Wall clock time and date at job start Sat Apr 11 2020 05:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47195 * 64.99855 * 4 3 2 6 6 C 1.46772 * 124.34753 * 90.00149 * 5 4 3 7 7 C 1.54476 * 105.47322 * 197.01830 * 6 5 4 8 8 H 1.09005 * 110.96959 * 92.69998 * 7 6 5 9 9 C 1.50706 * 110.97168 * 216.42684 * 7 6 5 10 10 O 1.21284 * 119.99502 * 0.02562 * 9 7 6 11 11 N 1.34771 * 120.00048 * 180.02562 * 9 7 6 12 12 C 1.46502 * 119.99653 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.46900 * 180.02562 * 12 11 9 14 14 H 1.09001 * 112.85162 * 43.80041 * 13 12 11 15 15 C 1.53788 * 113.61463 * 174.99950 * 13 12 11 16 16 C 1.53778 * 87.08365 * 139.97938 * 15 13 12 17 17 H 1.09002 * 113.61561 * 89.19275 * 16 15 13 18 18 N 1.46496 * 113.61766 * 220.02122 * 16 15 13 19 19 C 1.36930 * 120.00231 * 205.00017 * 18 16 15 20 20 H 1.07994 * 120.00252 * 359.97438 * 19 18 16 21 21 C 1.38818 * 119.99936 * 179.97438 * 19 18 16 22 22 N 1.31614 * 119.99817 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99895 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46898 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46903 * 120.00119 * 23 21 19 26 26 H 1.48499 * 109.47222 * 240.00428 * 23 21 19 27 27 C 1.53786 * 87.08246 * 334.56851 * 16 15 13 28 28 C 1.54629 * 101.76589 * 334.58447 * 7 6 5 29 29 C 1.34417 * 124.35563 * 269.70389 * 5 4 3 30 30 O 1.21287 * 124.93778 * 359.57042 * 29 5 4 31 31 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 33 33 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 34 34 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 35 35 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 36 36 H 1.09001 * 109.47630 * 185.00204 * 4 3 2 37 37 H 1.09004 * 109.47346 * 305.00335 * 4 3 2 38 38 H 1.08997 * 110.24467 * 316.01884 * 6 5 4 39 39 H 1.08997 * 110.24349 * 77.93227 * 6 5 4 40 40 H 0.97000 * 120.00448 * 359.97438 * 11 9 7 41 41 H 1.09005 * 109.46828 * 299.99724 * 12 11 9 42 42 H 1.08994 * 109.47215 * 59.99567 * 12 11 9 43 43 H 1.09005 * 113.61319 * 254.52832 * 15 13 12 44 44 H 1.08998 * 113.61093 * 25.34250 * 15 13 12 45 45 H 0.97008 * 119.99429 * 24.99034 * 18 16 15 46 46 H 0.97007 * 120.00029 * 179.97438 * 22 21 19 47 47 H 1.09001 * 113.61236 * 270.88504 * 27 16 15 48 48 H 1.09001 * 113.61802 * 139.98351 * 27 16 15 49 49 H 1.09003 * 110.48671 * 143.47678 * 28 7 6 50 50 H 1.08996 * 110.48433 * 265.98619 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.3111 1.3087 -2.4724 7 6 4.2866 0.2656 -3.6116 8 1 3.3055 0.2280 -4.0851 9 6 5.3623 0.5513 -4.6277 10 8 6.1005 1.5019 -4.4782 11 7 5.5039 -0.2495 -5.7025 12 6 6.5499 0.0280 -6.6899 13 6 6.4940 -1.0224 -7.8009 14 1 5.4775 -1.2341 -8.1325 15 6 7.4745 -0.7518 -8.9544 16 6 7.7426 -2.2659 -8.9773 17 1 7.0686 -2.8189 -9.6315 18 7 9.1508 -2.6094 -9.1897 19 6 9.4855 -3.8207 -9.7336 20 1 8.7115 -4.5229 -10.0056 21 6 10.8199 -4.1459 -9.9354 22 7 11.7632 -3.2902 -9.6035 23 14 11.2766 -5.7986 -10.6767 24 1 10.0412 -6.5726 -10.9595 25 1 12.0259 -5.5840 -11.9407 26 1 12.1256 -6.5528 -9.7198 27 6 7.3206 -2.2835 -7.4985 28 6 4.5819 -1.0448 -2.8456 29 6 4.1299 -0.7590 -1.4304 30 8 3.9327 -1.6016 -0.5806 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.6886 1.8464 -0.8900 35 1 1.6887 1.8463 0.8900 36 1 3.9786 2.1764 0.0890 37 1 3.8515 0.5681 0.8409 38 1 3.5689 2.0855 -2.6563 39 1 5.3040 1.7496 -2.3842 40 1 4.9137 -1.0100 -5.8218 41 1 6.3919 1.0180 -7.1180 42 1 7.5255 -0.0067 -6.2052 43 1 6.9928 -0.3800 -9.8588 44 1 8.3403 -0.1581 -8.6613 45 1 9.8461 -1.9787 -8.9452 46 1 12.6957 -3.5177 -9.7441 47 1 8.1451 -2.1097 -6.8071 48 1 6.7147 -3.1481 -7.2276 49 1 4.0133 -1.8718 -3.2710 50 1 5.6489 -1.2664 -2.8659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086100950.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:24 Heat of formation + Delta-G solvation = -82.299382 kcal Electronic energy + Delta-G solvation = -29043.529173 eV Core-core repulsion = 24878.883713 eV Total energy + Delta-G solvation = -4164.645460 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10957 -39.61939 -38.51282 -38.13448 -36.42848 -34.81400 -33.78068 -33.25380 -30.41374 -29.74557 -28.09640 -27.41362 -26.65294 -25.12633 -24.29853 -23.58574 -22.84845 -21.11392 -20.44692 -19.72908 -19.07694 -17.81251 -17.41643 -17.06994 -16.96573 -16.27567 -15.96730 -15.94950 -15.61655 -15.30098 -15.06922 -14.72019 -14.59692 -14.02611 -13.99675 -13.73408 -13.57013 -13.35073 -13.15547 -13.10598 -12.83226 -12.45084 -12.22278 -12.04700 -11.89162 -11.79638 -11.67689 -11.57079 -11.43708 -11.26165 -10.86903 -10.56834 -10.38263 -10.18227 -10.12324 -10.06053 -9.85786 -9.82849 -9.52176 -9.14848 -9.02295 -8.89191 -6.98198 -5.80093 -3.08975 2.32117 2.41868 2.55651 3.00310 3.37124 3.41602 3.47249 3.49561 3.87647 4.01244 4.37197 4.53176 4.56695 4.56863 4.63968 4.76623 4.81533 4.89679 4.91723 4.93118 4.96810 4.98444 5.11414 5.18336 5.22167 5.29054 5.33985 5.41317 5.44276 5.46284 5.53020 5.76761 5.79572 5.89317 6.06586 6.15973 6.18172 6.26950 6.32091 6.38546 6.56340 6.73195 6.79026 6.82676 7.08098 7.30519 7.68093 7.95023 7.99613 8.38378 9.49651 10.07738 10.41720 11.42279 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021024 B = 0.001730 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.504113 B =16177.930470 C =16685.065511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.376 6.376 3 C 0.041 3.959 4 C 0.129 3.871 5 N -0.620 5.620 6 C 0.118 3.882 7 C -0.123 4.123 8 H 0.116 0.884 9 C 0.523 3.477 10 O -0.537 6.537 11 N -0.719 5.719 12 C 0.131 3.869 13 C -0.127 4.127 14 H 0.088 0.912 15 C -0.142 4.142 16 C 0.165 3.835 17 H 0.075 0.925 18 N -0.713 5.713 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.161 4.161 28 C -0.145 4.145 29 C 0.526 3.474 30 O -0.515 6.515 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.402 0.598 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.078 0.922 48 H 0.054 0.946 49 H 0.111 0.889 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.814 12.876 16.734 31.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.037 4.037 4 C 0.007 3.993 5 N -0.355 5.355 6 C -0.005 4.005 7 C -0.145 4.145 8 H 0.134 0.866 9 C 0.307 3.693 10 O -0.414 6.414 11 N -0.370 5.370 12 C 0.008 3.992 13 C -0.147 4.147 14 H 0.107 0.893 15 C -0.182 4.182 16 C 0.053 3.947 17 H 0.093 0.907 18 N -0.351 5.351 19 C -0.376 4.376 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.202 4.202 28 C -0.186 4.186 29 C 0.313 3.687 30 O -0.389 6.389 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.236 0.764 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.097 0.903 48 H 0.073 0.927 49 H 0.129 0.871 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -23.230 12.781 17.247 31.630 hybrid contribution -0.061 -0.680 -0.444 0.814 sum -23.291 12.101 16.804 31.165 Atomic orbital electron populations 1.22735 0.81303 1.02840 0.99619 1.88068 1.19313 1.26783 1.95280 1.23020 0.94472 0.85731 1.00510 1.21414 0.92086 0.99441 0.86407 1.48177 1.67453 1.07323 1.12526 1.21957 1.03045 0.93637 0.81897 1.22213 1.00160 0.96714 0.95427 0.86598 1.20040 0.84661 0.82653 0.81929 1.90729 1.45325 1.29361 1.76000 1.46026 1.36238 1.30911 1.23787 1.21490 0.90703 0.98673 0.88330 1.22646 0.99221 0.96766 0.96039 0.89343 1.23453 0.98172 1.00170 0.96420 1.21521 0.88008 0.92089 0.93063 0.90667 1.42417 1.00551 1.18357 1.73728 1.19348 0.91533 0.93407 1.33282 0.91028 1.24774 0.95776 0.98378 1.01996 1.69670 0.99421 1.35334 1.53526 0.86121 0.78085 0.83503 0.78492 1.20529 1.21850 1.21842 1.23957 0.98721 0.95180 1.02354 1.22347 1.05010 0.97626 0.93573 1.20612 0.76276 0.82171 0.89679 1.90749 1.50472 1.49124 1.48561 0.89620 0.94225 0.94323 0.93096 0.92275 0.88562 0.88965 0.90073 0.88873 0.76372 0.91601 0.91045 0.92012 0.90105 0.78071 0.93489 0.90329 0.92720 0.87081 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.62 10.32 -35.23 -0.36 -3.99 16 3 C 0.04 0.26 6.28 37.16 0.23 0.50 16 4 C 0.13 0.89 6.33 -4.04 -0.03 0.86 16 5 N -0.62 -5.33 2.90 -172.41 -0.50 -5.83 16 6 C 0.12 0.85 6.71 -3.12 -0.02 0.83 16 7 C -0.12 -0.87 3.54 -90.14 -0.32 -1.18 16 8 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 9 C 0.52 5.20 7.06 -10.98 -0.08 5.13 16 10 O -0.54 -7.41 15.51 5.55 0.09 -7.33 16 11 N -0.72 -6.62 5.56 -60.29 -0.33 -6.96 16 12 C 0.13 1.52 5.51 -4.04 -0.02 1.49 16 13 C -0.13 -1.54 3.76 -89.80 -0.34 -1.88 16 14 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 15 C -0.14 -2.14 7.39 -25.92 -0.19 -2.33 16 16 C 0.17 3.08 4.48 -67.12 -0.30 2.78 16 17 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 18 N -0.71 -17.44 5.40 -52.64 -0.28 -17.73 16 19 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 23 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 C -0.16 -2.51 7.43 -25.91 -0.19 -2.70 16 28 C -0.15 -1.18 6.41 -26.74 -0.17 -1.35 16 29 C 0.53 5.83 7.74 -10.86 -0.08 5.74 16 30 O -0.51 -7.83 17.53 5.55 0.10 -7.73 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.77 7.92 -51.93 -0.41 0.36 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.80 6.97 -51.93 -0.36 0.44 16 40 H 0.40 2.74 8.47 -40.82 -0.35 2.39 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.97 7.84 -51.93 -0.41 0.56 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.08 1.29 8.08 -51.93 -0.42 0.87 16 45 H 0.39 10.07 7.93 -40.82 -0.32 9.75 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.08 1.37 7.90 -51.93 -0.41 0.96 16 48 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.11 0.95 7.89 -51.93 -0.41 0.54 16 LS Contribution 413.34 15.07 6.23 6.23 Total: -1.00 -35.87 413.34 -8.56 -44.43 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -8.55 Total: 7.07 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -0.64 Total: 1.89 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.39 Total: -57.75 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.18 Total: -19.04 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.87 -8.56 -44.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086100950.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.868 kcal (2) G-P(sol) polarization free energy of solvation -35.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds