Wall clock time and date at job start Sat Apr 11 2020 05:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 114.00038 * 2 1 4 4 C 1.50697 * 109.47164 * 179.97438 * 3 2 1 5 5 O 1.21286 * 120.00339 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99828 * 180.02562 * 4 3 2 7 7 C 1.48121 * 127.84491 * 0.02562 * 6 4 3 8 8 C 1.54327 * 104.69362 * 140.22116 * 7 6 4 9 9 H 1.08998 * 112.59577 * 262.03042 * 8 7 6 10 10 C 1.54158 * 109.65524 * 137.80048 * 8 7 6 11 11 C 1.54839 * 104.33075 * 223.42066 * 10 8 7 12 12 C 1.54847 * 102.73496 * 38.18812 * 11 10 8 13 13 C 1.54165 * 104.32524 * 321.81568 * 12 11 10 14 14 C 1.52998 * 111.82341 * 261.24439 * 13 12 11 15 15 N 1.46907 * 109.47017 * 298.98756 * 14 13 12 16 16 C 1.46895 * 110.99962 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47048 * 179.97438 * 16 15 14 18 18 O 1.21292 * 119.99931 * 0.02562 * 17 16 15 19 19 N 1.34784 * 119.99961 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99504 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00446 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99362 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99820 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00230 * 359.71778 * 22 20 19 25 25 H 1.48501 * 109.46922 * 90.00204 * 24 22 20 26 26 H 1.48496 * 109.47354 * 210.00401 * 24 22 20 27 27 H 1.48501 * 109.47428 * 330.00509 * 24 22 20 28 28 C 1.50621 * 127.74251 * 180.30540 * 6 4 3 29 29 H 1.09000 * 109.47100 * 300.00120 * 1 2 3 30 30 H 1.09002 * 109.46784 * 59.99901 * 1 2 3 31 31 H 1.08996 * 109.46866 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46480 * 59.99876 * 3 2 1 33 33 H 1.08995 * 109.46853 * 300.00237 * 3 2 1 34 34 H 1.09005 * 110.39091 * 21.42041 * 7 6 4 35 35 H 1.08995 * 110.39403 * 259.02915 * 7 6 4 36 36 H 1.09004 * 110.46256 * 104.70987 * 10 8 7 37 37 H 1.09004 * 110.57392 * 342.19091 * 10 8 7 38 38 H 1.09004 * 110.76075 * 279.87941 * 11 10 8 39 39 H 1.08998 * 110.92195 * 156.57162 * 11 10 8 40 40 H 1.08997 * 110.46861 * 203.10370 * 12 11 10 41 41 H 1.09004 * 110.46080 * 80.52114 * 12 11 10 42 42 H 1.08995 * 109.47462 * 178.98178 * 14 13 12 43 43 H 1.08998 * 109.47236 * 58.97923 * 14 13 12 44 44 H 1.00901 * 110.99535 * 303.94912 * 15 14 13 45 45 H 1.09004 * 109.47549 * 59.99674 * 16 15 14 46 46 H 1.09005 * 109.47114 * 299.99750 * 16 15 14 47 47 H 0.96999 * 120.00044 * 359.97438 * 19 17 16 48 48 H 0.97000 * 120.00377 * 179.97438 * 23 22 20 49 49 H 1.09003 * 110.77791 * 101.42588 * 28 6 4 50 50 H 1.09000 * 111.15576 * 338.24372 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0342 0.0916 0.0015 6 7 4.2764 2.2969 0.0013 7 6 3.8279 3.7086 0.0020 8 6 4.8026 4.4286 0.9575 9 1 4.3926 4.5509 1.9600 10 6 5.2100 5.7879 0.3552 11 6 6.7367 5.8731 0.5991 12 6 7.2031 4.4168 0.3555 13 6 6.0790 3.5504 0.9577 14 6 6.4321 3.0563 2.3620 15 7 7.6428 2.2265 2.2991 16 6 8.0131 1.7337 3.6324 17 6 9.2561 0.8881 3.5281 18 8 9.7820 0.7136 2.4491 19 7 9.7839 0.3266 4.6338 20 6 10.9151 -0.4423 4.5389 21 1 11.3829 -0.5984 3.5780 22 6 11.4590 -1.0216 5.6788 23 7 12.5435 -1.7582 5.5879 24 14 10.6535 -0.7464 7.3415 25 1 9.6447 -1.8086 7.5847 26 1 11.6876 -0.7926 8.4063 27 1 9.9877 0.5810 7.3555 28 6 5.7802 2.3814 -0.0044 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 2.8063 3.7823 0.3751 35 1 3.8982 4.1299 -1.0008 36 1 4.6963 6.6012 0.8679 37 1 4.9926 5.8143 -0.7126 38 1 6.9477 6.1801 1.6235 39 1 7.2069 6.5532 -0.1110 40 1 8.1461 4.2277 0.8684 41 1 7.3033 4.2223 -0.7123 42 1 5.6063 2.4648 2.7574 43 1 6.6112 3.9114 3.0137 44 1 7.5241 1.4624 1.6509 45 1 7.1984 1.1331 4.0371 46 1 8.2033 2.5800 4.2927 47 1 9.3640 0.4671 5.4968 48 1 12.9234 -2.1623 6.3837 49 1 6.1511 2.6079 -1.0041 50 1 6.2274 1.4596 0.3676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112220398.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:51 Heat of formation + Delta-G solvation = -99.719177 kcal Electronic energy + Delta-G solvation = -30203.914305 eV Core-core repulsion = 26038.513466 eV Total energy + Delta-G solvation = -4165.400839 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.90399 -39.24146 -38.35844 -37.55400 -35.43714 -34.86118 -33.83920 -31.65075 -31.15509 -30.21035 -29.07083 -27.33131 -26.36983 -25.73515 -25.04888 -23.71522 -22.58160 -20.79708 -19.63265 -19.40384 -18.90863 -18.30445 -17.59268 -16.77461 -16.65333 -16.29548 -15.95511 -15.82139 -15.43015 -15.25990 -14.81172 -14.62825 -14.43699 -14.01963 -13.86289 -13.61193 -13.47008 -13.38525 -13.08603 -12.77484 -12.55105 -12.49442 -12.26529 -12.06906 -11.87060 -11.86816 -11.64621 -11.36397 -11.15345 -11.13948 -10.96696 -10.91710 -10.73895 -10.65807 -10.55953 -10.21206 -9.93425 -9.90603 -9.52943 -9.00342 -8.54589 -8.15657 -8.09891 -6.26902 -3.78041 2.32667 2.38745 3.05767 3.10159 3.17862 3.54423 3.78901 3.87748 4.08237 4.13529 4.16180 4.37665 4.46546 4.62020 4.71474 4.78396 4.84505 4.88017 4.90034 4.95245 4.98594 4.99644 5.08511 5.17252 5.24516 5.27068 5.27831 5.39608 5.50538 5.53005 5.59094 5.62598 5.68351 5.70737 5.81681 5.84248 5.87749 5.92074 5.97378 6.07843 6.17977 6.36389 6.58833 7.10236 7.26426 7.57915 7.62632 7.94257 8.19040 8.64226 8.99406 9.46887 9.87390 10.86333 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010713 B = 0.002696 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.039706 B =10384.983809 C =12136.809347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.049 3.951 4 C 0.530 3.470 5 O -0.513 6.513 6 N -0.630 5.630 7 C 0.106 3.894 8 C -0.098 4.098 9 H 0.089 0.911 10 C -0.116 4.116 11 C -0.123 4.123 12 C -0.110 4.110 13 C -0.067 4.067 14 C 0.079 3.921 15 N -0.666 5.666 16 C 0.048 3.952 17 C 0.451 3.549 18 O -0.563 6.563 19 N -0.591 5.591 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.117 3.883 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.027 0.973 43 H 0.076 0.924 44 H 0.350 0.650 45 H 0.044 0.956 46 H 0.087 0.913 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.081 0.919 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.866 17.724 -9.240 32.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.031 4.031 4 C 0.318 3.682 5 O -0.387 6.387 6 N -0.367 5.367 7 C -0.017 4.017 8 C -0.117 4.117 9 H 0.108 0.892 10 C -0.154 4.154 11 C -0.161 4.161 12 C -0.148 4.148 13 C -0.068 4.068 14 C -0.051 4.051 15 N -0.300 5.300 16 C -0.085 4.085 17 C 0.237 3.763 18 O -0.445 6.445 19 N -0.231 5.231 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.004 4.004 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.094 0.906 44 H 0.171 0.829 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.203 0.797 48 H 0.083 0.917 49 H 0.099 0.901 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -24.595 17.080 -9.850 31.522 hybrid contribution -1.514 -0.254 1.680 2.275 sum -26.109 16.826 -8.170 32.117 Atomic orbital electron populations 1.22847 0.80284 1.03468 1.00041 1.88043 1.19835 1.25102 1.95383 1.22191 0.91557 0.86989 1.02337 1.19863 0.88165 0.83277 0.76919 1.90793 1.74307 1.25618 1.48013 1.49597 1.07833 1.05294 1.73974 1.22572 0.98421 0.80877 0.99790 1.22732 0.94853 0.94812 0.99353 0.89248 1.22440 0.96787 0.95560 1.00621 1.22503 0.94644 0.97192 1.01753 1.22446 0.98849 0.92946 1.00553 1.22059 0.94897 0.94731 0.95159 1.21836 0.90926 0.97390 0.94940 1.60124 1.34103 1.27011 1.08739 1.21694 0.96514 0.98570 0.91684 1.19698 0.87125 0.84423 0.85080 1.90565 1.63145 1.63415 1.27363 1.42204 1.26674 1.46663 1.07564 1.19437 1.01445 1.24304 0.98037 0.86270 1.25038 0.96254 0.96813 0.98111 1.69623 1.20207 1.32409 1.29990 0.86670 0.79758 0.78645 0.84305 1.19675 1.20200 1.19496 1.23081 0.78253 0.99583 0.99494 0.93802 0.93819 0.88951 0.90408 0.90390 0.90612 0.90483 0.91548 0.91274 0.91394 0.91497 0.88944 0.91537 0.95519 0.90597 0.82898 0.93851 0.89478 0.79733 0.91656 0.90100 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.37 -4.19 10.24 -55.14 -0.56 -4.75 16 3 C 0.05 0.44 5.40 36.00 0.19 0.63 16 4 C 0.53 6.76 8.00 -10.99 -0.09 6.67 16 5 O -0.51 -9.33 16.83 -14.36 -0.24 -9.57 16 6 N -0.63 -6.41 3.36 -167.31 -0.56 -6.97 16 7 C 0.11 0.66 6.48 -2.46 -0.02 0.64 16 8 C -0.10 -0.65 3.52 -88.30 -0.31 -0.96 16 9 H 0.09 0.57 7.88 -51.93 -0.41 0.16 16 10 C -0.12 -0.64 6.38 -25.16 -0.16 -0.80 16 11 C -0.12 -0.89 6.90 -24.79 -0.17 -1.06 16 12 C -0.11 -1.04 5.87 -25.15 -0.15 -1.18 16 13 C -0.07 -0.64 0.71 -152.19 -0.11 -0.74 16 14 C 0.08 0.91 4.71 -3.82 -0.02 0.89 16 15 N -0.67 -10.36 5.41 -115.06 -0.62 -10.98 16 16 C 0.05 0.82 6.17 -4.98 -0.03 0.79 16 17 C 0.45 10.54 7.82 -10.98 -0.09 10.46 16 18 O -0.56 -15.48 15.78 5.55 0.09 -15.39 16 19 N -0.59 -14.51 5.09 -10.96 -0.06 -14.57 16 20 C -0.30 -8.80 10.16 -14.93 -0.15 -8.95 16 21 H 0.12 3.94 7.39 -52.49 -0.39 3.55 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -26.29 13.96 55.50 0.77 -25.52 16 24 Si 0.88 19.83 27.73 -169.99 -4.71 15.12 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -5.53 6.53 56.52 0.37 -5.16 16 28 C 0.12 1.31 6.21 -1.04 -0.01 1.30 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.50 7.95 -51.93 -0.41 0.08 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.31 7.30 -51.93 -0.38 -0.07 16 35 H 0.08 0.39 7.26 -51.93 -0.38 0.01 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.34 7.26 -51.93 -0.38 -0.04 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.09 1.12 7.37 -51.93 -0.38 0.73 16 41 H 0.07 0.60 7.19 -51.93 -0.37 0.22 16 42 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.35 5.99 6.51 -39.29 -0.26 5.74 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.37 7.98 5.77 -40.82 -0.24 7.75 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 49 H 0.08 0.83 7.20 -51.93 -0.37 0.46 16 50 H 0.09 1.24 6.00 -51.93 -0.31 0.93 16 LS Contribution 396.91 15.07 5.98 5.98 Total: -1.00 -37.26 396.91 -8.09 -45.36 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -8.09 Total: 11.28 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -0.08 Total: 10.03 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.47 Total: -58.04 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.72 Total: -29.72 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.71 Total: 15.12 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.26 -8.09 -45.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112220398.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.361 kcal (2) G-P(sol) polarization free energy of solvation -37.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds