Wall clock time and date at job start Sat Apr 11 2020 05:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99640 * 2 1 4 4 H 1.08997 * 109.47174 * 330.30669 * 3 2 1 5 5 C 1.50702 * 109.47188 * 90.30930 * 3 2 1 6 6 O 1.21277 * 119.99730 * 4.99845 * 5 3 2 7 7 N 1.34779 * 119.99780 * 185.00086 * 5 3 2 8 8 C 1.46499 * 119.99980 * 179.97438 * 7 5 3 9 9 C 1.53000 * 109.47462 * 179.97438 * 8 7 5 10 10 C 1.53782 * 113.61502 * 274.14101 * 9 8 7 11 11 C 1.53947 * 87.01760 * 220.04608 * 10 9 8 12 12 N 1.46900 * 113.74405 * 139.94491 * 11 10 9 13 13 C 1.46903 * 111.00131 * 107.39895 * 12 11 10 14 14 C 1.50697 * 109.46908 * 180.02562 * 13 12 11 15 15 O 1.21290 * 120.00529 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99721 * 180.02562 * 14 13 12 17 17 C 1.37107 * 119.99846 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99785 * 0.02562 * 17 16 14 19 19 C 1.38943 * 119.99781 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00560 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47004 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47238 * 120.00121 * 21 19 17 24 24 H 1.48496 * 109.46997 * 240.00073 * 21 19 17 25 25 C 1.53778 * 87.11508 * 25.36335 * 11 10 9 26 26 C 1.53005 * 109.46971 * 210.30654 * 3 2 1 27 27 C 1.52999 * 117.49447 * 129.59816 * 26 3 2 28 28 C 1.52999 * 117.49642 * 60.93953 * 26 3 2 29 29 H 1.09001 * 109.46895 * 175.51156 * 1 2 3 30 30 H 1.09002 * 109.47524 * 295.50765 * 1 2 3 31 31 H 1.08995 * 109.47328 * 55.51306 * 1 2 3 32 32 H 0.97002 * 119.99961 * 359.97438 * 7 5 3 33 33 H 1.08993 * 109.47455 * 300.00400 * 8 7 5 34 34 H 1.09011 * 109.46828 * 59.99900 * 8 7 5 35 35 H 1.09001 * 112.84622 * 45.33055 * 9 8 7 36 36 H 1.09000 * 113.61421 * 334.56657 * 10 9 8 37 37 H 1.08999 * 113.61684 * 105.46560 * 10 9 8 38 38 H 1.08999 * 113.53877 * 270.80666 * 11 10 9 39 39 H 1.00909 * 110.99916 * 343.44694 * 12 11 10 40 40 H 1.08996 * 109.47146 * 300.00182 * 13 12 11 41 41 H 1.08997 * 109.46921 * 60.00499 * 13 12 11 42 42 H 0.96998 * 120.00430 * 0.02562 * 16 14 13 43 43 H 0.96997 * 120.00349 * 179.97438 * 20 19 17 44 44 H 1.09002 * 113.61733 * 220.09527 * 25 11 10 45 45 H 1.08997 * 113.61348 * 89.18562 * 25 11 10 46 46 H 1.08991 * 115.54955 * 275.26522 * 26 3 2 47 47 H 1.09000 * 117.50694 * 359.97438 * 27 26 3 48 48 H 1.08996 * 117.49898 * 145.02481 * 27 26 3 49 49 H 1.08996 * 117.49464 * 214.97902 * 28 26 3 50 50 H 1.09001 * 117.50186 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3423 2.0005 -0.5090 5 6 2.2214 1.7613 1.4208 6 8 1.9906 1.0055 2.3407 7 7 2.6669 3.0089 1.6690 8 6 2.8718 3.4523 3.0502 9 6 3.3778 4.8962 3.0527 10 6 4.9038 5.0144 2.9045 11 6 4.8369 6.1447 3.9475 12 7 5.9380 6.1187 4.9195 13 6 6.8897 7.2088 4.6662 14 6 8.0029 7.1494 5.6802 15 8 8.0038 6.2839 6.5300 16 7 8.9976 8.0581 5.6429 17 6 10.0107 8.0037 6.5651 18 1 10.0118 7.2326 7.3212 19 6 11.0358 8.9408 6.5269 20 7 11.0348 9.8789 5.6066 21 14 12.4158 8.8673 7.7839 22 1 12.1855 7.7261 8.7056 23 1 13.7132 8.6855 7.0846 24 1 12.4454 10.1324 8.5609 25 6 3.5453 5.4878 4.4622 26 6 3.3553 1.2649 -0.7280 27 6 3.5985 2.3071 -1.8214 28 6 3.3500 0.8447 -2.1991 29 1 -0.3633 -1.0245 -0.0804 30 1 -0.3634 0.4425 0.9275 31 1 -0.3634 0.5818 -0.8470 32 1 2.8518 3.6133 0.9332 33 1 1.9285 3.3965 3.5935 34 1 3.6076 2.8089 3.5329 35 1 2.8217 5.5406 2.3718 36 1 5.4456 4.1337 3.2493 37 1 5.2221 5.3485 1.9170 38 1 4.6810 7.1312 3.5109 39 1 6.4038 5.2235 4.9143 40 1 7.3054 7.1027 3.6642 41 1 6.3752 8.1663 4.7467 42 1 8.9968 8.7505 4.9636 43 1 11.7502 10.5333 5.5802 44 1 2.7682 6.2036 4.7304 45 1 3.7149 4.7367 5.2337 46 1 4.2091 0.9632 -0.1214 47 1 2.8001 3.0215 -2.0225 48 1 4.6124 2.6907 -1.9345 49 1 4.2005 0.2668 -2.5604 50 1 2.3883 0.5967 -2.6483 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100295323.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:40 Heat of formation + Delta-G solvation = -72.070049 kcal Electronic energy + Delta-G solvation = -28565.439543 eV Core-core repulsion = 24401.237660 eV Total energy + Delta-G solvation = -4164.201883 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.59882 -39.53619 -38.21674 -37.92776 -36.84355 -35.05120 -34.03752 -33.18115 -31.20500 -29.91418 -27.98021 -26.61550 -25.85284 -25.72459 -24.02240 -22.87363 -22.04983 -21.53587 -20.83254 -19.89405 -19.08420 -18.05602 -17.86242 -17.29861 -16.43624 -16.13421 -16.06753 -15.71231 -15.38095 -15.20844 -14.99835 -14.66127 -14.49349 -14.28751 -14.06415 -13.85930 -13.56745 -13.30495 -13.08242 -12.57866 -12.53576 -12.36828 -12.12362 -12.08162 -11.80897 -11.69924 -11.55333 -11.53179 -11.18967 -11.07403 -11.02765 -10.96523 -10.71092 -10.61627 -10.48968 -10.34146 -10.21975 -9.59270 -9.52107 -9.34492 -8.44461 -8.01534 -7.94794 -6.41964 -3.82700 2.24501 2.65746 2.96412 3.16414 3.27027 3.34572 3.67891 3.90961 4.06972 4.09683 4.25012 4.29435 4.32834 4.37618 4.43234 4.51230 4.63396 4.70407 4.78997 4.85944 4.95688 4.99292 5.06011 5.13313 5.18684 5.25786 5.27827 5.29607 5.39313 5.45228 5.57527 5.60678 5.63162 5.66877 5.70194 5.79943 5.87224 5.97843 6.02592 6.14830 6.21457 6.33572 6.53637 7.16864 7.27994 7.55433 7.67283 7.90420 8.06779 8.61276 9.18061 9.54379 10.05878 10.75851 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020722 B = 0.001597 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.926130 B =17524.422635 C =18103.803951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.106 3.894 4 H 0.085 0.915 5 C 0.491 3.509 6 O -0.524 6.524 7 N -0.723 5.723 8 C 0.130 3.870 9 C -0.124 4.124 10 C -0.165 4.165 11 C 0.069 3.931 12 N -0.657 5.657 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.583 6.583 16 N -0.564 5.564 17 C -0.299 4.299 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.281 1.281 25 C -0.116 4.116 26 C -0.157 4.157 27 C -0.171 4.171 28 C -0.158 4.158 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.400 0.600 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.352 0.648 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.115 0.885 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.100 0.900 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.868 -11.324 -19.336 30.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.270 6.270 3 C 0.045 3.955 4 H 0.102 0.898 5 C 0.276 3.724 6 O -0.399 6.399 7 N -0.377 5.377 8 C 0.007 3.993 9 C -0.144 4.144 10 C -0.204 4.204 11 C -0.043 4.043 12 N -0.289 5.289 13 C -0.082 4.082 14 C 0.225 3.775 15 O -0.467 6.467 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.155 4.155 26 C -0.176 4.176 27 C -0.208 4.208 28 C -0.195 4.195 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.234 0.766 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.172 0.828 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.109 0.891 46 H 0.133 0.867 47 H 0.116 0.884 48 H 0.123 0.877 49 H 0.118 0.882 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.117 -12.146 -17.603 30.055 hybrid contribution 1.080 0.757 -0.964 1.633 sum -20.038 -11.389 -18.567 29.596 Atomic orbital electron populations 1.22899 0.80551 1.03306 1.00102 1.88026 1.19964 1.24684 1.94326 1.21528 0.95009 0.86914 0.92096 0.89762 1.21252 0.77416 0.81857 0.91924 1.90735 1.49758 1.53428 1.46007 1.46031 1.67856 1.14379 1.09411 1.21411 1.01316 0.94299 0.82288 1.22659 0.96713 0.95120 0.99859 1.23864 0.95504 1.00440 1.00575 1.23020 0.92663 0.97588 0.90989 1.60018 1.11929 1.07381 1.49523 1.21712 0.93576 0.95988 0.96956 1.19855 0.84433 0.85065 0.88111 1.90527 1.78284 1.38161 1.39752 1.41878 1.20914 1.27435 1.29892 1.19766 0.99973 1.13465 1.09631 0.87863 1.25259 0.99089 0.95585 0.98031 1.69617 1.34286 1.16440 1.34031 0.85800 0.80155 0.78310 0.80084 1.19211 1.20784 1.20744 1.23053 0.97375 0.99999 0.95100 1.22114 0.96757 1.06709 0.92013 1.23133 1.03663 0.92562 1.01473 1.22873 1.03727 0.97158 0.95770 0.89045 0.93591 0.93989 0.76561 0.91362 0.91079 0.88751 0.89588 0.91510 0.88662 0.82771 0.93884 0.89655 0.77484 0.91948 0.91081 0.89116 0.86692 0.88394 0.87750 0.88172 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.87 101.05 1.10 1.29 16 2 O -0.35 -3.49 9.81 -55.09 -0.54 -4.03 16 3 C 0.11 0.83 2.71 -27.88 -0.08 0.75 16 4 H 0.08 0.44 7.48 -51.93 -0.39 0.05 16 5 C 0.49 5.06 7.12 -10.98 -0.08 4.98 16 6 O -0.52 -7.82 16.51 -14.30 -0.24 -8.06 16 7 N -0.72 -5.61 5.52 -60.29 -0.33 -5.94 16 8 C 0.13 1.15 5.50 -4.04 -0.02 1.13 16 9 C -0.12 -0.96 3.75 -89.81 -0.34 -1.29 16 10 C -0.16 -1.50 7.26 -25.83 -0.19 -1.69 16 11 C 0.07 0.77 4.18 -66.81 -0.28 0.49 16 12 N -0.66 -10.34 6.25 -107.04 -0.67 -11.01 16 13 C 0.05 0.87 6.01 -4.98 -0.03 0.84 16 14 C 0.44 10.39 7.82 -10.99 -0.09 10.31 16 15 O -0.58 -15.96 15.78 5.55 0.09 -15.87 16 16 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 17 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 18 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.51 13.05 55.50 0.72 -23.78 16 21 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 C -0.12 -1.14 7.44 -25.92 -0.19 -1.34 16 26 C -0.16 -1.05 5.34 -90.62 -0.48 -1.54 16 27 C -0.17 -0.75 10.18 -26.69 -0.27 -1.02 16 28 C -0.16 -0.86 10.17 -26.69 -0.27 -1.13 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.04 0.20 7.98 -51.93 -0.41 -0.22 16 32 H 0.40 2.05 8.47 -40.82 -0.35 1.70 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.76 7.87 -51.92 -0.41 0.35 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.88 7.61 -51.93 -0.40 0.48 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.99 7.87 -51.93 -0.41 0.59 16 39 H 0.35 5.79 7.91 -39.29 -0.31 5.48 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 42 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 43 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 46 H 0.11 0.91 8.11 -51.93 -0.42 0.49 16 47 H 0.10 0.29 8.05 -51.93 -0.42 -0.12 16 48 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 418.97 15.07 6.31 6.31 Total: -1.00 -34.88 418.97 -9.61 -44.49 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -8.42 Total: 12.43 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -1.46 Total: 3.76 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.33 Total: -55.11 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.69 Total: -27.96 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -34.88 -9.61 -44.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100295323.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.581 kcal (2) G-P(sol) polarization free energy of solvation -34.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds