Wall clock time and date at job start Sat Apr 11 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 113.99798 * 2 1 4 4 C 1.50701 * 109.47420 * 180.02562 * 3 2 1 5 5 O 1.21281 * 119.99548 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00109 * 180.02562 * 4 3 2 7 7 C 1.46496 * 119.99814 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47161 * 179.97438 * 7 6 4 9 9 C 1.54104 * 112.36297 * 299.64546 * 8 7 6 10 10 C 1.54885 * 104.15735 * 261.89223 * 9 8 7 11 11 C 1.56537 * 102.80304 * 321.36832 * 10 9 8 12 12 C 1.54265 * 103.61420 * 37.96258 * 11 10 9 13 13 H 1.09002 * 111.35739 * 98.89926 * 12 11 10 14 14 N 1.47923 * 108.70723 * 221.93491 * 12 11 10 15 15 C 1.46905 * 110.99656 * 260.70632 * 14 12 11 16 16 C 1.50704 * 109.46701 * 190.00134 * 15 14 12 17 17 O 1.21287 * 120.00346 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99657 * 180.02562 * 16 15 14 19 19 C 1.37093 * 119.99892 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00317 * 359.97438 * 19 18 16 21 21 C 1.38953 * 120.00178 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00241 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99772 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47274 * 89.99702 * 23 21 19 25 25 H 1.48496 * 109.47352 * 210.00081 * 23 21 19 26 26 H 1.48500 * 109.47010 * 330.00151 * 23 21 19 27 27 C 1.48480 * 105.98958 * 140.09228 * 14 12 11 28 28 C 1.54448 * 111.19030 * 62.90250 * 8 7 6 29 29 H 1.08999 * 109.47519 * 300.00433 * 1 2 3 30 30 H 1.09002 * 109.47317 * 60.00784 * 1 2 3 31 31 H 1.09008 * 109.46805 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47227 * 59.99514 * 3 2 1 33 33 H 1.09008 * 109.47002 * 299.99589 * 3 2 1 34 34 H 0.96992 * 119.99998 * 359.97438 * 6 4 3 35 35 H 1.08999 * 109.47553 * 59.99417 * 7 6 4 36 36 H 1.09008 * 109.46756 * 299.99443 * 7 6 4 37 37 H 1.09004 * 110.49597 * 20.55510 * 9 8 7 38 38 H 1.08996 * 110.49803 * 143.22575 * 9 8 7 39 39 H 1.09006 * 110.75827 * 79.85856 * 10 9 8 40 40 H 1.09003 * 110.76213 * 203.04921 * 10 9 8 41 41 H 1.08999 * 110.71669 * 279.54717 * 11 10 9 42 42 H 1.08998 * 110.94771 * 156.48719 * 11 10 9 43 43 H 1.08993 * 109.47185 * 310.00056 * 15 14 12 44 44 H 1.08995 * 109.46688 * 70.00441 * 15 14 12 45 45 H 0.96997 * 119.99800 * 359.97438 * 18 16 15 46 46 H 0.97005 * 119.99964 * 179.97438 * 22 21 19 47 47 H 1.08994 * 110.67375 * 79.22518 * 27 14 12 48 48 H 1.09005 * 110.66595 * 202.35958 * 27 14 12 49 49 H 1.09003 * 110.72054 * 340.32532 * 28 8 7 50 50 H 1.09001 * 110.72063 * 217.05633 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0340 0.0917 -0.0006 6 7 4.2763 2.2970 -0.0002 7 6 5.7367 2.1814 -0.0014 8 6 6.3590 3.5791 -0.0013 9 6 5.9525 4.4020 -1.2392 10 6 7.1486 4.2418 -2.2101 11 6 8.3838 4.2903 -1.2497 12 6 7.9045 3.5194 -0.0024 13 1 8.2627 2.4899 -0.0101 14 7 8.3622 4.2400 1.2057 15 6 9.5753 3.6229 1.7587 16 6 9.8711 4.2202 3.1103 17 8 9.1429 5.0753 3.5681 18 7 10.9450 3.8040 3.8104 19 6 11.2139 4.3469 5.0402 20 1 10.5656 5.1084 5.4478 21 6 12.3207 3.9176 5.7623 22 7 12.5788 4.4383 6.9409 23 14 13.4419 2.6000 5.0576 24 1 14.5199 3.2409 4.2624 25 1 14.0435 1.8170 6.1666 26 1 12.6534 1.6949 4.1835 27 6 7.2395 4.1681 2.1747 28 6 5.9878 4.3554 1.2813 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 1.6884 1.8464 0.8899 33 1 1.6885 1.8464 -0.8901 34 1 3.8591 3.1726 0.0001 35 1 6.0578 1.6412 -0.8920 36 1 6.0590 1.6397 0.8880 37 1 5.0431 3.9981 -1.6842 38 1 5.8152 5.4499 -0.9727 39 1 7.0984 3.2852 -2.7304 40 1 7.1811 5.0661 -2.9225 41 1 8.6299 5.3198 -0.9897 42 1 9.2448 3.7935 -1.6968 43 1 9.4218 2.5487 1.8618 44 1 10.4146 3.8074 1.0883 45 1 11.5272 3.1199 3.4445 46 1 13.3513 4.1383 7.4451 47 1 7.2184 3.1963 2.6678 48 1 7.3123 4.9713 2.9081 49 1 5.1076 3.9200 1.7545 50 1 5.8259 5.4104 1.0604 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107243654.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:44 Heat of formation + Delta-G solvation = -128.696235 kcal Electronic energy + Delta-G solvation = -30278.972488 eV Core-core repulsion = 26112.315110 eV Total energy + Delta-G solvation = -4166.657379 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.75853 -40.68659 -39.95164 -38.39598 -36.57115 -35.86647 -35.20870 -33.81526 -32.95059 -30.59285 -29.54269 -28.79770 -27.30253 -26.86297 -25.60263 -25.27138 -22.44853 -21.80016 -21.36056 -21.11718 -20.24969 -19.82290 -18.50766 -17.74734 -17.60978 -17.32709 -16.97363 -16.70364 -16.51656 -16.36356 -16.07427 -15.73728 -15.51466 -15.32073 -15.08028 -14.97499 -14.63048 -14.41708 -14.18932 -14.07256 -13.94309 -13.51953 -13.37670 -13.09342 -12.91199 -12.62912 -12.44104 -12.35241 -12.30070 -12.21455 -12.00091 -11.85815 -11.76008 -11.61191 -11.53572 -11.47824 -11.26133 -10.92848 -10.76074 -10.28309 -10.22298 -10.12523 -9.35805 -8.43659 -6.04011 1.27913 1.32555 1.41326 1.53947 1.81233 1.91195 2.20122 2.65433 3.09155 3.11829 3.15960 3.46486 3.52233 3.64530 3.79395 4.07970 4.09695 4.20902 4.23078 4.26710 4.29749 4.30962 4.35840 4.41938 4.47237 4.50042 4.51481 4.58542 4.65080 4.73149 4.86273 4.88132 4.89571 5.04618 5.08272 5.10982 5.20592 5.27774 5.31843 5.34418 5.41964 5.50818 5.57334 5.88863 5.93755 6.04430 6.15079 6.51851 6.56815 6.85965 7.19399 7.36387 7.92999 8.73713 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.002424 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.437982 B =11547.114461 C =12535.077466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.044 3.956 4 C 0.506 3.494 5 O -0.579 6.579 6 N -0.708 5.708 7 C 0.147 3.853 8 C -0.070 4.070 9 C -0.104 4.104 10 C -0.117 4.117 11 C -0.108 4.108 12 C 0.064 3.936 13 H 0.063 0.937 14 N -0.499 5.499 15 C 0.043 3.957 16 C 0.450 3.550 17 O -0.602 6.602 18 N -0.592 5.592 19 C -0.326 4.326 20 H 0.058 0.942 21 C -0.015 4.015 22 N -0.932 5.932 23 Si 0.963 3.037 24 H -0.255 1.255 25 H -0.275 1.275 26 H -0.236 1.236 27 C 0.035 3.965 28 C -0.106 4.106 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.419 0.581 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.118 0.882 45 H 0.388 0.612 46 H 0.279 0.721 47 H 0.018 0.982 48 H 0.076 0.924 49 H 0.081 0.919 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.428 -4.841 -23.366 31.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.035 4.035 4 C 0.293 3.707 5 O -0.458 6.458 6 N -0.362 5.362 7 C 0.023 3.977 8 C -0.071 4.071 9 C -0.141 4.141 10 C -0.154 4.154 11 C -0.146 4.146 12 C -0.045 4.045 13 H 0.081 0.919 14 N -0.223 5.223 15 C -0.089 4.089 16 C 0.238 3.762 17 O -0.486 6.486 18 N -0.233 5.233 19 C -0.455 4.455 20 H 0.076 0.924 21 C -0.213 4.213 22 N -0.573 5.573 23 Si 0.783 3.217 24 H -0.180 1.180 25 H -0.200 1.200 26 H -0.160 1.160 27 C -0.093 4.093 28 C -0.144 4.144 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.257 0.743 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.136 0.864 45 H 0.223 0.777 46 H 0.089 0.911 47 H 0.036 0.964 48 H 0.094 0.906 49 H 0.099 0.901 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.170 -4.657 -22.981 30.930 hybrid contribution 0.737 -0.878 1.082 1.576 sum -19.433 -5.535 -21.899 29.797 Atomic orbital electron populations 1.23029 0.78264 1.04089 1.01716 1.87967 1.22172 1.26944 1.95816 1.22404 0.88805 0.86758 1.05527 1.20981 0.90330 0.83939 0.75410 1.90726 1.75894 1.28767 1.50459 1.45721 1.06415 1.09205 1.74899 1.21099 0.79477 0.95834 1.01257 1.22054 0.94022 0.93759 0.97249 1.22431 0.98821 0.99758 0.93111 1.22751 0.93256 1.02423 0.97005 1.22647 0.98267 1.00544 0.93141 1.23255 0.93608 0.96310 0.91293 0.91887 1.64785 1.02490 1.50002 1.05032 1.22092 0.96709 0.97170 0.92923 1.20776 0.82044 0.85225 0.88132 1.90481 1.49966 1.35712 1.72427 1.42049 1.25854 1.37982 1.17425 1.18989 1.11130 1.21095 0.94265 0.92421 1.26083 0.98802 1.00735 0.95727 1.69796 1.29461 1.44450 1.13598 0.85395 0.78923 0.78274 0.79138 1.17960 1.19960 1.15961 1.23307 0.90588 0.99682 0.95718 1.22708 0.96428 1.01210 0.94063 0.92378 0.91890 0.88995 0.87511 0.86713 0.74343 0.91161 0.93804 0.89705 0.90241 0.90968 0.90207 0.91319 0.91042 0.91281 0.86416 0.77666 0.91134 0.96370 0.90612 0.90082 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.48 16 2 O -0.41 -7.84 10.24 -129.94 -1.33 -9.17 16 3 C 0.04 0.54 6.42 71.24 0.46 1.00 16 4 C 0.51 10.20 7.91 87.66 0.69 10.89 16 5 O -0.58 -18.56 16.50 16.00 0.26 -18.29 16 6 N -0.71 -10.29 4.56 -463.06 -2.11 -12.40 16 7 C 0.15 2.77 4.56 86.38 0.39 3.16 16 8 C -0.07 -1.21 0.53 -50.75 -0.03 -1.24 16 9 C -0.10 -1.26 5.73 31.61 0.18 -1.08 16 10 C -0.12 -1.48 6.95 32.47 0.23 -1.26 16 11 C -0.11 -1.94 6.64 32.26 0.21 -1.73 16 12 C 0.06 1.39 2.90 45.72 0.13 1.52 16 13 H 0.06 1.36 7.34 -2.39 -0.02 1.34 16 14 N -0.50 -15.08 4.73 -858.91 -4.06 -19.14 16 15 C 0.04 1.39 5.52 85.56 0.47 1.86 16 16 C 0.45 20.68 7.49 87.66 0.66 21.33 16 17 O -0.60 -32.83 13.08 -3.05 -0.04 -32.87 16 18 N -0.59 -28.50 5.09 -306.98 -1.56 -30.06 16 19 C -0.33 -19.25 10.16 84.04 0.85 -18.39 16 20 H 0.06 4.03 7.39 -2.91 -0.02 4.01 16 21 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 22 N -0.93 -56.64 13.96 21.66 0.30 -56.33 16 23 Si 0.96 39.64 27.74 68.60 1.90 41.54 16 24 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.24 -8.36 6.52 99.48 0.65 -7.71 16 27 C 0.03 1.12 5.29 86.65 0.46 1.58 16 28 C -0.11 -2.24 5.92 31.74 0.19 -2.05 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.42 3.21 7.48 -92.71 -0.69 2.52 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 36 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.08 0.71 7.16 -2.38 -0.02 0.70 16 38 H 0.08 0.98 7.27 -2.39 -0.02 0.96 16 39 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 1.48 7.97 -2.39 -0.02 1.46 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.07 2.00 7.86 -2.39 -0.02 1.98 16 44 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 45 H 0.39 15.72 5.76 -92.71 -0.53 15.18 16 46 H 0.28 15.50 8.31 -92.70 -0.77 14.73 16 47 H 0.02 0.63 8.02 -2.39 -0.02 0.61 16 48 H 0.08 3.13 5.95 -2.38 -0.01 3.11 16 49 H 0.08 1.48 7.27 -2.39 -0.02 1.46 16 50 H 0.09 1.73 7.27 -2.39 -0.02 1.71 16 Total: -1.00 -86.10 393.75 -0.35 -86.45 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -0.33 Total: 33.55 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 6.62 Total: 16.72 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -7.43 Total: -117.93 kcal Atomic # 8 Polarization: -59.23 SS G_CDS: -1.11 Total: -60.34 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 1.90 Total: 41.54 kcal Total: -86.10 -0.35 -86.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107243654.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.247 kcal (2) G-P(sol) polarization free energy of solvation -86.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds