Wall clock time and date at job start Sat Apr 11 2020 05:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42894 * 114.00261 * 2 1 4 4 H 1.09005 * 110.43478 * 27.46246 * 3 2 1 5 5 C 1.54885 * 110.60176 * 264.84240 * 3 2 1 6 6 C 1.54888 * 102.75015 * 203.32273 * 5 3 2 7 7 C 1.54274 * 104.19448 * 37.94530 * 6 5 3 8 8 H 1.08999 * 110.07372 * 95.69691 * 7 6 5 9 9 C 1.50697 * 110.03166 * 217.10525 * 7 6 5 10 10 O 1.21277 * 119.99982 * 95.14584 * 9 7 6 11 11 N 1.34775 * 119.99984 * 275.14364 * 9 7 6 12 12 C 1.47087 * 120.88047 * 355.08005 * 11 9 7 13 13 C 1.53236 * 108.51783 * 231.20318 * 12 11 9 14 14 N 1.46899 * 109.34378 * 306.17031 * 13 12 11 15 15 C 1.46900 * 111.00056 * 187.25475 * 14 13 12 16 16 C 1.50700 * 109.46981 * 169.99905 * 15 14 13 17 17 O 1.21297 * 120.00307 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00298 * 180.02562 * 16 15 14 19 19 C 1.37100 * 120.00492 * 180.02562 * 18 16 15 20 20 H 1.07998 * 119.99745 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00186 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99890 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00139 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47130 * 179.97438 * 23 21 19 25 25 H 1.48501 * 109.47025 * 59.99504 * 23 21 19 26 26 H 1.48504 * 109.46729 * 300.00011 * 23 21 19 27 27 C 1.46897 * 111.26836 * 63.10196 * 14 13 12 28 28 C 1.47076 * 120.88423 * 175.09584 * 11 9 7 29 29 C 1.53874 * 106.59761 * 336.38752 * 7 6 5 30 30 H 1.09001 * 109.46780 * 59.99007 * 1 2 3 31 31 H 1.08991 * 109.47332 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46381 * 300.00195 * 1 2 3 33 33 H 1.08996 * 110.75926 * 321.64270 * 5 3 2 34 34 H 1.09004 * 110.75932 * 84.82834 * 5 3 2 35 35 H 1.08993 * 110.49104 * 279.26915 * 6 5 3 36 36 H 1.09006 * 110.48964 * 156.62018 * 6 5 3 37 37 H 1.09001 * 109.62977 * 111.49590 * 12 11 9 38 38 H 1.08999 * 109.62730 * 350.90980 * 12 11 9 39 39 H 1.09004 * 109.49408 * 186.21011 * 13 12 11 40 40 H 1.09004 * 109.49399 * 66.12764 * 13 12 11 41 41 H 1.08994 * 109.47272 * 50.00179 * 15 14 13 42 42 H 1.09001 * 109.47120 * 289.99458 * 15 14 13 43 43 H 0.97006 * 119.99457 * 359.97438 * 18 16 15 44 44 H 0.97004 * 119.99988 * 0.02562 * 22 21 19 45 45 H 1.08999 * 109.49386 * 56.86380 * 27 14 13 46 46 H 1.09006 * 109.49133 * 176.93803 * 27 14 13 47 47 H 1.09001 * 109.63501 * 248.50548 * 28 11 9 48 48 H 1.08999 * 109.62758 * 9.08749 * 28 11 9 49 49 H 1.08997 * 110.03450 * 119.28249 * 29 7 6 50 50 H 1.08993 * 110.03595 * 240.71890 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3372 2.0217 0.4711 5 6 2.3511 1.7502 -1.4439 6 6 3.4586 2.8102 -1.2227 7 6 4.2941 2.2462 -0.0549 8 1 5.1570 1.7031 -0.4403 9 6 4.7494 3.3677 0.8429 10 8 4.1068 3.6521 1.8313 11 7 5.8707 4.0545 0.5474 12 6 6.7225 3.6583 -0.5844 13 6 8.1670 3.5373 -0.0873 14 7 8.5591 4.7872 0.5775 15 6 9.9885 4.7774 0.9162 16 6 10.4073 6.1529 1.3672 17 8 9.5951 7.0532 1.4025 18 7 11.6847 6.3833 1.7303 19 6 12.0656 7.6346 2.1411 20 1 11.3422 8.4359 2.1733 21 6 13.3826 7.8722 2.5150 22 7 14.2629 6.8973 2.4753 23 14 13.9018 9.5773 3.0740 24 1 15.3469 9.5674 3.4158 25 1 13.1132 9.9674 4.2703 26 1 13.6578 10.5522 1.9807 27 6 7.7374 5.0374 1.7691 28 6 6.2753 5.2199 1.3482 29 6 3.3733 1.2895 0.7226 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 2.7303 0.9113 -2.0273 34 1 1.4802 2.1927 -1.9276 35 1 3.0194 3.7695 -0.9491 36 1 4.0733 2.9122 -2.1171 37 1 6.6668 4.4149 -1.3671 38 1 6.3882 2.6974 -0.9754 39 1 8.8286 3.3525 -0.9336 40 1 8.2404 2.7109 0.6196 41 1 10.5679 4.4907 0.0386 42 1 10.1668 4.0619 1.7190 43 1 12.3343 5.6635 1.7017 44 1 13.9934 6.0119 2.1846 45 1 7.8168 4.1902 2.4502 46 1 8.0874 5.9406 2.2692 47 1 6.1766 6.1266 0.7513 48 1 5.6453 5.2915 2.2348 49 1 3.7888 0.2818 0.7137 50 1 3.2557 1.6363 1.7491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113046910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:03 Heat of formation + Delta-G solvation = -129.625180 kcal Electronic energy + Delta-G solvation = -29944.076447 eV Core-core repulsion = 25777.378787 eV Total energy + Delta-G solvation = -4166.697661 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.70247 -40.57677 -39.60068 -38.67473 -36.73954 -36.42807 -35.48721 -33.15954 -32.38425 -30.56396 -29.87135 -29.35363 -27.25814 -26.89454 -25.51848 -24.86255 -23.19308 -21.82322 -21.64286 -21.26575 -19.95995 -19.65468 -18.77800 -18.13273 -17.62294 -17.27226 -16.87075 -16.78564 -16.49689 -16.05205 -15.86137 -15.76335 -15.67495 -15.39808 -15.33655 -15.15648 -14.62509 -14.48778 -14.25483 -14.01506 -13.53553 -13.34793 -13.29446 -12.97901 -12.79304 -12.77618 -12.56328 -12.46106 -12.29715 -12.27071 -12.23432 -12.17253 -11.92250 -11.86226 -11.73451 -11.50934 -11.46863 -10.79755 -10.49233 -10.39471 -10.09160 -9.82380 -9.29116 -8.91346 -6.05152 1.50707 1.52857 1.54780 1.82373 1.85287 2.01911 2.38802 2.65324 2.80438 3.16681 3.21155 3.31915 3.53876 3.56420 3.82761 3.92645 4.02820 4.11443 4.12228 4.18209 4.27383 4.28996 4.34110 4.39567 4.42218 4.44530 4.48944 4.52412 4.55249 4.59084 4.66109 4.73484 4.78705 4.82243 4.86498 4.92385 4.99195 5.02438 5.07049 5.21094 5.24320 5.39017 5.58622 5.81021 5.97750 6.07090 6.26880 6.37784 6.59165 6.76627 7.06835 7.45885 7.94979 8.56433 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.039716 B = 0.001835 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.841005 B =15251.345382 C =15449.173207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.081 3.919 4 H 0.060 0.940 5 C -0.134 4.134 6 C -0.103 4.103 7 C -0.103 4.103 8 H 0.129 0.871 9 C 0.516 3.484 10 O -0.587 6.587 11 N -0.609 5.609 12 C 0.110 3.890 13 C 0.036 3.964 14 N -0.530 5.530 15 C 0.059 3.941 16 C 0.444 3.556 17 O -0.608 6.608 18 N -0.588 5.588 19 C -0.408 4.408 20 H 0.073 0.927 21 C -0.042 4.042 22 N -0.917 5.917 23 Si 1.132 2.868 24 H -0.273 1.273 25 H -0.275 1.275 26 H -0.273 1.273 27 C 0.050 3.950 28 C 0.128 3.872 29 C -0.113 4.113 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.041 0.959 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.116 0.884 40 H 0.042 0.958 41 H 0.121 0.879 42 H 0.064 0.936 43 H 0.384 0.616 44 H 0.259 0.741 45 H 0.027 0.973 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.078 0.922 49 H 0.087 0.913 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.313 -16.555 -11.329 29.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.320 6.320 3 C 0.023 3.977 4 H 0.078 0.922 5 C -0.171 4.171 6 C -0.141 4.141 7 C -0.124 4.124 8 H 0.146 0.854 9 C 0.306 3.694 10 O -0.468 6.468 11 N -0.342 5.342 12 C -0.012 4.012 13 C -0.092 4.092 14 N -0.255 5.255 15 C -0.072 4.072 16 C 0.231 3.769 17 O -0.493 6.493 18 N -0.227 5.227 19 C -0.538 4.538 20 H 0.091 0.909 21 C -0.240 4.240 22 N -0.557 5.557 23 Si 0.952 3.048 24 H -0.198 1.198 25 H -0.200 1.200 26 H -0.198 1.198 27 C -0.079 4.079 28 C 0.005 3.995 29 C -0.151 4.151 30 H 0.071 0.929 31 H 0.116 0.884 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.147 0.853 39 H 0.134 0.866 40 H 0.061 0.939 41 H 0.138 0.862 42 H 0.082 0.918 43 H 0.218 0.782 44 H 0.070 0.930 45 H 0.045 0.955 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.106 0.894 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.862 -14.690 -10.582 27.623 hybrid contribution -0.832 -1.325 0.591 1.672 sum -21.694 -16.015 -9.991 28.756 Atomic orbital electron populations 1.22953 0.79855 1.03783 1.00574 1.87862 1.21116 1.27956 1.95109 1.23050 0.94214 0.84137 0.96322 0.92168 1.22919 0.98979 0.99082 0.96134 1.22227 0.96899 0.98050 0.96907 1.21963 1.00912 0.93836 0.95712 0.85377 1.21215 0.79414 0.83465 0.85304 1.90652 1.56509 1.69609 1.30008 1.48321 1.24163 1.29788 1.31900 1.22200 0.87869 1.03374 0.87714 1.22719 0.97603 0.88956 0.99910 1.61483 1.01635 1.35820 1.26554 1.21739 0.90440 0.92768 1.02213 1.20797 0.82134 0.91625 0.82302 1.90477 1.52132 1.47715 1.59000 1.41996 1.09468 1.11267 1.59973 1.20498 0.98012 0.89058 1.46188 0.90914 1.27760 0.91194 1.09367 0.95701 1.70974 1.36281 1.02578 1.45850 0.82639 0.76279 0.68893 0.76948 1.19781 1.20048 1.19804 1.22393 0.93265 1.00775 0.91494 1.21435 0.93535 0.88398 0.96155 1.22127 0.94093 0.99717 0.99187 0.92923 0.88368 0.94031 0.89076 0.90113 0.92374 0.87543 0.89560 0.85350 0.86607 0.93932 0.86158 0.91826 0.78194 0.92975 0.95507 0.90859 0.91205 0.90325 0.89410 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.85 113.37 1.23 1.51 16 2 O -0.40 -6.92 10.42 -148.98 -1.55 -8.47 16 3 C 0.08 1.30 3.35 31.67 0.11 1.41 16 4 H 0.06 1.06 7.82 -2.38 -0.02 1.04 16 5 C -0.13 -1.49 6.62 31.88 0.21 -1.28 16 6 C -0.10 -1.20 6.35 31.67 0.20 -1.00 16 7 C -0.10 -1.56 2.54 -10.81 -0.03 -1.59 16 8 H 0.13 1.19 6.15 -2.39 -0.01 1.18 16 9 C 0.52 12.34 6.71 87.66 0.59 12.92 16 10 O -0.59 -19.31 14.94 -3.02 -0.05 -19.35 16 11 N -0.61 -14.03 3.01 -817.95 -2.46 -16.49 16 12 C 0.11 1.71 6.48 86.35 0.56 2.27 16 13 C 0.04 0.67 5.62 86.38 0.49 1.16 16 14 N -0.53 -15.70 4.37 -899.83 -3.93 -19.64 16 15 C 0.06 1.91 5.45 85.56 0.47 2.37 16 16 C 0.44 20.46 7.44 87.66 0.65 21.12 16 17 O -0.61 -32.84 13.91 -3.08 -0.04 -32.88 16 18 N -0.59 -29.32 5.28 -306.98 -1.62 -30.94 16 19 C -0.41 -23.14 9.68 84.04 0.81 -22.33 16 20 H 0.07 4.44 7.16 -2.91 -0.02 4.42 16 21 C -0.04 -2.27 5.50 84.93 0.47 -1.80 16 22 N -0.92 -50.85 13.68 21.66 0.30 -50.56 16 23 Si 1.13 48.49 29.92 68.60 2.05 50.54 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 27 C 0.05 1.63 5.26 86.38 0.45 2.08 16 28 C 0.13 3.79 6.61 86.35 0.57 4.36 16 29 C -0.11 -2.04 6.10 31.32 0.19 -1.85 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.04 0.47 8.11 -2.38 -0.02 0.45 16 33 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.06 0.89 7.85 -2.39 -0.02 0.87 16 36 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.13 0.99 5.48 -2.39 -0.01 0.97 16 39 H 0.12 1.60 7.99 -2.39 -0.02 1.58 16 40 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.12 3.17 7.97 -2.39 -0.02 3.15 16 42 H 0.06 1.87 8.12 -2.39 -0.02 1.85 16 43 H 0.38 17.53 6.73 -92.70 -0.62 16.91 16 44 H 0.26 13.84 6.78 -92.71 -0.63 13.22 16 45 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.07 3.02 5.77 -2.38 -0.01 3.01 16 47 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.08 2.52 7.04 -2.39 -0.02 2.50 16 49 H 0.09 1.43 8.07 -2.39 -0.02 1.41 16 50 H 0.06 1.48 6.65 -2.39 -0.02 1.46 16 Total: -1.00 -77.57 392.35 0.13 -77.44 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.47 Total: 31.01 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 6.97 Total: 19.34 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -7.72 Total: -117.63 kcal Atomic # 8 Polarization: -59.07 SS G_CDS: -1.64 Total: -60.71 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.05 Total: 50.54 kcal Total: -77.57 0.13 -77.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113046910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.184 kcal (2) G-P(sol) polarization free energy of solvation -77.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds