Wall clock time and date at job start Sat Apr 11 2020 05:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99742 * 2 1 4 4 C 1.52998 * 109.47084 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47133 * 64.99910 * 4 3 2 6 6 C 1.46772 * 124.34898 * 269.72842 * 5 4 3 7 7 C 1.54661 * 105.38161 * 162.85387 * 6 5 4 8 8 H 1.08998 * 111.19445 * 267.59333 * 7 6 5 9 9 C 1.50698 * 110.85357 * 143.78713 * 7 6 5 10 10 O 1.21282 * 120.00186 * 6.33346 * 9 7 6 11 11 N 1.34776 * 119.99947 * 186.32575 * 9 7 6 12 12 C 1.46500 * 120.00063 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47214 * 180.02562 * 12 11 9 14 14 H 1.09007 * 112.84693 * 43.81564 * 13 12 11 15 15 C 1.53778 * 113.61411 * 175.00300 * 13 12 11 16 16 C 1.53782 * 87.08235 * 139.98668 * 15 13 12 17 17 H 1.08997 * 113.61490 * 220.01942 * 16 15 13 18 18 N 1.46500 * 113.61177 * 89.19886 * 16 15 13 19 19 C 1.36940 * 119.99880 * 155.00207 * 18 16 15 20 20 H 1.08010 * 119.99632 * 359.97438 * 19 18 16 21 21 C 1.38809 * 120.00133 * 180.02562 * 19 18 16 22 22 N 1.31617 * 120.00274 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00024 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47133 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47332 * 119.99688 * 23 21 19 26 26 H 1.48501 * 109.47227 * 239.99980 * 23 21 19 27 27 C 1.53776 * 113.61838 * 272.50570 * 13 12 11 28 28 C 1.54636 * 101.68513 * 25.76321 * 7 6 5 29 29 C 1.34416 * 124.35006 * 90.02710 * 5 4 3 30 30 O 1.21277 * 124.94268 * 0.38399 * 29 5 4 31 31 H 1.09001 * 109.47103 * 60.00503 * 1 2 3 32 32 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47187 * 300.00063 * 1 2 3 34 34 H 1.08997 * 109.47450 * 299.99752 * 3 2 1 35 35 H 1.09003 * 109.47048 * 59.99889 * 3 2 1 36 36 H 1.09000 * 109.47569 * 185.00181 * 4 3 2 37 37 H 1.09008 * 109.47275 * 304.99847 * 4 3 2 38 38 H 1.09005 * 110.23979 * 281.97842 * 6 5 4 39 39 H 1.08998 * 110.24716 * 43.98083 * 6 5 4 40 40 H 0.97004 * 119.99748 * 0.02562 * 11 9 7 41 41 H 1.08996 * 109.47820 * 300.01048 * 12 11 9 42 42 H 1.09004 * 109.46674 * 60.00964 * 12 11 9 43 43 H 1.08998 * 113.61926 * 254.53468 * 15 13 12 44 44 H 1.09002 * 113.61216 * 25.35496 * 15 13 12 45 45 H 0.97000 * 120.00677 * 335.00566 * 18 16 15 46 46 H 0.96999 * 120.00358 * 180.02562 * 22 21 19 47 47 H 1.09002 * 113.61559 * 334.56368 * 27 13 12 48 48 H 1.08999 * 113.61695 * 105.47630 * 27 13 12 49 49 H 1.08994 * 110.48610 * 216.30909 * 28 7 6 50 50 H 1.09001 * 110.48421 * 93.66841 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2508 6 6 4.1447 -0.8812 -1.4442 7 6 4.1818 -1.0884 -2.9765 8 1 3.1874 -1.2993 -3.3698 9 6 5.1486 -2.1836 -3.3464 10 8 5.6807 -2.8418 -2.4777 11 7 5.4218 -2.4319 -4.6426 12 6 6.3620 -3.4962 -5.0022 13 6 6.4930 -3.5681 -6.5249 14 1 6.5825 -2.5858 -6.9888 15 6 7.5514 -4.5749 -7.0053 16 6 6.5670 -4.9567 -8.1234 17 1 6.5334 -6.0266 -8.3291 18 7 6.7145 -4.1485 -9.3364 19 6 6.3171 -4.6512 -10.5466 20 1 5.8952 -5.6437 -10.6068 21 6 6.4574 -3.8857 -11.6960 22 7 6.9719 -2.6765 -11.6227 23 14 5.9145 -4.5712 -13.3467 24 1 5.3729 -5.9412 -13.1599 25 1 4.8620 -3.6968 -13.9239 26 1 7.0775 -4.6207 -14.2688 27 6 5.4433 -4.4729 -7.1915 28 6 4.6903 0.2873 -3.4663 29 6 4.2852 1.2453 -2.3677 30 8 4.2442 2.4522 -2.4788 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 1.6885 1.8464 0.8900 36 1 3.9784 2.1766 0.0902 37 1 3.8508 0.5686 0.8428 38 1 5.0786 -1.2160 -0.9928 39 1 3.3015 -1.4201 -1.0122 40 1 4.9964 -1.9053 -5.3374 41 1 7.3369 -3.2834 -4.5637 42 1 5.9936 -4.4497 -4.6235 43 1 8.4658 -4.1068 -7.3697 44 1 7.7419 -5.3801 -6.2957 45 1 7.0938 -3.2574 -9.2824 46 1 7.0696 -2.1414 -12.4258 47 1 5.0565 -5.2510 -6.5335 48 1 4.6560 -3.9224 -7.7063 49 1 4.2096 0.5592 -4.4060 50 1 5.7742 0.2747 -3.5809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086381400.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:32 Heat of formation + Delta-G solvation = -83.809325 kcal Electronic energy + Delta-G solvation = -29202.534358 eV Core-core repulsion = 25037.823422 eV Total energy + Delta-G solvation = -4164.710936 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.12009 -39.62071 -38.54970 -38.22656 -36.45836 -34.76912 -33.78427 -33.17991 -30.35519 -29.71494 -28.04442 -27.43041 -26.66339 -25.10038 -24.13854 -23.52640 -22.99949 -21.68418 -20.36045 -19.74905 -18.48928 -17.72175 -17.50219 -17.24505 -16.90023 -16.27371 -16.08974 -15.86410 -15.61756 -15.33789 -14.94574 -14.81521 -14.31106 -14.09800 -14.06608 -13.83285 -13.57516 -13.41043 -13.00885 -12.94281 -12.73968 -12.52964 -12.36457 -12.31890 -11.97383 -11.85503 -11.71445 -11.54513 -11.42607 -11.07362 -10.88665 -10.53394 -10.40682 -10.19141 -10.14834 -10.02815 -9.81562 -9.72919 -9.50528 -9.10704 -9.02947 -8.92192 -7.03484 -5.84037 -3.13194 2.25164 2.42237 2.56410 3.05649 3.31545 3.39343 3.45437 3.47498 3.92194 4.02269 4.45942 4.52788 4.52941 4.56472 4.68940 4.79086 4.85635 4.92541 4.95808 5.00427 5.04764 5.06810 5.18709 5.21908 5.25479 5.28627 5.33970 5.42063 5.47395 5.57407 5.60915 5.65935 5.82219 5.90793 6.06244 6.14635 6.17209 6.32597 6.33922 6.54894 6.61385 6.70439 6.78588 6.85517 7.00276 7.37779 7.66519 7.83594 8.04967 8.35103 9.45948 10.03260 10.37278 11.38360 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016411 B = 0.001871 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.801536 B =14961.846498 C =15384.492161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.042 3.958 4 C 0.129 3.871 5 N -0.613 5.613 6 C 0.122 3.878 7 C -0.124 4.124 8 H 0.119 0.881 9 C 0.524 3.476 10 O -0.540 6.540 11 N -0.719 5.719 12 C 0.130 3.870 13 C -0.120 4.120 14 H 0.093 0.907 15 C -0.148 4.148 16 C 0.167 3.833 17 H 0.062 0.938 18 N -0.706 5.706 19 C -0.242 4.242 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.168 4.168 28 C -0.147 4.147 29 C 0.520 3.480 30 O -0.532 6.532 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.404 0.596 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.068 0.932 48 H 0.066 0.934 49 H 0.112 0.888 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.727 5.609 25.397 27.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.036 4.036 4 C 0.007 3.993 5 N -0.347 5.347 6 C -0.001 4.001 7 C -0.146 4.146 8 H 0.137 0.863 9 C 0.308 3.692 10 O -0.417 6.417 11 N -0.369 5.369 12 C 0.007 3.993 13 C -0.139 4.139 14 H 0.112 0.888 15 C -0.188 4.188 16 C 0.055 3.945 17 H 0.080 0.920 18 N -0.344 5.344 19 C -0.373 4.373 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.209 4.209 28 C -0.187 4.187 29 C 0.308 3.692 30 O -0.409 6.409 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.239 0.761 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.085 0.915 49 H 0.131 0.869 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.314 5.522 25.842 28.019 hybrid contribution -0.732 0.500 -1.246 1.529 sum -10.046 6.022 24.596 27.243 Atomic orbital electron populations 1.22747 0.80877 1.02893 0.99959 1.87881 1.19832 1.27525 1.95436 1.23051 0.94231 0.85303 1.00982 1.21437 0.92118 0.99882 0.85850 1.48221 1.66404 1.07966 1.12105 1.22026 1.04188 0.80071 0.93784 1.22286 1.00830 0.93927 0.97552 0.86272 1.20042 0.82086 0.84129 0.82901 1.90714 1.52213 1.50238 1.48563 1.46059 1.46417 1.37370 1.07089 1.21523 0.92287 0.89917 0.95563 1.22716 0.99547 0.99663 0.91935 0.88839 1.23447 0.97910 0.98170 0.99247 1.21053 0.92283 0.95188 0.86014 0.91981 1.42175 1.73810 1.16952 1.01482 1.19335 1.33947 0.99315 0.84740 0.90932 1.24769 1.01670 0.96466 0.98000 1.69665 1.50442 1.09859 1.28028 0.86103 0.77803 0.78007 0.84172 1.20493 1.21833 1.21829 1.23890 0.98509 0.98808 0.99734 1.22369 1.04411 0.92527 0.99403 1.20794 0.76036 0.88165 0.84205 1.90737 1.53917 1.13568 1.82676 0.94078 0.89485 0.94111 0.92732 0.92129 0.88284 0.89160 0.89293 0.88852 0.76133 0.91705 0.91417 0.91322 0.90459 0.78113 0.93465 0.91390 0.91501 0.86923 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.07 9.92 -35.23 -0.35 -3.42 16 3 C 0.04 0.29 6.28 37.16 0.23 0.52 16 4 C 0.13 0.92 6.32 -4.04 -0.03 0.90 16 5 N -0.61 -5.47 2.88 -172.29 -0.50 -5.97 16 6 C 0.12 1.03 6.59 -3.02 -0.02 1.01 16 7 C -0.12 -1.00 3.56 -90.04 -0.32 -1.32 16 8 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 9 C 0.52 5.63 7.07 -10.99 -0.08 5.55 16 10 O -0.54 -7.66 15.57 5.56 0.09 -7.58 16 11 N -0.72 -7.42 5.50 -60.30 -0.33 -7.76 16 12 C 0.13 1.56 5.51 -4.04 -0.02 1.54 16 13 C -0.12 -1.65 3.63 -89.81 -0.33 -1.98 16 14 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 15 C -0.15 -2.25 7.39 -25.92 -0.19 -2.44 16 16 C 0.17 3.12 4.56 -67.11 -0.31 2.81 16 17 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 18 N -0.71 -16.88 5.31 -52.63 -0.28 -17.16 16 19 C -0.24 -6.52 9.97 -15.06 -0.15 -6.67 16 20 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.40 13.06 55.49 0.72 -26.67 16 23 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 C -0.17 -2.62 7.43 -25.92 -0.19 -2.81 16 28 C -0.15 -1.22 6.37 -26.74 -0.17 -1.39 16 29 C 0.52 5.61 8.02 -10.86 -0.09 5.52 16 30 O -0.53 -7.63 17.59 5.56 0.10 -7.53 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 0.69 7.92 -51.93 -0.41 0.28 16 37 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.09 0.85 7.07 -51.93 -0.37 0.48 16 39 H 0.09 0.77 7.47 -51.93 -0.39 0.38 16 40 H 0.40 3.55 8.47 -40.82 -0.35 3.21 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.85 7.85 -51.93 -0.41 0.44 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.08 1.02 8.10 -51.93 -0.42 0.59 16 45 H 0.38 9.74 7.90 -40.82 -0.32 9.42 16 46 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.07 0.95 7.90 -51.93 -0.41 0.54 16 48 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 49 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.11 0.92 7.89 -51.93 -0.41 0.51 16 LS Contribution 412.43 15.07 6.22 6.22 Total: -1.00 -33.80 412.43 -8.52 -42.32 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -8.52 Total: 8.60 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -0.64 Total: 2.08 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.38 Total: -57.56 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.17 Total: -18.53 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.80 -8.52 -42.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086381400.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.488 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds