Wall clock time and date at job start Sat Apr 11 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00017 * 2 1 4 4 H 1.09000 * 110.92194 * 26.08847 * 3 2 1 5 5 C 1.54911 * 110.99926 * 262.18908 * 3 2 1 6 6 N 1.47427 * 104.83358 * 204.91499 * 5 3 2 7 7 C 1.36930 * 125.65271 * 204.16324 * 6 5 3 8 8 H 1.08004 * 120.00259 * 179.97438 * 7 6 5 9 9 C 1.38815 * 119.99954 * 359.96520 * 7 6 5 10 10 N 1.31617 * 119.99987 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00031 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47512 * 90.00126 * 11 9 7 13 13 H 1.48506 * 109.47338 * 210.00038 * 11 9 7 14 14 H 1.48499 * 109.47362 * 329.99814 * 11 9 7 15 15 C 1.47024 * 108.70108 * 24.13440 * 6 5 3 16 16 C 1.54326 * 107.27055 * 358.93539 * 15 6 5 17 17 H 1.09002 * 110.71739 * 96.35062 * 16 15 6 18 18 N 1.46495 * 110.72187 * 219.44549 * 16 15 6 19 19 C 1.34780 * 120.00075 * 273.54841 * 18 16 15 20 20 O 1.21275 * 119.99809 * 359.97438 * 19 18 16 21 21 C 1.50698 * 119.99987 * 179.97438 * 19 18 16 22 22 C 1.53001 * 109.47300 * 179.97438 * 21 19 18 23 23 H 1.08996 * 109.60301 * 330.89979 * 22 21 19 24 24 C 1.52993 * 109.73934 * 91.30508 * 22 21 19 25 25 C 1.51778 * 110.87327 * 33.37852 * 24 22 21 26 26 C 1.51792 * 113.81298 * 66.99842 * 25 24 22 27 27 C 1.53062 * 110.74406 * 293.18037 * 26 25 24 28 28 C 1.51425 * 108.67711 * 84.85697 * 27 26 25 29 29 O 1.21282 * 119.89615 * 108.94650 * 28 27 26 30 30 N 1.33370 * 120.21052 * 289.17541 * 28 27 26 31 31 H 1.08994 * 109.47302 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47241 * 300.00908 * 1 2 3 33 33 H 1.09008 * 109.46515 * 60.00249 * 1 2 3 34 34 H 1.09005 * 110.36435 * 86.08126 * 5 3 2 35 35 H 1.08997 * 110.46400 * 323.80463 * 5 3 2 36 36 H 0.96995 * 120.00140 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.88188 * 239.52609 * 15 6 5 38 38 H 1.08992 * 109.88387 * 118.35518 * 15 6 5 39 39 H 0.96998 * 119.99886 * 93.54765 * 18 16 15 40 40 H 1.09004 * 109.47034 * 59.99971 * 21 19 18 41 41 H 1.09000 * 109.47427 * 299.99730 * 21 19 18 42 42 H 1.09000 * 109.19486 * 153.73424 * 24 22 21 43 43 H 1.09001 * 109.19855 * 273.02115 * 24 22 21 44 44 H 1.09004 * 108.61577 * 188.11105 * 25 24 22 45 45 H 1.08998 * 108.62182 * 306.01286 * 25 24 22 46 46 H 1.09000 * 109.22408 * 53.50179 * 26 25 24 47 47 H 1.08997 * 109.22501 * 172.90136 * 26 25 24 48 48 H 1.09001 * 109.63442 * 204.62232 * 27 26 25 49 49 H 1.09003 * 109.63584 * 325.02174 * 27 26 25 50 50 H 0.97003 * 119.78434 * 179.49413 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3332 2.0329 0.4477 5 6 2.4156 1.7326 -1.4328 6 7 3.4910 2.7227 -1.2414 7 6 3.8424 3.7017 -2.1321 8 1 4.6482 4.3814 -1.8973 9 6 3.1630 3.8203 -3.3368 10 7 2.1814 2.9915 -3.6231 11 14 3.6418 5.1562 -4.5514 12 1 4.6822 4.6361 -5.4747 13 1 2.4472 5.5664 -5.3325 14 1 4.1765 6.3283 -3.8129 15 6 4.1234 2.4854 0.0645 16 6 3.3824 1.3033 0.7243 17 1 3.9135 0.3681 0.5472 18 7 3.2107 1.5358 2.1604 19 6 4.1855 1.1823 3.0216 20 8 5.2044 0.6714 2.6075 21 6 4.0091 1.4220 4.4989 22 6 5.2512 0.9333 5.2467 23 1 5.7099 0.1120 4.6963 24 6 6.2541 2.0801 5.3876 25 6 5.5376 3.4094 5.5396 26 6 4.7622 3.5429 6.8377 27 6 3.5843 2.5660 6.8685 28 6 4.0806 1.2236 7.3631 29 8 3.7634 0.8308 8.4659 30 7 4.8690 0.4738 6.5918 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.5687 2.1871 -1.9470 35 1 2.7848 0.8755 -1.9959 36 1 1.7069 3.0742 -4.4650 37 1 4.0316 3.3747 0.6879 38 1 5.1748 2.2334 -0.0731 39 1 2.3956 1.9441 2.4916 40 1 3.1341 0.8772 4.8535 41 1 3.8715 2.4880 4.6802 42 1 6.8765 1.9060 6.2654 43 1 6.8873 2.1135 4.5010 44 1 6.2758 4.2100 5.4914 45 1 4.8430 3.5275 4.7080 46 1 5.4262 3.3310 7.6757 47 1 4.3851 4.5616 6.9273 48 1 2.8143 2.9419 7.5421 49 1 3.1721 2.4574 5.8653 50 1 5.1893 -0.3818 6.9178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082345158.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:15 Heat of formation + Delta-G solvation = -92.501593 kcal Electronic energy + Delta-G solvation = -31025.183401 eV Core-core repulsion = 26860.095540 eV Total energy + Delta-G solvation = -4165.087861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.06527 -40.80228 -39.59743 -38.13031 -37.47462 -35.60469 -34.89523 -33.70143 -32.31509 -31.19973 -30.27737 -28.70192 -27.49274 -26.63191 -25.84373 -24.77756 -22.68379 -22.24389 -21.51440 -20.86321 -20.20071 -19.18727 -18.83480 -18.05266 -17.68065 -17.43532 -17.11656 -16.77520 -16.40635 -15.93171 -15.77805 -15.68456 -15.42286 -15.18949 -14.98210 -14.89709 -14.59648 -14.46401 -14.28664 -13.87426 -13.77566 -13.61267 -13.15441 -13.06238 -12.91465 -12.73568 -12.65426 -12.51026 -12.32684 -12.29773 -12.03318 -11.87614 -11.81556 -11.61024 -11.55353 -11.24131 -10.92780 -10.78389 -10.69263 -10.49488 -10.16267 -10.07295 -8.94763 -7.79220 -5.25994 1.48817 1.50666 1.59001 1.60247 1.66721 1.97219 2.40518 2.47401 2.77236 3.32034 3.44662 3.56298 3.62191 3.71233 3.79614 3.88147 3.94608 3.99249 4.09858 4.13473 4.23226 4.37838 4.40481 4.48247 4.51418 4.52637 4.63263 4.64296 4.68241 4.84185 4.89295 4.90251 4.91986 5.00077 5.02876 5.12700 5.25808 5.27553 5.31543 5.43965 5.47255 5.49278 5.70992 5.83422 6.21273 6.28537 6.33123 6.56408 7.06406 7.23541 7.27378 7.71899 8.33853 9.22116 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.002763 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.182400 B =10132.071343 C =11195.034643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.077 3.923 4 H 0.093 0.907 5 C 0.145 3.855 6 N -0.619 5.619 7 C -0.240 4.240 8 H 0.084 0.916 9 C -0.063 4.063 10 N -0.948 5.948 11 Si 0.982 3.018 12 H -0.291 1.291 13 H -0.291 1.291 14 H -0.266 1.266 15 C 0.132 3.868 16 C 0.154 3.846 17 H 0.077 0.923 18 N -0.703 5.703 19 C 0.517 3.483 20 O -0.575 6.575 21 C -0.175 4.175 22 C 0.154 3.846 23 H 0.105 0.895 24 C -0.131 4.131 25 C -0.135 4.135 26 C -0.107 4.107 27 C -0.168 4.168 28 C 0.516 3.484 29 O -0.605 6.605 30 N -0.710 5.710 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.034 0.966 34 H 0.085 0.915 35 H -0.014 1.014 36 H 0.249 0.751 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.416 0.584 40 H 0.120 0.880 41 H 0.155 0.845 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.055 0.945 47 H 0.097 0.903 48 H 0.100 0.900 49 H 0.131 0.869 50 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.463 -0.074 19.917 19.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C 0.017 3.983 4 H 0.110 0.890 5 C 0.019 3.981 6 N -0.347 5.347 7 C -0.369 4.369 8 H 0.102 0.898 9 C -0.255 4.255 10 N -0.597 5.597 11 Si 0.810 3.190 12 H -0.218 1.218 13 H -0.218 1.218 14 H -0.191 1.191 15 C 0.006 3.994 16 C 0.047 3.953 17 H 0.096 0.904 18 N -0.355 5.355 19 C 0.304 3.696 20 O -0.454 6.454 21 C -0.214 4.214 22 C 0.049 3.951 23 H 0.123 0.877 24 C -0.170 4.170 25 C -0.172 4.172 26 C -0.145 4.145 27 C -0.207 4.207 28 C 0.305 3.695 29 O -0.487 6.487 30 N -0.361 5.361 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.103 0.897 35 H 0.004 0.996 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.034 0.966 39 H 0.253 0.747 40 H 0.138 0.862 41 H 0.172 0.828 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.074 0.926 47 H 0.115 0.885 48 H 0.119 0.881 49 H 0.149 0.851 50 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.091 -0.541 19.940 19.948 hybrid contribution 0.066 0.186 -0.981 1.000 sum 0.157 -0.355 18.959 18.963 Atomic orbital electron populations 1.22984 0.79336 1.03835 1.00763 1.87844 1.21692 1.27010 1.94954 1.23617 0.93385 0.84837 0.96422 0.88969 1.22050 0.93285 0.90211 0.92598 1.44549 1.38108 1.35058 1.16965 1.19455 1.13982 1.06628 0.96840 0.89800 1.25631 0.98723 1.01568 0.99613 1.69993 1.25500 1.40088 1.24133 0.85034 0.76668 0.78751 0.78588 1.21804 1.21773 1.19079 1.21690 0.95020 0.95781 0.86920 1.21618 0.95590 0.97725 0.80349 0.90448 1.45773 1.21210 1.63270 1.05236 1.21022 0.82446 0.76697 0.89390 1.90710 1.29678 1.44817 1.80241 1.23039 1.01044 1.07794 0.89484 1.21088 0.93804 0.99051 0.81180 0.87724 1.21744 0.97971 0.94181 1.03074 1.21359 1.00370 0.97356 0.98067 1.21213 0.95579 0.99889 0.97807 1.22741 1.00510 0.91149 1.06307 1.21117 0.77150 0.87421 0.83831 1.90730 1.60149 1.74712 1.23120 1.46121 1.50341 1.22944 1.16648 0.88074 0.91833 0.94711 0.89680 0.99632 0.94142 0.93590 0.96607 0.74654 0.86164 0.82842 0.90882 0.90667 0.90420 0.90242 0.92620 0.88459 0.88098 0.85149 0.75967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.85 113.37 1.23 1.89 16 2 O -0.40 -13.30 10.51 -148.98 -1.57 -14.87 16 3 C 0.08 2.71 3.15 31.99 0.10 2.81 16 4 H 0.09 2.80 7.69 -2.39 -0.02 2.78 16 5 C 0.14 6.98 5.62 86.86 0.49 7.47 16 6 N -0.62 -31.05 3.39 -691.98 -2.35 -33.40 16 7 C -0.24 -13.09 10.27 84.04 0.86 -12.23 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 9 C -0.06 -3.44 5.49 84.86 0.47 -2.98 16 10 N -0.95 -54.73 10.09 21.65 0.22 -54.51 16 11 Si 0.98 44.24 29.55 68.60 2.03 46.26 16 12 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 14 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 15 C 0.13 5.37 6.99 86.73 0.61 5.98 16 16 C 0.15 5.22 2.97 46.18 0.14 5.35 16 17 H 0.08 3.04 7.69 -2.39 -0.02 3.03 16 18 N -0.70 -16.24 5.13 -436.92 -2.24 -18.48 16 19 C 0.52 11.63 7.82 87.66 0.69 12.32 16 20 O -0.58 -18.00 15.11 -3.01 -0.05 -18.05 16 21 C -0.17 -2.30 3.28 29.85 0.10 -2.20 16 22 C 0.15 2.25 3.11 44.86 0.14 2.39 16 23 H 0.10 1.88 6.91 -2.39 -0.02 1.86 16 24 C -0.13 -1.80 5.57 30.19 0.17 -1.63 16 25 C -0.13 -1.44 5.19 29.80 0.15 -1.28 16 26 C -0.11 -1.07 5.67 30.22 0.17 -0.90 16 27 C -0.17 -1.94 5.50 30.10 0.17 -1.78 16 28 C 0.52 9.67 6.68 88.11 0.59 10.26 16 29 O -0.60 -17.10 17.92 -3.04 -0.05 -17.16 16 30 N -0.71 -10.85 5.09 -442.19 -2.25 -13.10 16 31 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.06 1.20 8.12 -2.38 -0.02 1.19 16 33 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.09 4.57 5.87 -2.38 -0.01 4.56 16 35 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 36 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 37 H 0.05 1.72 8.03 -2.39 -0.02 1.70 16 38 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.42 6.61 8.52 -92.71 -0.79 5.82 16 40 H 0.12 1.23 7.47 -2.38 -0.02 1.22 16 41 H 0.15 1.34 2.74 -2.39 -0.01 1.34 16 42 H 0.07 0.99 8.05 -2.39 -0.02 0.97 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.08 0.77 5.56 -2.39 -0.01 0.76 16 46 H 0.05 0.71 7.87 -2.39 -0.02 0.69 16 47 H 0.10 0.66 8.14 -2.39 -0.02 0.65 16 48 H 0.10 1.14 8.13 -2.39 -0.02 1.12 16 49 H 0.13 0.96 3.67 -2.39 -0.01 0.95 16 50 H 0.40 5.88 8.91 -92.71 -0.83 5.06 16 Total: -1.00 -76.40 384.63 -0.83 -77.23 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -0.63 Total: 20.59 kcal Atomic # 6 Polarization: 19.41 SS G_CDS: 6.06 Total: 25.47 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -6.62 Total: -119.49 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -1.67 Total: -50.07 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -76.40 -0.83 -77.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082345158.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.267 kcal (2) G-P(sol) polarization free energy of solvation -76.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds