Wall clock time and date at job start Sat Apr 11 2020 05:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00177 * 2 1 4 4 H 1.09001 * 109.46567 * 21.71754 * 3 2 1 5 5 C 1.50696 * 109.46783 * 141.71641 * 3 2 1 6 6 O 1.21273 * 120.00617 * 7.42156 * 5 3 2 7 7 N 1.34785 * 119.99561 * 187.41120 * 5 3 2 8 8 C 1.47739 * 121.65203 * 4.21202 * 7 5 3 9 9 C 1.53603 * 108.48102 * 87.79697 * 8 7 5 10 10 C 1.50703 * 109.49251 * 55.02021 * 9 8 7 11 11 O 1.21274 * 120.24440 * 65.68639 * 10 9 8 12 12 N 1.35517 * 119.51830 * 245.65476 * 10 9 8 13 13 C 1.47108 * 118.10871 * 179.97438 * 12 10 9 14 14 C 1.52985 * 109.17403 * 259.43894 * 13 12 10 15 15 N 1.47768 * 108.82216 * 57.75125 * 14 13 12 16 16 C 1.36938 * 121.64555 * 83.02568 * 15 14 13 17 17 H 1.08003 * 120.00283 * 328.90426 * 16 15 14 18 18 C 1.38815 * 120.00153 * 148.89817 * 16 15 14 19 19 N 1.31624 * 120.00036 * 349.52988 * 18 16 15 20 20 Si 1.86803 * 120.00211 * 169.52025 * 18 16 15 21 21 H 1.48495 * 109.46952 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46725 * 120.00442 * 20 18 16 23 23 H 1.48502 * 109.46961 * 240.00558 * 20 18 16 24 24 C 1.47733 * 116.70931 * 263.00514 * 15 14 13 25 25 C 1.47765 * 121.65082 * 184.48902 * 7 5 3 26 26 C 1.52994 * 109.46874 * 261.72051 * 3 2 1 27 27 C 1.52997 * 117.50483 * 14.69579 * 26 3 2 28 28 C 1.52998 * 60.00422 * 252.51137 * 27 26 3 29 29 H 1.08998 * 109.47086 * 54.53807 * 1 2 3 30 30 H 1.09000 * 109.47009 * 174.53597 * 1 2 3 31 31 H 1.08993 * 109.47135 * 294.53849 * 1 2 3 32 32 H 1.09002 * 109.58325 * 207.42864 * 8 7 5 33 33 H 1.09001 * 109.58391 * 327.84087 * 8 7 5 34 34 H 1.08994 * 109.49575 * 294.97988 * 9 8 7 35 35 H 1.09001 * 109.40531 * 175.00063 * 9 8 7 36 36 H 0.97006 * 120.94397 * 359.95402 * 12 10 9 37 37 H 1.08997 * 109.51987 * 139.53238 * 13 12 10 38 38 H 1.08993 * 109.51944 * 19.35091 * 13 12 10 39 39 H 1.09000 * 109.58034 * 297.95047 * 14 13 12 40 40 H 1.09008 * 109.68624 * 177.61593 * 14 13 12 41 41 H 0.96994 * 119.99817 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.58057 * 14.87141 * 24 15 14 43 43 H 1.09005 * 109.58491 * 254.47626 * 24 15 14 44 44 H 1.09003 * 109.58500 * 69.84631 * 25 7 5 45 45 H 1.08997 * 109.58510 * 190.12542 * 25 7 5 46 46 H 1.09008 * 115.54812 * 160.40691 * 26 3 2 47 47 H 1.09006 * 117.49805 * 0.02562 * 27 26 3 48 48 H 1.09002 * 117.50019 * 145.01814 * 27 26 3 49 49 H 1.08997 * 117.49696 * 252.50829 * 28 27 26 50 50 H 1.08994 * 117.49991 * 107.48192 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2858 2.0257 0.3803 5 6 3.2334 1.3106 0.8803 6 8 3.6519 0.2707 1.3431 7 7 3.8624 2.4711 1.1531 8 6 3.3331 3.7685 0.6849 9 6 2.3450 4.2987 1.7347 10 6 3.0250 4.3628 3.0781 11 8 3.9461 5.1303 3.2605 12 7 2.5994 3.5568 4.0810 13 6 3.2857 3.6446 5.3793 14 6 4.2761 2.4852 5.5034 15 7 5.2278 2.5482 4.3748 16 6 6.3282 3.3626 4.4074 17 1 6.2945 4.2943 4.9528 18 6 7.4870 2.9908 3.7397 19 7 7.6035 1.7741 3.2513 20 14 8.8810 4.2171 3.5342 21 1 8.5043 5.5056 4.1690 22 1 10.1069 3.6861 4.1825 23 1 9.1401 4.4342 2.0882 24 6 4.9338 1.6889 3.2096 25 6 5.1188 2.5081 1.9300 26 6 2.4075 1.6868 -1.4274 27 6 1.8338 0.8453 -2.5692 28 6 3.3111 0.7174 -2.1922 29 1 -0.3633 0.5962 -0.8370 30 1 -0.3633 -1.0230 -0.0979 31 1 -0.3633 0.4268 0.9348 32 1 4.1536 4.4759 0.5647 33 1 2.8228 3.6323 -0.2686 34 1 1.4849 3.6319 1.7942 35 1 2.0124 5.2962 1.4478 36 1 1.8630 2.9399 3.9467 37 1 2.5525 3.5849 6.1835 38 1 3.8226 4.5908 5.4441 39 1 3.7362 1.5388 5.4736 40 1 4.8199 2.5660 6.4447 41 1 8.4130 1.5144 2.7844 42 1 3.9051 1.3332 3.2683 43 1 5.6162 0.8388 3.2011 44 1 5.9279 2.0818 1.3369 45 1 5.3588 3.5396 2.1876 46 1 2.5461 2.7529 -1.6079 47 1 1.1730 0.0201 -2.3034 48 1 1.5946 1.3576 -3.5011 49 1 4.0439 1.1457 -2.8761 50 1 3.6225 -0.1919 -1.6783 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070959815.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:07 Heat of formation + Delta-G solvation = -34.600393 kcal Electronic energy + Delta-G solvation = -33466.573530 eV Core-core repulsion = 29303.996453 eV Total energy + Delta-G solvation = -4162.577077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.31449 -39.09911 -37.79702 -36.01788 -35.79030 -35.24186 -33.72326 -31.31834 -30.42162 -29.89091 -28.42324 -26.64170 -25.90226 -24.49084 -23.64276 -22.47056 -22.15664 -20.92269 -20.17325 -19.76306 -18.73501 -17.26035 -16.96154 -16.50207 -16.35707 -16.18474 -15.55873 -15.14389 -14.86318 -14.70760 -14.43506 -14.12216 -13.94217 -13.61819 -13.32199 -13.23899 -13.05510 -12.99740 -12.69171 -12.44227 -12.18713 -11.76570 -11.69682 -11.53806 -11.46393 -11.31396 -11.18933 -11.06681 -10.78346 -10.61415 -10.43928 -10.42200 -10.18028 -9.92933 -9.89661 -9.75096 -9.61879 -9.13982 -8.85458 -8.67646 -8.27733 -8.02087 -6.42802 -5.53235 -3.10254 2.98631 3.11294 3.28132 3.45723 3.53768 3.58031 3.65901 3.84674 3.98893 4.49700 4.61796 4.69238 4.73074 4.86968 5.04902 5.08300 5.11000 5.20572 5.22880 5.31874 5.35305 5.49589 5.50910 5.56269 5.58775 5.60034 5.68315 5.81106 5.88153 6.03741 6.06731 6.17061 6.20148 6.25167 6.52723 6.63088 6.65739 6.81390 6.96172 7.00589 7.08541 7.16558 7.57333 7.84094 8.00687 8.09904 8.16732 8.54280 8.72602 8.91777 9.36492 9.95676 10.58994 11.45102 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013231 B = 0.004820 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.713540 B = 5807.674755 C = 6529.535870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.354 6.354 3 C 0.102 3.898 4 H 0.083 0.917 5 C 0.515 3.485 6 O -0.509 6.509 7 N -0.612 5.612 8 C 0.108 3.892 9 C -0.160 4.160 10 C 0.521 3.479 11 O -0.516 6.516 12 N -0.722 5.722 13 C 0.089 3.911 14 C 0.126 3.874 15 N -0.588 5.588 16 C -0.224 4.224 17 H 0.062 0.938 18 C 0.002 3.998 19 N -0.900 5.900 20 Si 0.894 3.106 21 H -0.278 1.278 22 H -0.293 1.293 23 H -0.292 1.292 24 C 0.173 3.827 25 C 0.117 3.883 26 C -0.185 4.185 27 C -0.168 4.168 28 C -0.161 4.161 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.390 0.610 37 H 0.052 0.948 38 H 0.085 0.915 39 H 0.038 0.962 40 H 0.051 0.949 41 H 0.250 0.750 42 H 0.028 0.972 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.102 0.898 46 H 0.118 0.882 47 H 0.100 0.900 48 H 0.092 0.908 49 H 0.093 0.907 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.972 1.775 -8.765 20.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.271 6.271 3 C 0.040 3.960 4 H 0.100 0.900 5 C 0.301 3.699 6 O -0.383 6.383 7 N -0.348 5.348 8 C -0.016 4.016 9 C -0.202 4.202 10 C 0.306 3.694 11 O -0.391 6.391 12 N -0.374 5.374 13 C -0.038 4.038 14 C -0.002 4.002 15 N -0.311 5.311 16 C -0.354 4.354 17 H 0.080 0.920 18 C -0.197 4.197 19 N -0.545 5.545 20 Si 0.725 3.275 21 H -0.203 1.203 22 H -0.220 1.220 23 H -0.219 1.219 24 C 0.048 3.952 25 C -0.003 4.003 26 C -0.203 4.203 27 C -0.205 4.205 28 C -0.198 4.198 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.222 0.778 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.120 0.880 46 H 0.136 0.864 47 H 0.119 0.881 48 H 0.110 0.890 49 H 0.112 0.888 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.774 1.489 -8.446 18.839 hybrid contribution 0.181 0.680 -0.376 0.798 sum -16.593 2.169 -8.821 18.917 Atomic orbital electron populations 1.22906 0.81178 1.02946 0.99987 1.88047 1.19175 1.25279 1.94578 1.21481 0.94784 0.86277 0.93460 0.89963 1.20005 0.84711 0.83890 0.81338 1.90745 1.65337 1.31236 1.50987 1.49042 1.26835 1.04454 1.54454 1.22027 0.97777 0.86410 0.95375 1.22329 0.99299 1.03274 0.95283 1.20229 0.83389 0.80558 0.85241 1.90741 1.27505 1.38769 1.82069 1.46021 1.36666 1.41619 1.13053 1.22307 0.95377 1.03327 0.82765 1.21445 0.91535 0.94614 0.92586 1.44503 1.24632 1.49539 1.12388 1.18929 0.88230 0.98064 1.30194 0.91997 1.25129 0.96840 0.95573 1.02125 1.70016 1.26855 1.16416 1.41183 0.86318 0.82701 0.81123 0.77366 1.20298 1.21979 1.21884 1.21221 0.96093 0.93542 0.84348 1.22663 0.80883 1.04219 0.92557 1.22785 1.07797 0.97918 0.91806 1.22935 0.97557 1.02471 0.97488 1.22893 0.92961 1.01461 1.02467 0.93771 0.89381 0.93996 0.89022 0.89917 0.91071 0.88160 0.77771 0.92944 0.89642 0.94310 0.93044 0.93997 0.95403 0.91874 0.92445 0.87952 0.86393 0.88118 0.88973 0.88816 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.97 101.05 1.01 1.25 16 2 O -0.35 -4.88 8.60 -55.03 -0.47 -5.35 16 3 C 0.10 1.32 2.19 -27.89 -0.06 1.26 16 4 H 0.08 0.85 6.49 -51.93 -0.34 0.51 16 5 C 0.52 9.14 6.31 -10.98 -0.07 9.07 16 6 O -0.51 -11.52 14.67 -14.24 -0.21 -11.73 16 7 N -0.61 -10.73 2.42 -171.25 -0.41 -11.15 16 8 C 0.11 1.45 5.37 -3.05 -0.02 1.43 16 9 C -0.16 -1.95 6.17 -27.57 -0.17 -2.12 16 10 C 0.52 8.84 4.75 -10.65 -0.05 8.79 16 11 O -0.52 -11.16 15.08 5.56 0.08 -11.07 16 12 N -0.72 -11.34 4.70 -59.70 -0.28 -11.62 16 13 C 0.09 1.52 6.58 -3.72 -0.02 1.50 16 14 C 0.13 2.58 6.09 -3.35 -0.02 2.56 16 15 N -0.59 -14.48 2.26 -171.18 -0.39 -14.87 16 16 C -0.22 -6.13 8.33 -15.06 -0.13 -6.25 16 17 H 0.06 1.76 7.85 -52.48 -0.41 1.35 16 18 C 0.00 0.04 4.51 -17.43 -0.08 -0.03 16 19 N -0.90 -26.38 10.22 55.49 0.57 -25.81 16 20 Si 0.89 22.54 29.57 -169.99 -5.03 17.52 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 C 0.17 4.26 3.59 -3.34 -0.01 4.25 16 25 C 0.12 2.69 3.92 -3.32 -0.01 2.67 16 26 C -0.18 -2.05 5.07 -90.62 -0.46 -2.51 16 27 C -0.17 -1.63 9.61 -26.73 -0.26 -1.89 16 28 C -0.16 -1.97 9.88 -26.73 -0.26 -2.23 16 29 H 0.04 0.32 7.55 -51.93 -0.39 -0.07 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 1.34 7.80 -51.93 -0.41 0.94 16 33 H 0.08 0.82 4.45 -51.93 -0.23 0.59 16 34 H 0.07 0.69 7.01 -51.93 -0.36 0.33 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.39 5.12 8.71 -40.82 -0.36 4.76 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 1.71 7.01 -51.93 -0.36 1.34 16 39 H 0.04 0.76 7.76 -51.93 -0.40 0.36 16 40 H 0.05 1.06 8.13 -51.92 -0.42 0.63 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.03 0.66 5.78 -51.93 -0.30 0.36 16 43 H 0.06 1.87 6.69 -51.93 -0.35 1.52 16 44 H 0.06 1.49 7.71 -51.93 -0.40 1.09 16 45 H 0.10 2.57 4.71 -51.93 -0.24 2.33 16 46 H 0.12 1.10 6.02 -51.92 -0.31 0.78 16 47 H 0.10 1.00 6.20 -51.93 -0.32 0.68 16 48 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 376.35 15.07 5.67 5.67 Total: -1.00 -35.01 376.35 -8.79 -43.80 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -7.71 Total: 6.87 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: -0.61 Total: 17.74 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.52 Total: -63.45 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.60 Total: -28.15 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.52 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.01 -8.79 -43.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070959815.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.196 kcal (2) G-P(sol) polarization free energy of solvation -35.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds