Wall clock time and date at job start Sat Apr 11 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47195 * 64.99855 * 4 3 2 6 6 C 1.46772 * 124.34753 * 90.00149 * 5 4 3 7 7 C 1.54476 * 105.47322 * 197.01830 * 6 5 4 8 8 H 1.09004 * 110.96998 * 92.73600 * 7 6 5 9 9 C 1.50701 * 110.97128 * 216.46250 * 7 6 5 10 10 O 1.21286 * 119.99948 * 0.02562 * 9 7 6 11 11 N 1.34772 * 120.00178 * 179.97438 * 9 7 6 12 12 C 1.46502 * 119.99833 * 180.02562 * 11 9 7 13 13 C 1.53006 * 109.47009 * 180.02562 * 12 11 9 14 14 H 1.09004 * 112.84778 * 45.33617 * 13 12 11 15 15 C 1.53778 * 113.61428 * 176.52721 * 13 12 11 16 16 C 1.53777 * 87.08080 * 139.98110 * 15 13 12 17 17 H 1.09003 * 113.62179 * 219.93814 * 16 15 13 18 18 N 1.46505 * 113.61375 * 89.11706 * 16 15 13 19 19 C 1.36940 * 120.00021 * 155.00215 * 18 16 15 20 20 H 1.08003 * 120.00003 * 0.02562 * 19 18 16 21 21 C 1.38809 * 119.99798 * 179.97438 * 19 18 16 22 22 N 1.31622 * 120.00041 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99918 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47110 * 90.00232 * 23 21 19 25 25 H 1.48500 * 109.46996 * 210.00538 * 23 21 19 26 26 H 1.48507 * 109.47019 * 330.00216 * 23 21 19 27 27 C 1.53781 * 113.61565 * 274.13764 * 13 12 11 28 28 C 1.54629 * 101.76589 * 334.58447 * 7 6 5 29 29 C 1.34417 * 124.35563 * 269.70389 * 5 4 3 30 30 O 1.21287 * 124.93778 * 359.57042 * 29 5 4 31 31 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 32 32 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 33 33 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 35 35 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 36 36 H 1.09001 * 109.47630 * 185.00204 * 4 3 2 37 37 H 1.09004 * 109.47346 * 305.00335 * 4 3 2 38 38 H 1.08997 * 110.24467 * 316.01884 * 6 5 4 39 39 H 1.08997 * 110.24349 * 77.93227 * 6 5 4 40 40 H 0.96997 * 120.00441 * 0.02562 * 11 9 7 41 41 H 1.09002 * 109.47253 * 300.00458 * 12 11 9 42 42 H 1.08997 * 109.47292 * 60.00778 * 12 11 9 43 43 H 1.08993 * 113.61878 * 254.53272 * 15 13 12 44 44 H 1.09000 * 113.61148 * 25.35305 * 15 13 12 45 45 H 0.96998 * 119.99989 * 335.00325 * 18 16 15 46 46 H 0.97003 * 119.99951 * 179.97438 * 22 21 19 47 47 H 1.09001 * 113.61434 * 334.56947 * 27 13 12 48 48 H 1.09001 * 113.61155 * 105.46936 * 27 13 12 49 49 H 1.09003 * 110.48671 * 143.47678 * 28 7 6 50 50 H 1.08996 * 110.48433 * 265.98619 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.3111 1.3087 -2.4724 7 6 4.2866 0.2656 -3.6116 8 1 3.3057 0.2284 -4.0855 9 6 5.3628 0.5508 -4.6272 10 8 6.1015 1.5011 -4.4775 11 7 5.5052 -0.2506 -5.7014 12 6 6.5518 0.0264 -6.6884 13 6 6.4967 -1.0248 -7.7988 14 1 5.4827 -1.2174 -8.1493 15 6 7.5037 -0.7752 -8.9339 16 6 7.7430 -2.2942 -8.9495 17 1 8.7882 -2.5703 -9.0888 18 7 6.8385 -3.0216 -9.8434 19 6 7.2153 -4.2316 -10.3622 20 1 8.1791 -4.6499 -10.1120 21 6 6.3581 -4.9210 -11.2088 22 7 5.1833 -4.4115 -11.5133 23 14 6.8724 -6.5713 -11.9171 24 1 6.4420 -7.6585 -11.0018 25 1 6.2347 -6.7604 -13.2448 26 1 8.3494 -6.6066 -12.0678 27 6 7.2906 -2.3021 -7.4779 28 6 4.5819 -1.0448 -2.8456 29 6 4.1299 -0.7590 -1.4304 30 8 3.9327 -1.6016 -0.5806 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6886 1.8464 -0.8900 35 1 1.6887 1.8463 0.8900 36 1 3.9786 2.1764 0.0890 37 1 3.8515 0.5681 0.8409 38 1 3.5689 2.0855 -2.6563 39 1 5.3040 1.7496 -2.3842 40 1 4.9147 -1.0108 -5.8210 41 1 6.3940 1.0160 -7.1172 42 1 7.5271 -0.0081 -6.2032 43 1 7.0466 -0.3958 -9.8476 44 1 8.3752 -0.1978 -8.6252 45 1 5.9728 -2.6461 -10.0679 46 1 4.5845 -4.8931 -12.1052 47 1 8.1044 -2.1441 -6.7701 48 1 6.6616 -3.1535 -7.2180 49 1 4.0133 -1.8718 -3.2710 50 1 5.6489 -1.2664 -2.8659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086381399.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:30 Heat of formation + Delta-G solvation = -81.586035 kcal Electronic energy + Delta-G solvation = -29217.027452 eV Core-core repulsion = 25052.412924 eV Total energy + Delta-G solvation = -4164.614527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.07741 -39.59563 -38.54296 -38.09871 -36.40039 -34.77792 -33.74282 -33.17969 -30.34690 -29.68795 -28.06187 -27.40521 -26.61431 -25.10733 -24.21578 -23.52652 -22.84900 -21.68214 -20.39382 -19.70439 -18.47094 -17.77931 -17.41521 -17.25890 -16.91736 -16.21816 -15.93163 -15.85762 -15.58143 -15.27418 -15.01613 -14.77250 -14.28365 -14.12025 -13.96110 -13.73101 -13.59516 -13.31454 -13.11439 -13.02950 -12.89393 -12.42187 -12.30491 -12.18468 -11.96493 -11.88864 -11.62918 -11.53729 -11.43706 -11.07598 -10.86572 -10.53788 -10.35312 -10.19527 -10.08606 -9.98208 -9.78584 -9.72534 -9.51564 -9.11379 -8.99752 -8.91510 -7.03510 -5.83966 -3.13050 2.34984 2.44701 2.58931 3.05068 3.40167 3.40833 3.45761 3.47091 3.91701 4.05193 4.42095 4.53177 4.56748 4.60056 4.67077 4.81567 4.84904 4.92482 4.98072 4.99901 5.01927 5.03137 5.14639 5.18442 5.25435 5.34218 5.37937 5.41999 5.44430 5.55439 5.56682 5.65240 5.81287 5.89932 6.05666 6.16858 6.18755 6.31071 6.33347 6.54318 6.70464 6.76917 6.84894 6.85488 7.00106 7.35819 7.66308 7.97894 8.02811 8.35250 9.46076 10.03182 10.37267 11.38393 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.001914 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.022845 B =14627.090150 C =15655.821514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.376 6.376 3 C 0.040 3.960 4 C 0.129 3.871 5 N -0.620 5.620 6 C 0.118 3.882 7 C -0.124 4.124 8 H 0.117 0.883 9 C 0.524 3.476 10 O -0.541 6.541 11 N -0.718 5.718 12 C 0.130 3.870 13 C -0.120 4.120 14 H 0.093 0.907 15 C -0.148 4.148 16 C 0.167 3.833 17 H 0.062 0.938 18 N -0.706 5.706 19 C -0.243 4.243 20 H 0.072 0.928 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.169 4.169 28 C -0.145 4.145 29 C 0.526 3.474 30 O -0.515 6.515 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.405 0.595 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.385 0.615 46 H 0.256 0.744 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.112 0.888 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.373 15.717 21.644 27.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.038 4.038 4 C 0.007 3.993 5 N -0.355 5.355 6 C -0.005 4.005 7 C -0.146 4.146 8 H 0.135 0.865 9 C 0.308 3.692 10 O -0.419 6.419 11 N -0.368 5.368 12 C 0.007 3.993 13 C -0.139 4.139 14 H 0.111 0.889 15 C -0.187 4.187 16 C 0.055 3.945 17 H 0.081 0.919 18 N -0.344 5.344 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.210 4.210 28 C -0.185 4.185 29 C 0.313 3.687 30 O -0.389 6.389 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.239 0.761 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.219 0.781 46 H 0.066 0.934 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.130 0.870 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.765 15.630 22.161 27.724 hybrid contribution -0.798 -0.773 -0.627 1.276 sum -6.563 14.857 21.534 26.972 Atomic orbital electron populations 1.22739 0.81257 1.02885 0.99624 1.88067 1.19353 1.26736 1.95280 1.23018 0.94459 0.85779 1.00510 1.21408 0.92126 0.99378 0.86404 1.48182 1.67472 1.07332 1.12519 1.21950 1.02962 0.93657 0.81905 1.22219 1.00307 0.96658 0.95416 0.86492 1.20034 0.84618 0.82564 0.81948 1.90709 1.45527 1.29456 1.76188 1.46045 1.36173 1.30944 1.23655 1.21525 0.90368 0.98929 0.88468 1.22715 1.00075 0.95706 0.95361 0.88864 1.23438 0.98184 0.99611 0.97509 1.21093 0.94537 0.89802 0.89114 0.91946 1.42169 1.17951 1.21030 1.53252 1.19290 1.00742 0.95387 1.21947 0.90980 1.24765 0.96521 0.99127 1.00468 1.69659 1.08992 1.39216 1.40193 0.86168 0.77701 0.83863 0.78316 1.21654 1.21761 1.20691 1.23918 0.99382 0.96587 1.01085 1.22344 1.04904 0.97748 0.93545 1.20618 0.76270 0.82154 0.89672 1.90747 1.50474 1.49119 1.48578 0.94242 0.94276 0.89590 0.93077 0.92303 0.88607 0.88999 0.90076 0.88939 0.76082 0.91691 0.91438 0.91322 0.90466 0.78128 0.93434 0.91407 0.91445 0.86966 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.38 -3.83 10.32 -35.23 -0.36 -4.20 16 3 C 0.04 0.28 6.28 37.16 0.23 0.51 16 4 C 0.13 0.92 6.33 -4.04 -0.03 0.90 16 5 N -0.62 -5.53 2.90 -172.41 -0.50 -6.03 16 6 C 0.12 0.90 6.71 -3.12 -0.02 0.88 16 7 C -0.12 -0.96 3.55 -90.14 -0.32 -1.28 16 8 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 9 C 0.52 5.47 7.06 -10.99 -0.08 5.39 16 10 O -0.54 -7.45 15.51 5.55 0.09 -7.37 16 11 N -0.72 -7.30 5.56 -60.29 -0.33 -7.63 16 12 C 0.13 1.54 5.50 -4.04 -0.02 1.52 16 13 C -0.12 -1.64 3.62 -89.81 -0.33 -1.96 16 14 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 15 C -0.15 -2.23 7.39 -25.92 -0.19 -2.42 16 16 C 0.17 3.12 4.57 -67.03 -0.31 2.81 16 17 H 0.06 1.19 8.10 -51.93 -0.42 0.76 16 18 N -0.71 -16.86 5.31 -52.55 -0.28 -17.14 16 19 C -0.24 -6.54 9.97 -15.06 -0.15 -6.69 16 20 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -27.37 13.06 55.49 0.72 -26.64 16 23 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C -0.17 -2.63 7.44 -25.83 -0.19 -2.82 16 28 C -0.14 -1.26 6.41 -26.74 -0.17 -1.43 16 29 C 0.53 6.04 7.74 -10.86 -0.08 5.96 16 30 O -0.51 -8.02 17.53 5.55 0.10 -7.92 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.79 7.92 -51.93 -0.41 0.37 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.80 6.96 -51.93 -0.36 0.44 16 40 H 0.40 3.52 8.47 -40.82 -0.35 3.18 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 45 H 0.38 9.71 7.90 -40.82 -0.32 9.39 16 46 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.07 0.95 7.92 -51.93 -0.41 0.54 16 48 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.11 0.96 7.89 -51.93 -0.41 0.55 16 LS Contribution 413.24 15.07 6.23 6.23 Total: -1.00 -34.79 413.24 -8.56 -43.35 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -8.55 Total: 8.21 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -0.64 Total: 2.23 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.39 Total: -57.44 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.18 Total: -19.48 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.79 -8.56 -43.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086381399.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.238 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds