Wall clock time and date at job start Sat Apr 11 2020 05:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99640 * 2 1 4 4 H 1.08997 * 109.47174 * 330.30669 * 3 2 1 5 5 C 1.50702 * 109.47188 * 90.30930 * 3 2 1 6 6 O 1.21277 * 119.99730 * 4.99845 * 5 3 2 7 7 N 1.34779 * 119.99780 * 185.00086 * 5 3 2 8 8 C 1.46499 * 119.99980 * 179.97438 * 7 5 3 9 9 C 1.53000 * 109.47462 * 179.97438 * 8 7 5 10 10 C 1.53782 * 113.61502 * 274.14101 * 9 8 7 11 11 C 1.53947 * 87.01760 * 220.04608 * 10 9 8 12 12 N 1.46900 * 113.74405 * 139.94491 * 11 10 9 13 13 C 1.46903 * 111.00131 * 107.39895 * 12 11 10 14 14 C 1.50697 * 109.46908 * 180.02562 * 13 12 11 15 15 O 1.21290 * 120.00529 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99721 * 180.02562 * 14 13 12 17 17 C 1.37107 * 119.99846 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99785 * 0.02562 * 17 16 14 19 19 C 1.38943 * 119.99781 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00560 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47004 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47238 * 120.00121 * 21 19 17 24 24 H 1.48496 * 109.46997 * 240.00073 * 21 19 17 25 25 C 1.53778 * 87.11508 * 25.36335 * 11 10 9 26 26 C 1.53005 * 109.46971 * 210.30654 * 3 2 1 27 27 C 1.52999 * 117.49447 * 129.59816 * 26 3 2 28 28 C 1.52999 * 117.49642 * 60.93953 * 26 3 2 29 29 H 1.09001 * 109.46895 * 175.51156 * 1 2 3 30 30 H 1.09002 * 109.47524 * 295.50765 * 1 2 3 31 31 H 1.08995 * 109.47328 * 55.51306 * 1 2 3 32 32 H 0.97002 * 119.99961 * 359.97438 * 7 5 3 33 33 H 1.08993 * 109.47455 * 300.00400 * 8 7 5 34 34 H 1.09011 * 109.46828 * 59.99900 * 8 7 5 35 35 H 1.09001 * 112.84622 * 45.33055 * 9 8 7 36 36 H 1.09000 * 113.61421 * 334.56657 * 10 9 8 37 37 H 1.08999 * 113.61684 * 105.46560 * 10 9 8 38 38 H 1.08999 * 113.53877 * 270.80666 * 11 10 9 39 39 H 1.00909 * 110.99916 * 343.44694 * 12 11 10 40 40 H 1.08996 * 109.47146 * 300.00182 * 13 12 11 41 41 H 1.08997 * 109.46921 * 60.00499 * 13 12 11 42 42 H 0.96998 * 120.00430 * 0.02562 * 16 14 13 43 43 H 0.96997 * 120.00349 * 179.97438 * 20 19 17 44 44 H 1.09002 * 113.61733 * 220.09527 * 25 11 10 45 45 H 1.08997 * 113.61348 * 89.18562 * 25 11 10 46 46 H 1.08991 * 115.54955 * 275.26522 * 26 3 2 47 47 H 1.09000 * 117.50694 * 359.97438 * 27 26 3 48 48 H 1.08996 * 117.49898 * 145.02481 * 27 26 3 49 49 H 1.08996 * 117.49464 * 214.97902 * 28 26 3 50 50 H 1.09001 * 117.50186 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3423 2.0005 -0.5090 5 6 2.2214 1.7613 1.4208 6 8 1.9906 1.0055 2.3407 7 7 2.6669 3.0089 1.6690 8 6 2.8718 3.4523 3.0502 9 6 3.3778 4.8962 3.0527 10 6 4.9038 5.0144 2.9045 11 6 4.8369 6.1447 3.9475 12 7 5.9380 6.1187 4.9195 13 6 6.8897 7.2088 4.6662 14 6 8.0029 7.1494 5.6802 15 8 8.0038 6.2839 6.5300 16 7 8.9976 8.0581 5.6429 17 6 10.0107 8.0037 6.5651 18 1 10.0118 7.2326 7.3212 19 6 11.0358 8.9408 6.5269 20 7 11.0348 9.8789 5.6066 21 14 12.4158 8.8673 7.7839 22 1 12.1855 7.7261 8.7056 23 1 13.7132 8.6855 7.0846 24 1 12.4454 10.1324 8.5609 25 6 3.5453 5.4878 4.4622 26 6 3.3553 1.2649 -0.7280 27 6 3.5985 2.3071 -1.8214 28 6 3.3500 0.8447 -2.1991 29 1 -0.3633 -1.0245 -0.0804 30 1 -0.3634 0.4425 0.9275 31 1 -0.3634 0.5818 -0.8470 32 1 2.8518 3.6133 0.9332 33 1 1.9285 3.3965 3.5935 34 1 3.6076 2.8089 3.5329 35 1 2.8217 5.5406 2.3718 36 1 5.4456 4.1337 3.2493 37 1 5.2221 5.3485 1.9170 38 1 4.6810 7.1312 3.5109 39 1 6.4038 5.2235 4.9143 40 1 7.3054 7.1027 3.6642 41 1 6.3752 8.1663 4.7467 42 1 8.9968 8.7505 4.9636 43 1 11.7502 10.5333 5.5802 44 1 2.7682 6.2036 4.7304 45 1 3.7149 4.7367 5.2337 46 1 4.2091 0.9632 -0.1214 47 1 2.8001 3.0215 -2.0225 48 1 4.6124 2.6907 -1.9345 49 1 4.2005 0.2668 -2.5604 50 1 2.3883 0.5967 -2.6483 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100295323.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:39 Heat of formation + Delta-G solvation = -98.285396 kcal Electronic energy + Delta-G solvation = -28566.576326 eV Core-core repulsion = 24401.237660 eV Total energy + Delta-G solvation = -4165.338666 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.33708 -40.49816 -39.80809 -38.74388 -37.35638 -36.20490 -35.77109 -34.41114 -33.23853 -30.61431 -28.92514 -27.79256 -26.73032 -26.52982 -25.66595 -23.22211 -22.75598 -22.31052 -21.53550 -21.21461 -20.41268 -19.85852 -18.72281 -18.00678 -17.68343 -17.03945 -16.89419 -16.73085 -16.43311 -16.35535 -16.01939 -15.82697 -15.69384 -15.44252 -15.21515 -14.89060 -14.57240 -14.31460 -14.04192 -13.87789 -13.54902 -13.52651 -13.33135 -12.99041 -12.84462 -12.66582 -12.60609 -12.41749 -12.40558 -12.21684 -12.12884 -11.92621 -11.77618 -11.52445 -11.44784 -11.38975 -11.28245 -11.15634 -10.35660 -10.29707 -10.12185 -10.01637 -9.19663 -8.47333 -5.96006 1.36193 1.41652 1.47896 1.55740 2.01320 2.05227 2.29217 2.46092 2.97716 3.19973 3.21643 3.47623 3.53717 3.63057 3.67072 3.79608 3.83619 3.95403 4.04247 4.07267 4.18319 4.28501 4.34523 4.35950 4.43990 4.49854 4.53006 4.56007 4.60859 4.71797 4.80154 4.83109 4.86515 4.89621 4.94278 5.02895 5.14409 5.15641 5.23527 5.27984 5.36765 5.40836 5.50426 5.94863 5.97925 6.21811 6.43023 6.53173 6.60323 7.12577 7.19543 7.56219 8.12034 8.70175 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020722 B = 0.001597 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.926130 B =17524.422635 C =18103.803951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.382 6.382 3 C 0.111 3.889 4 H 0.117 0.883 5 C 0.486 3.514 6 O -0.580 6.580 7 N -0.705 5.705 8 C 0.133 3.867 9 C -0.099 4.099 10 C -0.158 4.158 11 C 0.062 3.938 12 N -0.677 5.677 13 C 0.067 3.933 14 C 0.435 3.565 15 O -0.627 6.627 16 N -0.573 5.573 17 C -0.335 4.335 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.992 3.008 22 H -0.275 1.275 23 H -0.270 1.270 24 H -0.270 1.270 25 C -0.120 4.120 26 C -0.177 4.177 27 C -0.148 4.148 28 C -0.162 4.162 29 H 0.098 0.902 30 H 0.031 0.969 31 H 0.070 0.930 32 H 0.417 0.583 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.126 0.874 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.343 0.657 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.093 0.907 47 H 0.120 0.880 48 H 0.110 0.890 49 H 0.099 0.901 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.644 -9.649 -21.899 32.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.300 6.300 3 C 0.049 3.951 4 H 0.135 0.865 5 C 0.272 3.728 6 O -0.460 6.460 7 N -0.359 5.359 8 C 0.009 3.991 9 C -0.118 4.118 10 C -0.197 4.197 11 C -0.048 4.048 12 N -0.308 5.308 13 C -0.066 4.066 14 C 0.222 3.778 15 O -0.513 6.513 16 N -0.210 5.210 17 C -0.465 4.465 18 H 0.095 0.905 19 C -0.211 4.211 20 N -0.560 5.560 21 Si 0.816 3.184 22 H -0.200 1.200 23 H -0.195 1.195 24 H -0.195 1.195 25 C -0.159 4.159 26 C -0.195 4.195 27 C -0.185 4.185 28 C -0.199 4.199 29 H 0.117 0.883 30 H 0.050 0.950 31 H 0.088 0.912 32 H 0.255 0.745 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.144 0.856 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.162 0.838 40 H 0.086 0.914 41 H 0.123 0.877 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.112 0.888 47 H 0.138 0.862 48 H 0.128 0.872 49 H 0.117 0.883 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.904 -10.416 -20.228 31.582 hybrid contribution 1.283 0.206 -0.163 1.310 sum -20.620 -10.210 -20.391 30.745 Atomic orbital electron populations 1.23037 0.79377 1.04308 1.00511 1.87991 1.21485 1.26220 1.94298 1.21650 0.96125 0.86808 0.90477 0.86535 1.21873 0.76407 0.81856 0.92637 1.90706 1.52402 1.55038 1.47840 1.45875 1.66533 1.13979 1.09522 1.21284 1.00316 0.94777 0.82730 1.22540 0.96008 0.94350 0.98905 1.23767 0.96297 0.98900 1.00741 1.23243 0.91305 0.99277 0.91007 1.60041 1.12289 1.06392 1.52039 1.21575 0.91818 0.97550 0.95618 1.21024 0.84951 0.83411 0.88381 1.90494 1.79358 1.39629 1.41859 1.41939 1.21121 1.28168 1.29783 1.19699 1.02060 1.14060 1.10670 0.90532 1.26014 1.00684 0.94783 0.99659 1.69667 1.35043 1.16549 1.34723 0.84882 0.77490 0.78258 0.77759 1.20013 1.19494 1.19542 1.23044 0.97126 0.99814 0.95920 1.22019 0.95507 1.09535 0.92475 1.23259 1.04795 0.92121 0.98292 1.22953 1.04089 0.98413 0.94402 0.88339 0.95038 0.91175 0.74537 0.92061 0.93525 0.85616 0.91257 0.89518 0.86821 0.83786 0.91368 0.87673 0.76885 0.91267 0.90003 0.91165 0.88843 0.86155 0.87158 0.88273 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.87 113.37 1.23 1.54 16 2 O -0.38 -7.44 9.81 -129.99 -1.28 -8.71 16 3 C 0.11 1.59 2.71 29.85 0.08 1.67 16 4 H 0.12 0.86 7.48 -2.39 -0.02 0.85 16 5 C 0.49 9.91 7.12 87.66 0.62 10.53 16 6 O -0.58 -18.13 16.51 15.97 0.26 -17.87 16 7 N -0.71 -9.94 5.52 -463.05 -2.55 -12.49 16 8 C 0.13 2.27 5.50 86.38 0.48 2.75 16 9 C -0.10 -1.28 3.75 -10.27 -0.04 -1.32 16 10 C -0.16 -2.53 7.26 31.18 0.23 -2.31 16 11 C 0.06 1.25 4.18 45.50 0.19 1.44 16 12 N -0.68 -20.82 6.25 -492.57 -3.08 -23.90 16 13 C 0.07 2.22 6.01 85.56 0.51 2.73 16 14 C 0.43 20.78 7.82 87.66 0.69 21.47 16 15 O -0.63 -35.42 15.78 -3.06 -0.05 -35.46 16 16 N -0.57 -29.44 5.29 -306.98 -1.62 -31.06 16 17 C -0.34 -19.21 9.68 84.04 0.81 -18.40 16 18 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 19 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16 20 N -0.92 -49.32 13.05 21.66 0.28 -49.03 16 21 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 C -0.12 -2.19 7.44 31.12 0.23 -1.96 16 26 C -0.18 -2.14 5.34 -10.79 -0.06 -2.20 16 27 C -0.15 -0.83 10.18 30.62 0.31 -0.52 16 28 C -0.16 -1.45 10.17 30.62 0.31 -1.14 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.49 7.98 -2.39 -0.02 0.47 16 32 H 0.42 2.97 8.47 -92.71 -0.79 2.18 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.05 1.04 7.87 -2.38 -0.02 1.02 16 35 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 1.38 7.61 -2.39 -0.02 1.37 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 1.93 7.87 -2.39 -0.02 1.92 16 39 H 0.34 11.46 7.91 -89.69 -0.71 10.75 16 40 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.11 3.11 8.13 -2.39 -0.02 3.09 16 42 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 43 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.07 1.59 8.10 -2.39 -0.02 1.57 16 46 H 0.09 1.52 8.11 -2.39 -0.02 1.50 16 47 H 0.12 0.16 8.05 -2.39 -0.02 0.14 16 48 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -79.32 418.97 -1.20 -80.52 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -1.26 Total: 38.74 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 6.07 Total: 14.12 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -6.97 Total: -116.48 kcal Atomic # 8 Polarization: -60.98 SS G_CDS: -1.06 Total: -62.04 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -79.32 -1.20 -80.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100295323.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.766 kcal (2) G-P(sol) polarization free energy of solvation -79.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds