Wall clock time and date at job start Sat Apr 11 2020 05:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47195 * 64.99855 * 4 3 2 6 6 C 1.46772 * 124.34753 * 90.00149 * 5 4 3 7 7 C 1.54476 * 105.47322 * 197.01830 * 6 5 4 8 8 H 1.09004 * 110.96998 * 92.73600 * 7 6 5 9 9 C 1.50701 * 110.97128 * 216.46250 * 7 6 5 10 10 O 1.21286 * 119.99948 * 0.02562 * 9 7 6 11 11 N 1.34772 * 120.00178 * 179.97438 * 9 7 6 12 12 C 1.46502 * 119.99833 * 180.02562 * 11 9 7 13 13 C 1.53006 * 109.47009 * 180.02562 * 12 11 9 14 14 H 1.09004 * 112.84778 * 45.33617 * 13 12 11 15 15 C 1.53778 * 113.61428 * 176.52721 * 13 12 11 16 16 C 1.53777 * 87.08080 * 139.98110 * 15 13 12 17 17 H 1.09003 * 113.62179 * 219.93814 * 16 15 13 18 18 N 1.46505 * 113.61375 * 89.11706 * 16 15 13 19 19 C 1.36940 * 120.00021 * 155.00215 * 18 16 15 20 20 H 1.08003 * 120.00003 * 0.02562 * 19 18 16 21 21 C 1.38809 * 119.99798 * 179.97438 * 19 18 16 22 22 N 1.31622 * 120.00041 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99918 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47110 * 90.00232 * 23 21 19 25 25 H 1.48500 * 109.46996 * 210.00538 * 23 21 19 26 26 H 1.48507 * 109.47019 * 330.00216 * 23 21 19 27 27 C 1.53781 * 113.61565 * 274.13764 * 13 12 11 28 28 C 1.54629 * 101.76589 * 334.58447 * 7 6 5 29 29 C 1.34417 * 124.35563 * 269.70389 * 5 4 3 30 30 O 1.21287 * 124.93778 * 359.57042 * 29 5 4 31 31 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 32 32 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 33 33 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 35 35 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 36 36 H 1.09001 * 109.47630 * 185.00204 * 4 3 2 37 37 H 1.09004 * 109.47346 * 305.00335 * 4 3 2 38 38 H 1.08997 * 110.24467 * 316.01884 * 6 5 4 39 39 H 1.08997 * 110.24349 * 77.93227 * 6 5 4 40 40 H 0.96997 * 120.00441 * 0.02562 * 11 9 7 41 41 H 1.09002 * 109.47253 * 300.00458 * 12 11 9 42 42 H 1.08997 * 109.47292 * 60.00778 * 12 11 9 43 43 H 1.08993 * 113.61878 * 254.53272 * 15 13 12 44 44 H 1.09000 * 113.61148 * 25.35305 * 15 13 12 45 45 H 0.96998 * 119.99989 * 335.00325 * 18 16 15 46 46 H 0.97003 * 119.99951 * 179.97438 * 22 21 19 47 47 H 1.09001 * 113.61434 * 334.56947 * 27 13 12 48 48 H 1.09001 * 113.61155 * 105.46936 * 27 13 12 49 49 H 1.09003 * 110.48671 * 143.47678 * 28 7 6 50 50 H 1.08996 * 110.48433 * 265.98619 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.3111 1.3087 -2.4724 7 6 4.2866 0.2656 -3.6116 8 1 3.3057 0.2284 -4.0855 9 6 5.3628 0.5508 -4.6272 10 8 6.1015 1.5011 -4.4775 11 7 5.5052 -0.2506 -5.7014 12 6 6.5518 0.0264 -6.6884 13 6 6.4967 -1.0248 -7.7988 14 1 5.4827 -1.2174 -8.1493 15 6 7.5037 -0.7752 -8.9339 16 6 7.7430 -2.2942 -8.9495 17 1 8.7882 -2.5703 -9.0888 18 7 6.8385 -3.0216 -9.8434 19 6 7.2153 -4.2316 -10.3622 20 1 8.1791 -4.6499 -10.1120 21 6 6.3581 -4.9210 -11.2088 22 7 5.1833 -4.4115 -11.5133 23 14 6.8724 -6.5713 -11.9171 24 1 6.4420 -7.6585 -11.0018 25 1 6.2347 -6.7604 -13.2448 26 1 8.3494 -6.6066 -12.0678 27 6 7.2906 -2.3021 -7.4779 28 6 4.5819 -1.0448 -2.8456 29 6 4.1299 -0.7590 -1.4304 30 8 3.9327 -1.6016 -0.5806 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6886 1.8464 -0.8900 35 1 1.6887 1.8463 0.8900 36 1 3.9786 2.1764 0.0890 37 1 3.8515 0.5681 0.8409 38 1 3.5689 2.0855 -2.6563 39 1 5.3040 1.7496 -2.3842 40 1 4.9147 -1.0108 -5.8210 41 1 6.3940 1.0160 -7.1172 42 1 7.5271 -0.0081 -6.2032 43 1 7.0466 -0.3958 -9.8476 44 1 8.3752 -0.1978 -8.6252 45 1 5.9728 -2.6461 -10.0679 46 1 4.5845 -4.8931 -12.1052 47 1 8.1044 -2.1441 -6.7701 48 1 6.6616 -3.1535 -7.2180 49 1 4.0133 -1.8718 -3.2710 50 1 5.6489 -1.2664 -2.8659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086381399.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:29 Heat of formation + Delta-G solvation = -107.033734 kcal Electronic energy + Delta-G solvation = -29218.130947 eV Core-core repulsion = 25052.412924 eV Total energy + Delta-G solvation = -4165.718022 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.85560 -40.57023 -39.75042 -38.73807 -37.27285 -35.98006 -34.97580 -34.29507 -32.05905 -30.46445 -28.86886 -28.45847 -27.18853 -26.40020 -25.77148 -24.59278 -23.59319 -22.85800 -21.24645 -20.45233 -19.77780 -19.31707 -18.50167 -18.09643 -17.54495 -17.10568 -16.76278 -16.65924 -16.54685 -16.26504 -16.13140 -15.79640 -15.67422 -15.36264 -14.95564 -14.73660 -14.59738 -14.50093 -14.10830 -14.02012 -13.62357 -13.56906 -13.23929 -13.01290 -12.92265 -12.89840 -12.73027 -12.63050 -12.49294 -12.33258 -12.15756 -12.08399 -12.03842 -11.52832 -11.44767 -11.14127 -10.91009 -10.83314 -10.65823 -10.59344 -10.02790 -9.71803 -8.97616 -7.94491 -5.22043 1.49023 1.49659 1.52833 1.58027 1.60774 1.90044 2.25440 2.56642 2.90627 3.21290 3.36951 3.38655 3.70071 3.77253 3.84140 3.91654 3.95027 4.07717 4.15112 4.17999 4.21130 4.36851 4.37868 4.43652 4.45785 4.48559 4.54172 4.58155 4.63922 4.76194 4.77770 4.83454 4.84369 4.85958 4.95037 4.97029 5.03969 5.15558 5.32728 5.39556 5.51113 5.54467 5.58662 5.70380 6.08290 6.28616 6.29679 6.54594 7.16256 7.21241 7.34854 8.12729 8.34593 9.28630 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.001914 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.022845 B =14627.090150 C =15655.821514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.414 6.414 3 C 0.039 3.961 4 C 0.122 3.878 5 N -0.614 5.614 6 C 0.120 3.880 7 C -0.112 4.112 8 H 0.143 0.857 9 C 0.528 3.472 10 O -0.573 6.573 11 N -0.714 5.714 12 C 0.140 3.860 13 C -0.101 4.101 14 H 0.082 0.918 15 C -0.134 4.134 16 C 0.140 3.860 17 H 0.057 0.943 18 N -0.719 5.719 19 C -0.241 4.241 20 H 0.075 0.925 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.970 3.030 24 H -0.288 1.288 25 H -0.297 1.297 26 H -0.271 1.271 27 C -0.153 4.153 28 C -0.140 4.140 29 C 0.515 3.485 30 O -0.566 6.566 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.129 0.871 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.413 0.587 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.105 0.895 45 H 0.375 0.625 46 H 0.251 0.749 47 H 0.091 0.909 48 H 0.048 0.952 49 H 0.123 0.877 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.231 17.235 22.315 28.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.333 6.333 3 C -0.039 4.039 4 C 0.000 4.000 5 N -0.347 5.347 6 C -0.003 4.003 7 C -0.133 4.133 8 H 0.160 0.840 9 C 0.314 3.686 10 O -0.453 6.453 11 N -0.364 5.364 12 C 0.016 3.984 13 C -0.119 4.119 14 H 0.101 0.899 15 C -0.174 4.174 16 C 0.031 3.969 17 H 0.075 0.925 18 N -0.357 5.357 19 C -0.373 4.373 20 H 0.093 0.907 21 C -0.267 4.267 22 N -0.618 5.618 23 Si 0.800 3.200 24 H -0.215 1.215 25 H -0.224 1.224 26 H -0.195 1.195 27 C -0.194 4.194 28 C -0.180 4.180 29 C 0.304 3.696 30 O -0.445 6.445 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.147 0.853 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.102 0.898 40 H 0.249 0.751 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.123 0.877 45 H 0.207 0.793 46 H 0.059 0.941 47 H 0.109 0.891 48 H 0.067 0.933 49 H 0.141 0.859 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.591 17.194 22.856 29.143 hybrid contribution -0.763 -1.158 -0.778 1.590 sum -6.354 16.036 22.079 28.017 Atomic orbital electron populations 1.22829 0.80089 1.03014 1.00811 1.88028 1.20891 1.28823 1.95564 1.23152 0.93760 0.84880 1.02083 1.21650 0.92927 1.00411 0.84993 1.48314 1.66157 1.06767 1.13509 1.22035 1.03352 0.93843 0.81042 1.22186 1.00445 0.95963 0.94728 0.83971 1.20341 0.84505 0.81785 0.81939 1.90704 1.46803 1.30859 1.76911 1.45988 1.35889 1.31219 1.23352 1.21309 0.90950 0.98043 0.88059 1.22480 0.98973 0.95139 0.95358 0.89930 1.23334 0.99541 0.96801 0.97702 1.21453 0.93388 0.91956 0.90153 0.92474 1.42289 1.18341 1.20735 1.54378 1.19657 1.00485 0.96238 1.20885 0.90676 1.25518 0.96877 1.02562 1.01786 1.69800 1.10085 1.40558 1.41401 0.85182 0.77722 0.80034 0.77078 1.21538 1.22351 1.19545 1.23729 0.99874 0.96875 0.98910 1.22315 1.04852 0.98691 0.92166 1.21071 0.75782 0.82623 0.90171 1.90714 1.52979 1.50602 1.50227 0.92817 0.93238 0.90127 0.91777 0.90281 0.85303 0.91042 0.87513 0.89787 0.75091 0.91487 0.91337 0.92431 0.87670 0.79297 0.94058 0.89108 0.93336 0.85928 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.62 16 2 O -0.41 -8.16 10.32 -148.98 -1.54 -9.69 16 3 C 0.04 0.46 6.28 71.98 0.45 0.91 16 4 C 0.12 1.57 6.33 86.38 0.55 2.11 16 5 N -0.61 -10.08 2.90 -817.98 -2.37 -12.45 16 6 C 0.12 1.51 6.71 86.83 0.58 2.09 16 7 C -0.11 -1.45 3.55 -10.48 -0.04 -1.48 16 8 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 9 C 0.53 9.74 7.06 87.66 0.62 10.36 16 10 O -0.57 -14.53 15.51 -3.05 -0.05 -14.58 16 11 N -0.71 -12.78 5.56 -463.05 -2.57 -15.36 16 12 C 0.14 2.95 5.50 86.38 0.47 3.42 16 13 C -0.10 -2.57 3.62 -10.27 -0.04 -2.61 16 14 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 15 C -0.13 -3.82 7.39 31.12 0.23 -3.59 16 16 C 0.14 5.13 4.57 45.57 0.21 5.34 16 17 H 0.06 2.12 8.10 -2.39 -0.02 2.10 16 18 N -0.72 -34.56 5.31 -320.16 -1.70 -36.26 16 19 C -0.24 -13.01 9.97 84.03 0.84 -12.18 16 20 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 21 C -0.08 -4.22 5.50 84.86 0.47 -3.75 16 22 N -0.97 -57.76 13.06 21.65 0.28 -57.48 16 23 Si 0.97 45.40 29.55 68.60 2.03 47.42 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 27 C -0.15 -4.54 7.44 31.18 0.23 -4.30 16 28 C -0.14 -2.24 6.41 30.59 0.20 -2.05 16 29 C 0.52 11.63 7.74 87.90 0.68 12.31 16 30 O -0.57 -18.16 17.53 -3.05 -0.05 -18.21 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 1.23 7.92 -2.39 -0.02 1.21 16 38 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 1.28 6.96 -2.39 -0.02 1.26 16 40 H 0.41 6.20 8.47 -92.71 -0.79 5.42 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.49 7.88 -2.39 -0.02 1.47 16 43 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.10 2.42 8.10 -2.39 -0.02 2.40 16 45 H 0.37 19.23 7.90 -92.71 -0.73 18.50 16 46 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 47 H 0.09 2.29 7.92 -2.39 -0.02 2.28 16 48 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.11 1.77 7.89 -2.39 -0.02 1.75 16 Total: -1.00 -76.92 413.24 0.16 -76.76 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: -0.57 Total: 31.62 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 6.70 Total: 8.22 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -6.36 Total: -121.54 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -1.64 Total: -42.48 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -76.92 0.16 -76.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086381399.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.274 kcal (2) G-P(sol) polarization free energy of solvation -76.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds