Wall clock time and date at job start Sat Apr 11 2020 05:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42894 * 114.00261 * 2 1 4 4 H 1.09005 * 110.43478 * 27.46246 * 3 2 1 5 5 C 1.54885 * 110.60176 * 264.84240 * 3 2 1 6 6 C 1.54888 * 102.75015 * 203.32273 * 5 3 2 7 7 C 1.54274 * 104.19448 * 37.94530 * 6 5 3 8 8 H 1.08999 * 110.07372 * 95.69691 * 7 6 5 9 9 C 1.50697 * 110.03166 * 217.10525 * 7 6 5 10 10 O 1.21277 * 119.99982 * 95.14584 * 9 7 6 11 11 N 1.34775 * 119.99984 * 275.14364 * 9 7 6 12 12 C 1.47087 * 120.88047 * 355.08005 * 11 9 7 13 13 C 1.53236 * 108.51783 * 231.20318 * 12 11 9 14 14 N 1.46899 * 109.34378 * 306.17031 * 13 12 11 15 15 C 1.46900 * 111.00056 * 187.25475 * 14 13 12 16 16 C 1.50700 * 109.46981 * 169.99905 * 15 14 13 17 17 O 1.21297 * 120.00307 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00298 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00492 * 180.02562 * 18 16 15 20 20 H 1.07998 * 119.99745 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00186 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99890 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00139 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47130 * 179.97438 * 23 21 19 25 25 H 1.48501 * 109.47025 * 59.99504 * 23 21 19 26 26 H 1.48504 * 109.46729 * 300.00011 * 23 21 19 27 27 C 1.46897 * 111.26836 * 63.10196 * 14 13 12 28 28 C 1.47076 * 120.88423 * 175.09584 * 11 9 7 29 29 C 1.53874 * 106.59761 * 336.38752 * 7 6 5 30 30 H 1.09001 * 109.46780 * 59.99007 * 1 2 3 31 31 H 1.08991 * 109.47332 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46381 * 300.00195 * 1 2 3 33 33 H 1.08996 * 110.75926 * 321.64270 * 5 3 2 34 34 H 1.09004 * 110.75932 * 84.82834 * 5 3 2 35 35 H 1.08993 * 110.49104 * 279.26915 * 6 5 3 36 36 H 1.09006 * 110.48964 * 156.62018 * 6 5 3 37 37 H 1.09001 * 109.62977 * 111.49590 * 12 11 9 38 38 H 1.08999 * 109.62730 * 350.90980 * 12 11 9 39 39 H 1.09004 * 109.49408 * 186.21011 * 13 12 11 40 40 H 1.09004 * 109.49399 * 66.12764 * 13 12 11 41 41 H 1.08994 * 109.47272 * 50.00179 * 15 14 13 42 42 H 1.09001 * 109.47120 * 289.99458 * 15 14 13 43 43 H 0.97006 * 119.99457 * 359.97438 * 18 16 15 44 44 H 0.97004 * 119.99988 * 0.02562 * 22 21 19 45 45 H 1.08999 * 109.49386 * 56.86380 * 27 14 13 46 46 H 1.09006 * 109.49133 * 176.93803 * 27 14 13 47 47 H 1.09001 * 109.63501 * 248.50548 * 28 11 9 48 48 H 1.08999 * 109.62758 * 9.08749 * 28 11 9 49 49 H 1.08997 * 110.03450 * 119.28249 * 29 7 6 50 50 H 1.08993 * 110.03595 * 240.71890 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3372 2.0217 0.4711 5 6 2.3511 1.7502 -1.4439 6 6 3.4586 2.8102 -1.2227 7 6 4.2941 2.2462 -0.0549 8 1 5.1570 1.7031 -0.4403 9 6 4.7494 3.3677 0.8429 10 8 4.1068 3.6521 1.8313 11 7 5.8707 4.0545 0.5474 12 6 6.7225 3.6583 -0.5844 13 6 8.1670 3.5373 -0.0873 14 7 8.5591 4.7872 0.5775 15 6 9.9885 4.7774 0.9162 16 6 10.4073 6.1529 1.3672 17 8 9.5951 7.0532 1.4025 18 7 11.6847 6.3833 1.7303 19 6 12.0656 7.6346 2.1411 20 1 11.3422 8.4359 2.1733 21 6 13.3826 7.8722 2.5150 22 7 14.2629 6.8973 2.4753 23 14 13.9018 9.5773 3.0740 24 1 15.3469 9.5674 3.4158 25 1 13.1132 9.9674 4.2703 26 1 13.6578 10.5522 1.9807 27 6 7.7374 5.0374 1.7691 28 6 6.2753 5.2199 1.3482 29 6 3.3733 1.2895 0.7226 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 2.7303 0.9113 -2.0273 34 1 1.4802 2.1927 -1.9276 35 1 3.0194 3.7695 -0.9491 36 1 4.0733 2.9122 -2.1171 37 1 6.6668 4.4149 -1.3671 38 1 6.3882 2.6974 -0.9754 39 1 8.8286 3.3525 -0.9336 40 1 8.2404 2.7109 0.6196 41 1 10.5679 4.4907 0.0386 42 1 10.1668 4.0619 1.7190 43 1 12.3343 5.6635 1.7017 44 1 13.9934 6.0119 2.1846 45 1 7.8168 4.1902 2.4502 46 1 8.0874 5.9406 2.2692 47 1 6.1766 6.1266 0.7513 48 1 5.6453 5.2915 2.2348 49 1 3.7888 0.2818 0.7137 50 1 3.2557 1.6363 1.7491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113046910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:04 Heat of formation + Delta-G solvation = -104.402356 kcal Electronic energy + Delta-G solvation = -29942.982704 eV Core-core repulsion = 25777.378787 eV Total energy + Delta-G solvation = -4165.603917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.75455 -39.23884 -38.53863 -37.41480 -36.02612 -34.73074 -34.01462 -31.41603 -31.09662 -29.57466 -29.16967 -28.39616 -26.46026 -25.58041 -23.86223 -23.81756 -22.24991 -21.21406 -20.49827 -19.66200 -18.75691 -18.00484 -17.84562 -16.91810 -16.55180 -16.31263 -15.87383 -15.36698 -15.26772 -15.15127 -15.01507 -14.43307 -14.23197 -14.16248 -13.97959 -13.94588 -13.70014 -13.67573 -13.03954 -12.85596 -12.61717 -12.21847 -12.04508 -11.91378 -11.74504 -11.67654 -11.62149 -11.47213 -11.25776 -11.15693 -11.12336 -11.02637 -10.87787 -10.80844 -10.21917 -9.89413 -9.88226 -9.80151 -9.52912 -8.92787 -8.45568 -8.08154 -7.99469 -6.77507 -3.90888 2.45740 2.81733 3.29455 3.33927 3.39227 3.54005 3.78653 3.83252 4.06344 4.18130 4.26809 4.28101 4.68162 4.77490 4.80260 4.85668 4.87834 4.94564 5.00857 5.01214 5.06624 5.11683 5.18836 5.21440 5.22923 5.24978 5.34162 5.37379 5.47581 5.52059 5.55965 5.60706 5.69800 5.70586 5.73436 5.77636 5.81688 5.92611 5.97421 6.08025 6.14822 6.46514 6.86049 7.02398 7.20450 7.32436 7.78244 8.03610 8.05794 8.57412 8.77413 9.44864 9.84938 10.65783 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.039716 B = 0.001835 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.841005 B =15251.345382 C =15449.173207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.084 3.916 4 H 0.070 0.930 5 C -0.143 4.143 6 C -0.107 4.107 7 C -0.113 4.113 8 H 0.099 0.901 9 C 0.519 3.481 10 O -0.543 6.543 11 N -0.610 5.610 12 C 0.112 3.888 13 C 0.038 3.962 14 N -0.514 5.514 15 C 0.047 3.953 16 C 0.445 3.555 17 O -0.571 6.571 18 N -0.575 5.575 19 C -0.382 4.382 20 H 0.099 0.901 21 C -0.009 4.009 22 N -0.900 5.900 23 Si 1.091 2.909 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.040 3.960 28 C 0.119 3.881 29 C -0.112 4.112 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.035 0.965 41 H 0.089 0.911 42 H 0.047 0.953 43 H 0.375 0.625 44 H 0.261 0.739 45 H 0.027 0.973 46 H 0.115 0.885 47 H 0.079 0.921 48 H 0.092 0.908 49 H 0.080 0.920 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.091 -14.638 -8.939 27.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.026 3.974 4 H 0.088 0.912 5 C -0.180 4.180 6 C -0.145 4.145 7 C -0.134 4.134 8 H 0.117 0.883 9 C 0.308 3.692 10 O -0.421 6.421 11 N -0.343 5.343 12 C -0.012 4.012 13 C -0.091 4.091 14 N -0.239 5.239 15 C -0.085 4.085 16 C 0.231 3.769 17 O -0.455 6.455 18 N -0.213 5.213 19 C -0.511 4.511 20 H 0.117 0.883 21 C -0.211 4.211 22 N -0.539 5.539 23 Si 0.917 3.083 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.088 4.088 28 C -0.003 4.003 29 C -0.150 4.150 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.054 0.946 41 H 0.108 0.892 42 H 0.065 0.935 43 H 0.208 0.792 44 H 0.072 0.928 45 H 0.045 0.955 46 H 0.133 0.867 47 H 0.097 0.903 48 H 0.111 0.889 49 H 0.099 0.901 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.635 -12.727 -8.155 25.579 hybrid contribution -0.780 -1.869 -0.159 2.031 sum -21.415 -14.596 -8.314 27.217 Atomic orbital electron populations 1.22784 0.81152 1.02666 1.00002 1.87902 1.19614 1.27723 1.94931 1.23035 0.94874 0.84350 0.95132 0.91159 1.22966 0.98680 0.98969 0.97430 1.22195 0.96720 0.98835 0.96752 1.21912 0.99907 0.95362 0.96215 0.88318 1.20514 0.80066 0.83138 0.85523 1.90666 1.55219 1.68288 1.27894 1.48249 1.23759 1.30729 1.31601 1.21920 0.89308 1.01110 0.88824 1.22512 0.96112 0.91132 0.99331 1.61508 1.02647 1.32647 1.27097 1.21844 0.89099 0.96949 1.00561 1.19631 0.83281 0.89526 0.84496 1.90490 1.51252 1.45557 1.58178 1.41944 1.08421 1.11852 1.59058 1.20529 0.97955 0.88103 1.44544 0.88278 1.26509 0.91476 1.06752 0.96408 1.70908 1.35966 1.02225 1.44848 0.83133 0.76294 0.72210 0.76657 1.20421 1.21021 1.20983 1.22651 0.92290 1.02796 0.91067 1.21755 0.94786 0.87422 0.96302 1.22160 0.93059 0.99365 1.00430 0.94108 0.89697 0.93958 0.90111 0.91140 0.90839 0.90266 0.90167 0.89385 0.89422 0.94639 0.89243 0.93513 0.79191 0.92784 0.95492 0.86742 0.90322 0.88925 0.90094 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.85 101.05 1.10 1.29 16 2 O -0.38 -3.57 10.42 -35.23 -0.37 -3.94 16 3 C 0.08 0.73 3.35 -25.07 -0.08 0.65 16 4 H 0.07 0.62 7.82 -51.93 -0.41 0.21 16 5 C -0.14 -1.01 6.62 -24.74 -0.16 -1.17 16 6 C -0.11 -0.79 6.35 -25.07 -0.16 -0.95 16 7 C -0.11 -1.00 2.54 -90.65 -0.23 -1.23 16 8 H 0.10 0.70 6.15 -51.93 -0.32 0.38 16 9 C 0.52 6.47 6.71 -10.99 -0.07 6.40 16 10 O -0.54 -8.69 14.94 5.56 0.08 -8.61 16 11 N -0.61 -7.48 3.01 -172.47 -0.52 -8.00 16 12 C 0.11 1.08 6.48 -3.60 -0.02 1.06 16 13 C 0.04 0.43 5.62 -3.70 -0.02 0.41 16 14 N -0.51 -8.05 4.37 -235.77 -1.03 -9.08 16 15 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16 16 C 0.44 10.17 7.44 -10.99 -0.08 10.09 16 17 O -0.57 -14.95 13.91 5.54 0.08 -14.87 16 18 N -0.57 -14.15 5.28 -10.96 -0.06 -14.21 16 19 C -0.38 -10.58 9.68 -14.93 -0.14 -10.72 16 20 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 21 C -0.01 -0.24 5.50 -17.47 -0.10 -0.34 16 22 N -0.90 -24.96 13.68 55.50 0.76 -24.20 16 23 Si 1.09 24.06 29.92 -169.99 -5.09 18.98 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 27 C 0.04 0.65 5.26 -3.70 -0.02 0.63 16 28 C 0.12 1.73 6.61 -3.61 -0.02 1.71 16 29 C -0.11 -1.07 6.10 -25.61 -0.16 -1.23 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.04 0.25 8.11 -51.93 -0.42 -0.17 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.63 7.85 -51.93 -0.41 0.22 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.59 5.48 -51.93 -0.28 0.31 16 39 H 0.09 0.84 7.99 -51.93 -0.41 0.42 16 40 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 1.33 7.97 -51.93 -0.41 0.92 16 42 H 0.05 0.74 8.12 -51.93 -0.42 0.31 16 43 H 0.38 8.53 6.73 -40.82 -0.27 8.26 16 44 H 0.26 6.94 6.78 -40.82 -0.28 6.66 16 45 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.11 2.24 5.77 -51.93 -0.30 1.94 16 47 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 48 H 0.09 1.39 7.04 -51.93 -0.37 1.03 16 49 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 50 H 0.09 1.05 6.65 -51.93 -0.35 0.71 16 LS Contribution 392.35 15.07 5.91 5.91 Total: -1.00 -34.07 392.35 -8.48 -42.55 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -8.05 Total: 8.11 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -0.21 Total: 7.36 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.85 Total: -55.49 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.21 Total: -27.42 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -5.09 Total: 18.98 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.07 -8.48 -42.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113046910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.854 kcal (2) G-P(sol) polarization free energy of solvation -34.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds