Wall clock time and date at job start Sat Apr 11 2020 05:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00060 * 2 1 4 4 H 1.08995 * 109.46792 * 339.06790 * 3 2 1 5 5 C 1.50698 * 109.47017 * 219.06779 * 3 2 1 6 6 O 1.21280 * 120.00040 * 356.18064 * 5 3 2 7 7 N 1.34774 * 120.00042 * 176.18280 * 5 3 2 8 8 C 1.47746 * 121.65403 * 174.65489 * 7 5 3 9 9 C 1.53601 * 108.47830 * 87.80035 * 8 7 5 10 10 C 1.50706 * 109.49479 * 55.02120 * 9 8 7 11 11 O 1.21280 * 120.24216 * 65.68459 * 10 9 8 12 12 N 1.35515 * 119.51541 * 245.65358 * 10 9 8 13 13 C 1.47115 * 118.10465 * 179.97438 * 12 10 9 14 14 C 1.52991 * 109.17395 * 259.44033 * 13 12 10 15 15 N 1.47774 * 108.82263 * 57.75101 * 14 13 12 16 16 C 1.36936 * 121.64433 * 83.02517 * 15 14 13 17 17 H 1.08004 * 120.00152 * 335.13096 * 16 15 14 18 18 C 1.38814 * 119.99843 * 155.12864 * 16 15 14 19 19 N 1.31617 * 120.00019 * 342.83539 * 18 16 15 20 20 Si 1.86796 * 119.99930 * 162.83759 * 18 16 15 21 21 H 1.48502 * 109.47347 * 60.00252 * 20 18 16 22 22 H 1.48506 * 109.47350 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47348 * 300.00147 * 20 18 16 24 24 C 1.47732 * 116.70763 * 263.00522 * 15 14 13 25 25 C 1.47777 * 121.65209 * 354.93594 * 7 5 3 26 26 C 1.52998 * 109.47047 * 99.06659 * 3 2 1 27 27 C 1.53001 * 117.49830 * 3.11594 * 26 3 2 28 28 C 1.53002 * 117.49773 * 294.45918 * 26 3 2 29 29 H 1.08999 * 109.47437 * 184.31590 * 1 2 3 30 30 H 1.09003 * 109.47248 * 304.30923 * 1 2 3 31 31 H 1.08997 * 109.47521 * 64.30729 * 1 2 3 32 32 H 1.09000 * 109.57887 * 207.43361 * 8 7 5 33 33 H 1.09001 * 109.58549 * 327.84147 * 8 7 5 34 34 H 1.08994 * 109.49519 * 294.98032 * 9 8 7 35 35 H 1.08997 * 109.40147 * 174.99761 * 9 8 7 36 36 H 0.97000 * 120.94646 * 359.95197 * 12 10 9 37 37 H 1.08996 * 109.51928 * 139.53118 * 13 12 10 38 38 H 1.08995 * 109.52138 * 19.34745 * 13 12 10 39 39 H 1.08998 * 109.57754 * 297.94832 * 14 13 12 40 40 H 1.09004 * 109.68730 * 177.61682 * 14 13 12 41 41 H 0.97000 * 120.00370 * 179.97438 * 19 18 16 42 42 H 1.09007 * 109.57812 * 14.87894 * 24 15 14 43 43 H 1.09002 * 109.58175 * 254.47588 * 24 15 14 44 44 H 1.09007 * 109.58342 * 69.84174 * 25 7 5 45 45 H 1.08996 * 109.58621 * 190.11926 * 25 7 5 46 46 H 1.08996 * 115.54936 * 148.78272 * 26 3 2 47 47 H 1.09007 * 117.50023 * 0.02562 * 27 26 3 48 48 H 1.08998 * 117.50032 * 145.01896 * 27 26 3 49 49 H 1.09007 * 117.49179 * 214.97466 * 28 26 3 50 50 H 1.08997 * 117.50105 * 359.97190 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2811 2.0277 -0.3671 5 6 3.2223 1.3157 -0.8954 6 8 3.5961 0.2889 -1.4216 7 7 3.8908 2.4658 -1.1116 8 6 5.1482 2.4978 -1.8867 9 6 4.7995 2.6648 -3.3733 10 6 3.9370 3.8874 -3.5533 11 8 4.3860 4.9907 -3.3251 12 7 2.6562 3.7451 -3.9727 13 6 1.8420 4.9593 -4.1374 14 6 0.9282 5.1203 -2.9209 15 7 1.7624 5.1806 -1.7027 16 6 2.3509 6.3468 -1.2919 17 1 2.5639 7.1260 -2.0089 18 6 2.6738 6.5276 0.0460 19 7 2.1289 5.7580 0.9642 20 14 3.8814 7.8631 0.5431 21 1 3.3585 9.1865 0.1183 22 1 4.0554 7.8493 2.0179 23 1 5.1910 7.6151 -0.1116 24 6 1.9296 3.9207 -0.9495 25 6 3.4057 3.7564 -0.5797 26 6 2.4253 1.6789 1.4245 27 6 2.2289 0.6255 2.5166 28 6 1.3140 1.8515 2.4618 29 1 -0.3634 -1.0247 0.0773 30 1 -0.3634 0.5793 0.8489 31 1 -0.3634 0.4455 -0.9260 32 1 5.7589 3.3385 -1.5575 33 1 5.6939 1.5663 -1.7364 34 1 4.2593 1.7844 -3.7213 35 1 5.7174 2.7795 -3.9498 36 1 2.2870 2.8678 -4.1592 37 1 1.2360 4.8718 -5.0391 38 1 2.4955 5.8277 -4.2195 39 1 0.2506 4.2689 -2.8579 40 1 0.3511 6.0403 -3.0144 41 1 2.3548 5.8841 1.8991 42 1 1.6140 3.0806 -1.5682 43 1 1.3272 3.9551 -0.0417 44 1 3.5144 3.7686 0.5049 45 1 3.9847 4.5713 -1.0141 46 1 3.2948 2.3312 1.5050 47 1 1.8043 -0.3337 2.2202 48 1 2.9689 0.5852 3.3159 49 1 1.4526 2.6173 3.2251 50 1 0.2871 1.6995 2.1294 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070959814.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:03 Heat of formation + Delta-G solvation = -49.177167 kcal Electronic energy + Delta-G solvation = -34059.972938 eV Core-core repulsion = 29896.763764 eV Total energy + Delta-G solvation = -4163.209173 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.69428 -40.40909 -39.06019 -37.90804 -36.90650 -36.39611 -35.24916 -33.34876 -32.42748 -30.68562 -29.78757 -28.30185 -27.13527 -26.01377 -25.02493 -23.82557 -23.18211 -22.10302 -21.76849 -21.23103 -20.28924 -18.79518 -18.14573 -18.10580 -17.53024 -17.07350 -17.02777 -16.75929 -16.42803 -16.13211 -15.90425 -15.39340 -15.33772 -15.04479 -14.90460 -14.63069 -14.36435 -14.19997 -14.00116 -13.92818 -13.71316 -13.20835 -13.10700 -12.99951 -12.74992 -12.73448 -12.50885 -12.37060 -12.30652 -12.24475 -11.97362 -11.82115 -11.75512 -11.62513 -11.49433 -11.10832 -10.74604 -10.64165 -10.54720 -10.29221 -9.90235 -9.64094 -8.49676 -7.67608 -5.13632 1.44850 1.48808 1.52201 1.55600 1.76642 1.94692 2.54972 2.60462 2.78865 3.09229 3.39181 3.42718 3.70015 3.77326 3.90160 3.96959 4.03378 4.16460 4.22892 4.29348 4.39408 4.43115 4.48772 4.51878 4.58029 4.60360 4.62243 4.68112 4.73064 4.77303 4.78470 4.82494 4.87488 4.94759 5.06371 5.07198 5.18756 5.28033 5.31152 5.34174 5.63604 5.69924 5.76679 5.81755 6.07447 6.37583 6.51186 6.81134 7.14667 7.26381 7.58935 7.91991 8.46898 9.29105 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010075 B = 0.006510 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.547893 B = 4300.307729 C = 5455.840675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.376 6.376 3 C 0.103 3.897 4 H 0.102 0.898 5 C 0.525 3.475 6 O -0.563 6.563 7 N -0.610 5.610 8 C 0.124 3.876 9 C -0.146 4.146 10 C 0.516 3.484 11 O -0.564 6.564 12 N -0.715 5.715 13 C 0.097 3.903 14 C 0.121 3.879 15 N -0.596 5.596 16 C -0.215 4.215 17 H 0.045 0.955 18 C -0.031 4.031 19 N -0.908 5.908 20 Si 0.928 3.072 21 H -0.286 1.286 22 H -0.293 1.293 23 H -0.298 1.298 24 C 0.177 3.823 25 C 0.119 3.881 26 C -0.185 4.185 27 C -0.155 4.155 28 C -0.155 4.155 29 H 0.109 0.891 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.406 0.594 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.246 0.754 42 H 0.035 0.965 43 H 0.046 0.954 44 H 0.054 0.946 45 H 0.078 0.922 46 H 0.096 0.904 47 H 0.106 0.894 48 H 0.099 0.901 49 H 0.094 0.906 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.306 -10.776 -4.140 12.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.294 6.294 3 C 0.042 3.958 4 H 0.119 0.881 5 C 0.313 3.687 6 O -0.442 6.442 7 N -0.345 5.345 8 C 0.001 3.999 9 C -0.187 4.187 10 C 0.303 3.697 11 O -0.442 6.442 12 N -0.368 5.368 13 C -0.029 4.029 14 C -0.005 4.005 15 N -0.319 5.319 16 C -0.346 4.346 17 H 0.063 0.937 18 C -0.227 4.227 19 N -0.555 5.555 20 Si 0.760 3.240 21 H -0.212 1.212 22 H -0.219 1.219 23 H -0.226 1.226 24 C 0.052 3.948 25 C -0.003 4.003 26 C -0.204 4.204 27 C -0.191 4.191 28 C -0.192 4.192 29 H 0.128 0.872 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.139 0.861 36 H 0.241 0.759 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.114 0.886 47 H 0.124 0.876 48 H 0.117 0.883 49 H 0.112 0.888 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.702 -10.676 -4.072 11.741 hybrid contribution 0.627 1.179 0.456 1.411 sum -2.075 -9.496 -3.615 10.371 Atomic orbital electron populations 1.23194 0.79288 1.04435 1.00925 1.87939 1.21320 1.25382 1.94715 1.21641 0.94052 0.86613 0.93458 0.88059 1.20500 0.84871 0.82401 0.80937 1.90614 1.68857 1.33005 1.51717 1.48997 1.24665 1.07811 1.53001 1.21785 0.85687 1.03255 0.89143 1.22173 1.01675 0.96442 0.98459 1.20877 0.83025 0.90484 0.75308 1.90724 1.74011 1.29040 1.50442 1.46018 1.11988 1.09947 1.68798 1.22106 0.94217 0.87830 0.98774 1.21686 0.92202 0.99992 0.86662 1.44551 1.56397 1.04601 1.26324 1.18758 1.31034 0.94391 0.90428 0.93692 1.25115 1.01849 0.99832 0.95945 1.70052 1.44115 1.41848 0.99470 0.85946 0.80675 0.81154 0.76255 1.21229 1.21938 1.22562 1.21363 0.93270 0.85558 0.94625 1.22500 0.98139 0.82100 0.97598 1.22516 1.02814 1.04892 0.90147 1.22975 1.02727 0.94365 0.99071 1.22962 0.95418 1.00155 1.00645 0.87238 0.92823 0.93496 0.90376 0.88516 0.88973 0.86076 0.75882 0.88521 0.92700 0.92117 0.92976 0.94383 0.94729 0.93658 0.92751 0.90371 0.88553 0.87559 0.88271 0.88796 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.70 113.37 1.21 1.60 16 2 O -0.38 -11.50 8.24 -129.97 -1.07 -12.57 16 3 C 0.10 3.37 2.01 29.85 0.06 3.43 16 4 H 0.10 3.39 4.06 -2.39 -0.01 3.38 16 5 C 0.52 18.84 6.41 87.66 0.56 19.40 16 6 O -0.56 -22.33 16.35 15.98 0.26 -22.07 16 7 N -0.61 -21.54 2.39 -814.07 -1.94 -23.49 16 8 C 0.12 3.89 5.70 86.34 0.49 4.38 16 9 C -0.15 -4.09 6.20 30.05 0.19 -3.90 16 10 C 0.52 17.74 4.75 87.54 0.42 18.15 16 11 O -0.56 -24.84 15.08 -3.03 -0.05 -24.89 16 12 N -0.72 -20.97 4.70 -460.72 -2.16 -23.14 16 13 C 0.10 2.97 6.58 86.26 0.57 3.53 16 14 C 0.12 4.22 6.09 86.13 0.52 4.74 16 15 N -0.60 -25.98 2.29 -695.47 -1.59 -27.57 16 16 C -0.22 -10.99 8.50 84.03 0.71 -10.28 16 17 H 0.05 2.45 7.89 -2.91 -0.02 2.43 16 18 C -0.03 -1.61 4.13 84.86 0.35 -1.26 16 19 N -0.91 -46.92 10.02 21.65 0.22 -46.70 16 20 Si 0.93 44.60 29.59 68.60 2.03 46.63 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 22 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 23 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 24 C 0.18 7.19 2.70 86.16 0.23 7.42 16 25 C 0.12 4.90 3.06 86.15 0.26 5.16 16 26 C -0.18 -5.93 4.97 -10.79 -0.05 -5.98 16 27 C -0.15 -4.13 9.87 30.62 0.30 -3.83 16 28 C -0.16 -4.33 10.04 30.62 0.31 -4.03 16 29 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 1.10 5.88 -2.39 -0.01 1.08 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 2.58 7.80 -2.39 -0.02 2.56 16 33 H 0.10 2.78 7.71 -2.39 -0.02 2.76 16 34 H 0.09 2.35 7.94 -2.39 -0.02 2.33 16 35 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.41 9.74 8.71 -92.71 -0.81 8.94 16 37 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.05 2.08 7.01 -2.39 -0.02 2.06 16 39 H 0.06 1.85 7.76 -2.39 -0.02 1.83 16 40 H 0.05 1.84 8.13 -2.38 -0.02 1.82 16 41 H 0.25 12.74 8.31 -92.71 -0.77 11.97 16 42 H 0.03 1.29 5.18 -2.38 -0.01 1.27 16 43 H 0.05 2.09 6.37 -2.39 -0.02 2.08 16 44 H 0.05 2.43 5.32 -2.38 -0.01 2.42 16 45 H 0.08 3.79 4.57 -2.39 -0.01 3.78 16 46 H 0.10 3.51 5.89 -2.39 -0.01 3.49 16 47 H 0.11 2.76 7.02 -2.38 -0.02 2.74 16 48 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.09 2.70 8.14 -2.38 -0.02 2.69 16 50 H 0.10 2.58 6.06 -2.39 -0.01 2.56 16 Total: -1.00 -65.30 372.14 2.00 -63.30 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: 0.17 Total: 31.95 kcal Atomic # 6 Polarization: 32.41 SS G_CDS: 6.14 Total: 38.54 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -5.48 Total: -120.90 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: -0.86 Total: -59.52 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -65.30 2.00 -63.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070959814.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.118 kcal (2) G-P(sol) polarization free energy of solvation -65.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds