Wall clock time and date at job start Sat Apr 11 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00177 * 2 1 4 4 H 1.09001 * 109.46567 * 21.71754 * 3 2 1 5 5 C 1.50696 * 109.46783 * 141.71641 * 3 2 1 6 6 O 1.21273 * 120.00617 * 7.42156 * 5 3 2 7 7 N 1.34785 * 119.99561 * 187.41120 * 5 3 2 8 8 C 1.47739 * 121.65203 * 4.21202 * 7 5 3 9 9 C 1.53603 * 108.48102 * 87.79697 * 8 7 5 10 10 C 1.50703 * 109.49251 * 55.02021 * 9 8 7 11 11 O 1.21274 * 120.24440 * 65.68639 * 10 9 8 12 12 N 1.35517 * 119.51830 * 245.65476 * 10 9 8 13 13 C 1.47108 * 118.10871 * 179.97438 * 12 10 9 14 14 C 1.52985 * 109.17403 * 259.43894 * 13 12 10 15 15 N 1.47768 * 108.82216 * 57.75125 * 14 13 12 16 16 C 1.36938 * 121.64555 * 83.02568 * 15 14 13 17 17 H 1.08003 * 120.00283 * 328.90426 * 16 15 14 18 18 C 1.38815 * 120.00153 * 148.89817 * 16 15 14 19 19 N 1.31624 * 120.00036 * 349.52988 * 18 16 15 20 20 Si 1.86803 * 120.00211 * 169.52025 * 18 16 15 21 21 H 1.48495 * 109.46952 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46725 * 120.00442 * 20 18 16 23 23 H 1.48502 * 109.46961 * 240.00558 * 20 18 16 24 24 C 1.47733 * 116.70931 * 263.00514 * 15 14 13 25 25 C 1.47765 * 121.65082 * 184.48902 * 7 5 3 26 26 C 1.52994 * 109.46874 * 261.72051 * 3 2 1 27 27 C 1.52997 * 117.50483 * 14.69579 * 26 3 2 28 28 C 1.52998 * 60.00422 * 252.51137 * 27 26 3 29 29 H 1.08998 * 109.47086 * 54.53807 * 1 2 3 30 30 H 1.09000 * 109.47009 * 174.53597 * 1 2 3 31 31 H 1.08993 * 109.47135 * 294.53849 * 1 2 3 32 32 H 1.09002 * 109.58325 * 207.42864 * 8 7 5 33 33 H 1.09001 * 109.58391 * 327.84087 * 8 7 5 34 34 H 1.08994 * 109.49575 * 294.97988 * 9 8 7 35 35 H 1.09001 * 109.40531 * 175.00063 * 9 8 7 36 36 H 0.97006 * 120.94397 * 359.95402 * 12 10 9 37 37 H 1.08997 * 109.51987 * 139.53238 * 13 12 10 38 38 H 1.08993 * 109.51944 * 19.35091 * 13 12 10 39 39 H 1.09000 * 109.58034 * 297.95047 * 14 13 12 40 40 H 1.09008 * 109.68624 * 177.61593 * 14 13 12 41 41 H 0.96994 * 119.99817 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.58057 * 14.87141 * 24 15 14 43 43 H 1.09005 * 109.58491 * 254.47626 * 24 15 14 44 44 H 1.09003 * 109.58500 * 69.84631 * 25 7 5 45 45 H 1.08997 * 109.58510 * 190.12542 * 25 7 5 46 46 H 1.09008 * 115.54812 * 160.40691 * 26 3 2 47 47 H 1.09006 * 117.49805 * 0.02562 * 27 26 3 48 48 H 1.09002 * 117.50019 * 145.01814 * 27 26 3 49 49 H 1.08997 * 117.49696 * 252.50829 * 28 27 26 50 50 H 1.08994 * 117.49991 * 107.48192 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2858 2.0257 0.3803 5 6 3.2334 1.3106 0.8803 6 8 3.6519 0.2707 1.3431 7 7 3.8624 2.4711 1.1531 8 6 3.3331 3.7685 0.6849 9 6 2.3450 4.2987 1.7347 10 6 3.0250 4.3628 3.0781 11 8 3.9461 5.1303 3.2605 12 7 2.5994 3.5568 4.0810 13 6 3.2857 3.6446 5.3793 14 6 4.2761 2.4852 5.5034 15 7 5.2278 2.5482 4.3748 16 6 6.3282 3.3626 4.4074 17 1 6.2945 4.2943 4.9528 18 6 7.4870 2.9908 3.7397 19 7 7.6035 1.7741 3.2513 20 14 8.8810 4.2171 3.5342 21 1 8.5043 5.5056 4.1690 22 1 10.1069 3.6861 4.1825 23 1 9.1401 4.4342 2.0882 24 6 4.9338 1.6889 3.2096 25 6 5.1188 2.5081 1.9300 26 6 2.4075 1.6868 -1.4274 27 6 1.8338 0.8453 -2.5692 28 6 3.3111 0.7174 -2.1922 29 1 -0.3633 0.5962 -0.8370 30 1 -0.3633 -1.0230 -0.0979 31 1 -0.3633 0.4268 0.9348 32 1 4.1536 4.4759 0.5647 33 1 2.8228 3.6323 -0.2686 34 1 1.4849 3.6319 1.7942 35 1 2.0124 5.2962 1.4478 36 1 1.8630 2.9399 3.9467 37 1 2.5525 3.5849 6.1835 38 1 3.8226 4.5908 5.4441 39 1 3.7362 1.5388 5.4736 40 1 4.8199 2.5660 6.4447 41 1 8.4130 1.5144 2.7844 42 1 3.9051 1.3332 3.2683 43 1 5.6162 0.8388 3.2011 44 1 5.9279 2.0818 1.3369 45 1 5.3588 3.5396 2.1876 46 1 2.5461 2.7529 -1.6079 47 1 1.1730 0.0201 -2.3034 48 1 1.5946 1.3576 -3.5011 49 1 4.0439 1.1457 -2.8761 50 1 3.6225 -0.1919 -1.6783 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070959815.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:06 Heat of formation + Delta-G solvation = -60.044120 kcal Electronic energy + Delta-G solvation = -33467.676852 eV Core-core repulsion = 29303.996453 eV Total energy + Delta-G solvation = -4163.680400 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.59142 -40.36960 -39.03203 -37.60558 -37.03725 -36.52182 -35.29931 -33.20492 -31.90914 -31.30393 -29.71705 -28.18642 -27.03398 -26.04400 -25.10919 -23.81331 -23.21090 -22.07379 -21.88050 -21.14042 -20.06037 -18.63451 -18.21949 -18.03758 -17.56844 -17.40657 -16.98617 -16.59346 -16.41487 -16.12583 -15.57984 -15.54847 -15.32114 -15.06775 -14.95258 -14.62873 -14.44298 -14.26781 -13.99260 -13.70304 -13.61040 -13.24520 -13.13838 -12.99769 -12.81525 -12.58283 -12.47159 -12.30768 -12.27589 -12.16856 -12.03834 -11.86468 -11.79077 -11.63149 -11.47220 -11.24952 -10.75978 -10.70107 -10.50593 -10.20774 -9.87636 -9.57624 -8.49360 -7.68642 -5.28493 1.39987 1.42832 1.53296 1.66000 1.83698 1.99894 2.52017 2.64421 2.79140 2.97438 3.37478 3.56157 3.66461 3.70601 3.83323 3.93470 4.01412 4.19411 4.26335 4.29356 4.38569 4.44017 4.53079 4.57832 4.60290 4.63610 4.69043 4.72940 4.74563 4.82359 4.84500 4.85593 4.92124 4.98880 5.02840 5.06810 5.21128 5.23047 5.30253 5.32637 5.66908 5.76266 5.80101 5.86932 6.16344 6.41176 6.64563 6.87227 7.20865 7.32590 7.65744 7.88730 8.47911 9.25925 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013231 B = 0.004820 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.713540 B = 5807.674755 C = 6529.535870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.388 6.388 3 C 0.112 3.888 4 H 0.124 0.876 5 C 0.510 3.490 6 O -0.570 6.570 7 N -0.610 5.610 8 C 0.104 3.896 9 C -0.151 4.151 10 C 0.509 3.491 11 O -0.569 6.569 12 N -0.716 5.716 13 C 0.103 3.897 14 C 0.119 3.881 15 N -0.600 5.600 16 C -0.214 4.214 17 H 0.051 0.949 18 C -0.046 4.046 19 N -0.928 5.928 20 Si 0.947 3.053 21 H -0.273 1.273 22 H -0.293 1.293 23 H -0.294 1.294 24 C 0.197 3.803 25 C 0.144 3.856 26 C -0.184 4.184 27 C -0.136 4.136 28 C -0.192 4.192 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.135 0.865 36 H 0.406 0.594 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.242 0.758 42 H 0.036 0.964 43 H 0.005 0.995 44 H 0.012 0.988 45 H 0.082 0.918 46 H 0.146 0.854 47 H 0.100 0.900 48 H 0.122 0.878 49 H 0.100 0.900 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.171 3.594 -10.308 24.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.306 6.306 3 C 0.051 3.949 4 H 0.141 0.859 5 C 0.298 3.702 6 O -0.448 6.448 7 N -0.345 5.345 8 C -0.018 4.018 9 C -0.191 4.191 10 C 0.296 3.704 11 O -0.448 6.448 12 N -0.368 5.368 13 C -0.024 4.024 14 C -0.007 4.007 15 N -0.323 5.323 16 C -0.345 4.345 17 H 0.069 0.931 18 C -0.241 4.241 19 N -0.575 5.575 20 Si 0.777 3.223 21 H -0.198 1.198 22 H -0.220 1.220 23 H -0.221 1.221 24 C 0.072 3.928 25 C 0.021 3.979 26 C -0.202 4.202 27 C -0.173 4.173 28 C -0.230 4.230 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.148 0.852 34 H 0.126 0.874 35 H 0.153 0.847 36 H 0.242 0.758 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.023 0.977 44 H 0.031 0.969 45 H 0.100 0.900 46 H 0.164 0.836 47 H 0.118 0.882 48 H 0.140 0.860 49 H 0.119 0.881 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.064 3.328 -9.988 23.548 hybrid contribution 1.425 0.040 0.161 1.434 sum -19.639 3.368 -9.827 22.217 Atomic orbital electron populations 1.23166 0.78648 1.04202 1.01687 1.88031 1.21959 1.25885 1.94724 1.21429 0.92845 0.87310 0.93314 0.85860 1.21080 0.85731 0.82590 0.80797 1.90722 1.67360 1.33385 1.53339 1.48942 1.25081 1.06712 1.53738 1.22347 0.98013 0.83653 0.97803 1.22367 0.99248 1.06226 0.91297 1.21190 0.82787 0.79510 0.86914 1.90726 1.30001 1.40910 1.83120 1.46013 1.36660 1.41682 1.12464 1.21983 0.95518 0.99807 0.85119 1.21679 0.91530 0.96638 0.90886 1.44645 1.25067 1.48874 1.13744 1.18932 0.88887 0.97705 1.29000 0.93138 1.25681 0.98873 0.96809 1.02708 1.70206 1.26925 1.17971 1.42412 0.85483 0.80345 0.79529 0.76937 1.19806 1.22021 1.22110 1.20757 0.94617 0.91965 0.85491 1.21879 0.82602 1.01638 0.91737 1.22921 1.07250 0.99089 0.90954 1.23010 0.94790 1.01681 0.97795 1.22817 0.95304 1.00898 1.03942 0.91137 0.88777 0.92880 0.90632 0.85236 0.87410 0.84675 0.75831 0.88406 0.92495 0.93422 0.93562 0.94870 0.94574 0.97724 0.96930 0.89963 0.83626 0.88212 0.85969 0.88142 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.97 113.37 1.13 1.40 16 2 O -0.39 -9.81 8.60 -130.05 -1.12 -10.93 16 3 C 0.11 2.54 2.19 29.84 0.07 2.60 16 4 H 0.12 1.76 6.49 -2.39 -0.02 1.75 16 5 C 0.51 17.77 6.31 87.65 0.55 18.33 16 6 O -0.57 -26.83 14.67 15.93 0.23 -26.60 16 7 N -0.61 -21.08 2.42 -814.11 -1.97 -23.05 16 8 C 0.10 2.45 5.37 86.34 0.46 2.92 16 9 C -0.15 -2.98 6.17 30.05 0.19 -2.79 16 10 C 0.51 16.23 4.75 87.54 0.42 16.64 16 11 O -0.57 -24.42 15.08 -3.01 -0.05 -24.46 16 12 N -0.72 -20.81 4.70 -460.76 -2.16 -22.97 16 13 C 0.10 3.37 6.58 86.26 0.57 3.93 16 14 C 0.12 4.89 6.09 86.13 0.52 5.41 16 15 N -0.60 -30.62 2.26 -695.48 -1.57 -32.20 16 16 C -0.21 -12.17 8.33 84.03 0.70 -11.47 16 17 H 0.05 2.97 7.85 -2.91 -0.02 2.95 16 18 C -0.05 -2.66 4.51 84.86 0.38 -2.28 16 19 N -0.93 -57.78 10.22 21.65 0.22 -57.56 16 20 Si 0.95 48.17 29.57 68.60 2.03 50.20 16 21 H -0.27 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 23 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 24 C 0.20 10.21 3.59 86.16 0.31 10.51 16 25 C 0.14 6.94 3.92 86.16 0.34 7.28 16 26 C -0.18 -3.38 5.07 -10.79 -0.05 -3.43 16 27 C -0.14 -2.12 9.61 30.59 0.29 -1.82 16 28 C -0.19 -4.51 9.88 30.60 0.30 -4.21 16 29 H 0.07 0.64 7.55 -2.39 -0.02 0.62 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 2.08 7.80 -2.39 -0.02 2.07 16 33 H 0.13 1.86 4.45 -2.39 -0.01 1.85 16 34 H 0.11 1.38 7.01 -2.39 -0.02 1.36 16 35 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.41 9.18 8.71 -92.70 -0.81 8.38 16 37 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.06 2.25 7.01 -2.39 -0.02 2.24 16 39 H 0.05 1.85 7.76 -2.39 -0.02 1.83 16 40 H 0.05 1.92 8.13 -2.38 -0.02 1.90 16 41 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 42 H 0.04 1.77 5.78 -2.39 -0.01 1.76 16 43 H 0.00 0.31 6.69 -2.38 -0.02 0.29 16 44 H 0.01 0.69 7.71 -2.39 -0.02 0.68 16 45 H 0.08 4.31 4.71 -2.39 -0.01 4.30 16 46 H 0.15 1.84 6.02 -2.38 -0.01 1.83 16 47 H 0.10 1.61 6.20 -2.38 -0.01 1.60 16 48 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -86.88 376.35 1.95 -84.93 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.16 Total: 19.62 kcal Atomic # 6 Polarization: 36.84 SS G_CDS: 6.18 Total: 43.01 kcal Atomic # 7 Polarization: -130.29 SS G_CDS: -5.49 Total: -135.78 kcal Atomic # 8 Polarization: -61.06 SS G_CDS: -0.93 Total: -61.99 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.20 kcal Total: -86.88 1.95 -84.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070959815.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.885 kcal (2) G-P(sol) polarization free energy of solvation -86.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds