Wall clock time and date at job start Sat Apr 11 2020 05:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 113.99798 * 2 1 4 4 C 1.50701 * 109.47420 * 180.02562 * 3 2 1 5 5 O 1.21281 * 119.99548 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00109 * 180.02562 * 4 3 2 7 7 C 1.46496 * 119.99814 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47161 * 179.97438 * 7 6 4 9 9 C 1.54104 * 112.36297 * 299.64546 * 8 7 6 10 10 C 1.54885 * 104.15735 * 261.89223 * 9 8 7 11 11 C 1.56537 * 102.80304 * 321.36832 * 10 9 8 12 12 C 1.54265 * 103.61420 * 37.96258 * 11 10 9 13 13 H 1.09002 * 111.35739 * 98.89926 * 12 11 10 14 14 N 1.47923 * 108.70723 * 221.93491 * 12 11 10 15 15 C 1.46905 * 110.99656 * 260.70632 * 14 12 11 16 16 C 1.50704 * 109.46701 * 190.00134 * 15 14 12 17 17 O 1.21287 * 120.00346 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99657 * 180.02562 * 16 15 14 19 19 C 1.37093 * 119.99892 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00317 * 359.97438 * 19 18 16 21 21 C 1.38953 * 120.00178 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00241 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99772 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47274 * 89.99702 * 23 21 19 25 25 H 1.48496 * 109.47352 * 210.00081 * 23 21 19 26 26 H 1.48500 * 109.47010 * 330.00151 * 23 21 19 27 27 C 1.48480 * 105.98958 * 140.09228 * 14 12 11 28 28 C 1.54448 * 111.19030 * 62.90250 * 8 7 6 29 29 H 1.08999 * 109.47519 * 300.00433 * 1 2 3 30 30 H 1.09002 * 109.47317 * 60.00784 * 1 2 3 31 31 H 1.09008 * 109.46805 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47227 * 59.99514 * 3 2 1 33 33 H 1.09008 * 109.47002 * 299.99589 * 3 2 1 34 34 H 0.96992 * 119.99998 * 359.97438 * 6 4 3 35 35 H 1.08999 * 109.47553 * 59.99417 * 7 6 4 36 36 H 1.09008 * 109.46756 * 299.99443 * 7 6 4 37 37 H 1.09004 * 110.49597 * 20.55510 * 9 8 7 38 38 H 1.08996 * 110.49803 * 143.22575 * 9 8 7 39 39 H 1.09006 * 110.75827 * 79.85856 * 10 9 8 40 40 H 1.09003 * 110.76213 * 203.04921 * 10 9 8 41 41 H 1.08999 * 110.71669 * 279.54717 * 11 10 9 42 42 H 1.08998 * 110.94771 * 156.48719 * 11 10 9 43 43 H 1.08993 * 109.47185 * 310.00056 * 15 14 12 44 44 H 1.08995 * 109.46688 * 70.00441 * 15 14 12 45 45 H 0.96997 * 119.99800 * 359.97438 * 18 16 15 46 46 H 0.97005 * 119.99964 * 179.97438 * 22 21 19 47 47 H 1.08994 * 110.67375 * 79.22518 * 27 14 12 48 48 H 1.09005 * 110.66595 * 202.35958 * 27 14 12 49 49 H 1.09003 * 110.72054 * 340.32532 * 28 8 7 50 50 H 1.09001 * 110.72063 * 217.05633 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0340 0.0917 -0.0006 6 7 4.2763 2.2970 -0.0002 7 6 5.7367 2.1814 -0.0014 8 6 6.3590 3.5791 -0.0013 9 6 5.9525 4.4020 -1.2392 10 6 7.1486 4.2418 -2.2101 11 6 8.3838 4.2903 -1.2497 12 6 7.9045 3.5194 -0.0024 13 1 8.2627 2.4899 -0.0101 14 7 8.3622 4.2400 1.2057 15 6 9.5753 3.6229 1.7587 16 6 9.8711 4.2202 3.1103 17 8 9.1429 5.0753 3.5681 18 7 10.9450 3.8040 3.8104 19 6 11.2139 4.3469 5.0402 20 1 10.5656 5.1084 5.4478 21 6 12.3207 3.9176 5.7623 22 7 12.5788 4.4383 6.9409 23 14 13.4419 2.6000 5.0576 24 1 14.5199 3.2409 4.2624 25 1 14.0435 1.8170 6.1666 26 1 12.6534 1.6949 4.1835 27 6 7.2395 4.1681 2.1747 28 6 5.9878 4.3554 1.2813 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 1.6884 1.8464 0.8899 33 1 1.6885 1.8464 -0.8901 34 1 3.8591 3.1726 0.0001 35 1 6.0578 1.6412 -0.8920 36 1 6.0590 1.6397 0.8880 37 1 5.0431 3.9981 -1.6842 38 1 5.8152 5.4499 -0.9727 39 1 7.0984 3.2852 -2.7304 40 1 7.1811 5.0661 -2.9225 41 1 8.6299 5.3198 -0.9897 42 1 9.2448 3.7935 -1.6968 43 1 9.4218 2.5487 1.8618 44 1 10.4146 3.8074 1.0883 45 1 11.5272 3.1199 3.4445 46 1 13.3513 4.1383 7.4451 47 1 7.2184 3.1963 2.6678 48 1 7.3123 4.9713 2.9081 49 1 5.1076 3.9200 1.7545 50 1 5.8259 5.4104 1.0604 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107243654.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:45 Heat of formation + Delta-G solvation = -100.339308 kcal Electronic energy + Delta-G solvation = -30277.742840 eV Core-core repulsion = 26112.315110 eV Total energy + Delta-G solvation = -4165.427730 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.79306 -39.71405 -38.33026 -37.72531 -35.34089 -34.51827 -33.80069 -32.05975 -31.62488 -29.80665 -28.42098 -28.03047 -26.29737 -25.83162 -24.69192 -23.76526 -21.43346 -20.88276 -20.33248 -19.44396 -18.98451 -18.31021 -17.66141 -17.07458 -16.72003 -16.06739 -15.79274 -15.64801 -15.53164 -14.93345 -14.84866 -14.78576 -14.49793 -14.33411 -13.89988 -13.48522 -13.44624 -13.33080 -13.14387 -12.75357 -12.60618 -12.46488 -12.12540 -12.02229 -11.90497 -11.62722 -11.29144 -11.25898 -11.16186 -11.05020 -10.85032 -10.78691 -10.63494 -10.59390 -10.35607 -10.24718 -10.05730 -9.98488 -9.55777 -9.33141 -8.48076 -8.20821 -8.03624 -6.32485 -3.83826 2.33144 2.48176 3.02636 3.06812 3.15037 3.66285 3.71461 3.97917 4.09558 4.22357 4.32783 4.38953 4.53293 4.64320 4.70444 4.80056 4.87900 4.92820 4.93491 5.08213 5.15406 5.18934 5.20540 5.24109 5.30662 5.33004 5.49558 5.56605 5.61000 5.65203 5.72905 5.78155 5.84922 5.87253 5.91080 5.95952 6.03297 6.05643 6.14314 6.26566 6.31531 6.53004 6.65613 7.14245 7.19061 7.25167 7.57087 7.93302 8.13310 8.58257 8.93682 9.40898 9.81140 10.80451 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.002424 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.437982 B =11547.114461 C =12535.077466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.043 3.957 4 C 0.511 3.489 5 O -0.519 6.519 6 N -0.724 5.724 7 C 0.141 3.859 8 C -0.083 4.083 9 C -0.110 4.110 10 C -0.123 4.123 11 C -0.109 4.109 12 C 0.069 3.931 13 H 0.060 0.940 14 N -0.486 5.486 15 C 0.032 3.968 16 C 0.451 3.549 17 O -0.563 6.563 18 N -0.589 5.589 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.880 5.880 23 Si 0.879 3.121 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.270 1.270 27 C 0.037 3.963 28 C -0.118 4.118 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.401 0.599 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.062 0.938 43 H 0.049 0.951 44 H 0.091 0.909 45 H 0.371 0.629 46 H 0.273 0.727 47 H 0.035 0.965 48 H 0.119 0.881 49 H 0.067 0.933 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.526 -3.739 -19.702 27.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.037 4.037 4 C 0.296 3.704 5 O -0.393 6.393 6 N -0.379 5.379 7 C 0.018 3.982 8 C -0.084 4.084 9 C -0.147 4.147 10 C -0.161 4.161 11 C -0.147 4.147 12 C -0.040 4.040 13 H 0.078 0.922 14 N -0.210 5.210 15 C -0.100 4.100 16 C 0.237 3.763 17 O -0.446 6.446 18 N -0.228 5.228 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.520 5.520 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.090 4.090 28 C -0.156 4.156 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.236 0.764 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.109 0.891 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.053 0.947 48 H 0.137 0.863 49 H 0.085 0.915 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.229 -3.603 -19.285 27.471 hybrid contribution 0.562 -1.344 -0.117 1.462 sum -18.667 -4.947 -19.402 27.374 Atomic orbital electron populations 1.22853 0.80264 1.03422 1.00165 1.88027 1.19870 1.25127 1.95424 1.22241 0.91661 0.87121 1.02691 1.20248 0.88671 0.84614 0.76867 1.90754 1.74606 1.26498 1.47484 1.45876 1.07198 1.08677 1.76136 1.21282 0.78399 0.96069 1.02450 1.22162 0.95356 0.93925 0.96939 1.22435 0.97936 0.99930 0.94429 1.22766 0.94690 1.01366 0.97290 1.22666 0.96783 1.01800 0.93475 1.23083 0.92188 0.96246 0.92522 0.92200 1.64763 1.03075 1.48952 1.04235 1.22145 0.94897 0.96621 0.96298 1.19613 0.83560 0.86451 0.86628 1.90470 1.48972 1.34104 1.71008 1.42203 1.24768 1.37228 1.18560 1.19417 1.10957 1.21009 0.91928 0.86251 1.25043 0.97383 0.98007 0.95729 1.69620 1.28359 1.42381 1.11670 0.86677 0.81497 0.81876 0.79387 1.19557 1.20166 1.19523 1.23498 0.87743 1.02366 0.95395 1.22778 0.98263 1.00281 0.94319 0.93696 0.93783 0.89025 0.90091 0.90228 0.76373 0.91164 0.91227 0.91866 0.90599 0.91819 0.91534 0.89746 0.91914 0.93313 0.89134 0.79679 0.91598 0.94682 0.86266 0.91465 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.77 10.24 -55.14 -0.56 -4.34 16 3 C 0.04 0.32 6.42 36.01 0.23 0.55 16 4 C 0.51 5.55 7.91 -10.98 -0.09 5.46 16 5 O -0.52 -8.31 16.50 -14.35 -0.24 -8.55 16 6 N -0.72 -6.14 4.56 -60.29 -0.28 -6.41 16 7 C 0.14 1.45 4.56 -4.04 -0.02 1.43 16 8 C -0.08 -0.81 0.53 -152.30 -0.08 -0.89 16 9 C -0.11 -0.87 5.73 -25.16 -0.14 -1.01 16 10 C -0.12 -1.01 6.95 -23.83 -0.17 -1.18 16 11 C -0.11 -1.13 6.64 -24.16 -0.16 -1.29 16 12 C 0.07 0.82 2.90 -65.61 -0.19 0.63 16 13 H 0.06 0.71 7.34 -51.93 -0.38 0.33 16 14 N -0.49 -7.48 4.73 -222.83 -1.05 -8.53 16 15 C 0.03 0.54 5.52 -4.97 -0.03 0.51 16 16 C 0.45 10.11 7.49 -10.98 -0.08 10.03 16 17 O -0.56 -14.47 13.08 5.55 0.07 -14.40 16 18 N -0.59 -13.98 5.09 -10.96 -0.06 -14.04 16 19 C -0.30 -8.56 10.16 -14.93 -0.15 -8.71 16 20 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -25.69 13.96 55.50 0.77 -24.92 16 23 Si 0.88 19.47 27.74 -169.99 -4.71 14.76 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 26 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 27 C 0.04 0.58 5.29 -1.94 -0.01 0.57 16 28 C -0.12 -1.32 5.92 -24.96 -0.15 -1.47 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 34 H 0.40 2.27 7.48 -40.82 -0.31 1.96 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 37 H 0.06 0.42 7.16 -51.93 -0.37 0.05 16 38 H 0.08 0.61 7.27 -51.93 -0.38 0.23 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 1.00 7.97 -51.93 -0.41 0.58 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.75 7.86 -51.93 -0.41 0.34 16 44 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.37 7.80 5.76 -40.82 -0.24 7.57 16 46 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.03 0.58 8.02 -51.93 -0.42 0.16 16 48 H 0.12 2.30 5.95 -51.93 -0.31 1.99 16 49 H 0.07 0.67 7.27 -51.93 -0.38 0.29 16 50 H 0.08 0.85 7.27 -51.93 -0.38 0.48 16 LS Contribution 393.75 15.07 5.93 5.93 Total: -1.00 -35.51 393.75 -8.32 -43.83 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -8.18 Total: 9.71 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -0.02 Total: 6.95 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.61 Total: -53.90 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.73 Total: -27.28 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.76 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.51 -8.32 -43.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107243654.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.508 kcal (2) G-P(sol) polarization free energy of solvation -35.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds