3.40176 3.44888 3.51565 3.86628 4.03688 4.28408 4.49831 4.80236 4.96572 5.14964 5.17357 5.26609 5.32857 5.38599 5.39240 5.42061 5.47736 5.51097 5.59140 5.69551 5.75943 5.82276 5.87931 5.95116 5.97411 6.01259 6.04860 6.12038 6.20256 6.23454 6.24775 6.41548 6.47912 6.50863 6.60660 6.72697 6.84912 7.11145 7.22116 7.29833 7.43599 7.82464 7.96579 8.09774 8.31500 8.61821 8.92872 9.15660 9.77167 10.35294 11.27402 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010075 B = 0.006510 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.547893 B = 4300.307729 C = 5455.840675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.360 6.360 3 C 0.093 3.907 4 H 0.109 0.891 5 C 0.525 3.475 6 O -0.543 6.543 7 N -0.614 5.614 8 C 0.129 3.871 9 C -0.156 4.156 10 C 0.521 3.479 11 O -0.518 6.518 12 N -0.725 5.725 13 C 0.088 3.912 14 C 0.127 3.873 15 N -0.583 5.583 16 C -0.221 4.221 17 H 0.065 0.935 18 C 0.000 4.000 19 N -0.902 5.902 20 Si 0.893 3.107 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.284 1.284 24 C 0.160 3.840 25 C 0.095 3.905 26 C -0.164 4.164 27 C -0.172 4.172 28 C -0.162 4.162 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.391 0.609 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.038 0.962 40 H 0.055 0.945 41 H 0.252 0.748 42 H 0.019 0.981 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.109 0.891 46 H 0.118 0.882 47 H 0.101 0.899 48 H 0.088 0.912 49 H 0.098 0.902 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.257 -8.949 -3.363 9.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.277 6.277 3 C 0.033 3.967 4 H 0.126 0.874 5 C 0.312 3.688 6 O -0.421 6.421 7 N -0.349 5.349 8 C 0.006 3.994 9 C -0.198 4.198 10 C 0.307 3.693 11 O -0.392 6.392 12 N -0.377 5.377 13 C -0.039 4.039 14 C -0.001 4.001 15 N -0.306 5.306 16 C -0.350 4.350 17 H 0.083 0.917 18 C -0.198 4.198 19 N -0.547 5.547 20 Si 0.724 3.276 21 H -0.211 1.211 22 H -0.219 1.219 23 H -0.210 1.210 24 C 0.034 3.966 25 C -0.026 4.026 26 C -0.182 4.182 27 C -0.209 4.209 28 C -0.199 4.199 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.224 0.776 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.037 0.963 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.127 0.873 46 H 0.136 0.864 47 H 0.119 0.881 48 H 0.107 0.893 49 H 0.116 0.884 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.620 -8.822 -3.264 9.544 hybrid contribution 0.327 0.636 0.274 0.766 sum -1.292 -8.186 -2.990 8.810 Atomic orbital electron populations 1.22944 0.81345 1.02601 1.00275 1.87962 1.19090 1.26024 1.94648 1.21845 0.94967 0.86242 0.93692 0.87423 1.20193 0.84529 0.82883 0.81163 1.90631 1.68057 1.32575 1.50805 1.49065 1.24164 1.08685 1.53026 1.21646 0.86392 1.02891 0.88490 1.22214 1.00908 0.97469 0.99215 1.20390 0.82369 0.90380 0.76204 1.90733 1.73014 1.27102 1.48398 1.46069 1.12557 1.09302 1.69810 1.22279 0.94905 0.88697 0.98018 1.21478 0.91965 0.99114 0.87561 1.44417 1.56028 1.05107 1.25078 1.18862 1.31441 0.93799 0.90924 0.91716 1.24835 1.00721 0.98566 0.95657 1.69990 1.43560 1.41334 0.99852 0.86491 0.82192 0.82121 0.76846 1.21108 1.21900 1.21040 1.21599 0.93751 0.85726 0.95494 1.22996 0.98669 0.82068 0.98910 1.22605 1.02513 1.03493 0.89604 1.22935 1.03081 0.94697 1.00164 1.22943 0.95229 1.00026 1.01733 0.89612 0.93562 0.94061 0.89543 0.89903 0.90295 0.88484 0.77581 0.92830 0.89527 0.94326 0.92714 0.93840 0.96264 0.91397 0.91106 0.87317 0.86439 0.88079 0.89345 0.88370 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.70 101.05 1.08 1.39 16 2 O -0.36 -5.87 8.24 -55.11 -0.45 -6.33 16 3 C 0.09 1.58 2.01 -27.88 -0.06 1.52 16 4 H 0.11 1.87 4.06 -51.93 -0.21 1.65 16 5 C 0.52 9.72 6.41 -10.99 -0.07 9.65 16 6 O -0.54 -11.23 16.35 -14.32 -0.23 -11.46 16 7 N -0.61 -10.99 2.39 -171.24 -0.41 -11.40 16 8 C 0.13 2.08 5.70 -3.05 -0.02 2.06 16 9 C -0.16 -2.33 6.20 -27.57 -0.17 -2.50 16 10 C 0.52 9.22 4.75 -10.65 -0.05 9.17 16 11 O -0.52 -11.30 15.08 5.56 0.08 -11.22 16 12 N -0.73 -11.37 4.70 -59.69 -0.28 -11.65 16 13 C 0.09 1.42 6.58 -3.71 -0.02 1.39 16 14 C 0.13 2.30 6.09 -3.35 -0.02 2.28 16 15 N -0.58 -12.77 2.29 -171.17 -0.39 -13.17 16 16 C -0.22 -5.54 8.50 -15.06 -0.13 -5.67 16 17 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 18 C 0.00 0.00 4.13 -17.43 -0.07 -0.07 16 19 N -0.90 -22.98 10.02 55.49 0.56 -22.42 16 20 Si 0.89 21.26 29.59 -169.99 -5.03 16.23 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.16 3.26 2.70 -3.34 -0.01 3.26 16 25 C 0.09 1.93 3.06 -3.31 -0.01 1.92 16 26 C -0.16 -2.67 4.97 -90.62 -0.45 -3.12 16 27 C -0.17 -2.44 9.87 -26.69 -0.26 -2.70 16 28 C -0.16 -2.37 10.04 -26.69 -0.27 -2.63 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.53 5.88 -51.93 -0.31 0.23 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 1.42 7.80 -51.93 -0.41 1.01 16 33 H 0.08 1.25 7.71 -51.93 -0.40 0.85 16 34 H 0.08 1.12 7.94 -51.93 -0.41 0.71 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.39 5.31 8.71 -40.82 -0.36 4.96 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.66 7.01 -51.93 -0.36 1.30 16 39 H 0.04 0.64 7.76 -51.93 -0.40 0.24 16 40 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 41 H 0.25 6.40 8.31 -40.82 -0.34 6.07 16 42 H 0.02 0.37 5.18 -51.93 -0.27 0.10 16 43 H 0.07 1.57 6.37 -51.93 -0.33 1.24 16 44 H 0.07 1.54 5.32 -51.92 -0.28 1.26 16 45 H 0.11 2.57 4.57 -51.93 -0.24 2.33 16 46 H 0.12 2.10 5.89 -51.93 -0.31 1.79 16 47 H 0.10 1.43 7.02 -51.93 -0.36 1.06 16 48 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 50 H 0.09 1.23 6.06 -51.93 -0.31 0.92 16 LS Contribution 372.14 15.07 5.61 5.61 Total: -1.00 -29.96 372.14 -8.54 -38.51 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -7.46 Total: 11.35 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: -0.53 Total: 15.94 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.52 Total: -58.63 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.60 Total: -29.01 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.96 -8.54 -38.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070959814.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.980 kcal (2) G-P(sol) polarization free energy of solvation -29.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds