Wall clock time and date at job start Sat Apr 11 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00126 * 2 1 4 4 H 1.09001 * 109.47083 * 30.00233 * 3 2 1 5 5 C 1.50702 * 109.47404 * 270.00273 * 3 2 1 6 6 O 1.21284 * 120.00083 * 349.94533 * 5 3 2 7 7 N 1.34771 * 120.00225 * 169.94528 * 5 3 2 8 8 C 1.47089 * 120.87948 * 4.09264 * 7 5 3 9 9 C 1.53696 * 108.27391 * 128.75552 * 8 7 5 10 10 N 1.46905 * 109.25641 * 54.08265 * 9 8 7 11 11 C 1.46897 * 110.99781 * 172.60490 * 10 9 8 12 12 C 1.50698 * 109.47342 * 294.30493 * 11 10 9 13 13 O 1.21294 * 120.00355 * 359.97438 * 12 11 10 14 14 N 1.34785 * 120.00199 * 180.02562 * 12 11 10 15 15 C 1.37096 * 119.99953 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00171 * 359.97438 * 15 14 12 17 17 C 1.38946 * 119.99684 * 179.97438 * 15 14 12 18 18 N 1.31415 * 120.00106 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99795 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46761 * 60.00603 * 19 17 15 21 21 H 1.48503 * 109.46907 * 179.97438 * 19 17 15 22 22 H 1.48489 * 109.47648 * 300.00173 * 19 17 15 23 23 C 1.46896 * 111.26919 * 296.75652 * 10 9 8 24 24 C 1.47076 * 120.88234 * 184.37261 * 7 5 3 25 25 C 1.53000 * 109.47199 * 150.00285 * 3 2 1 26 26 C 1.53783 * 113.61517 * 36.82084 * 25 3 2 27 27 C 1.53779 * 87.08281 * 220.01882 * 26 25 3 28 28 C 1.53783 * 113.61403 * 299.32512 * 25 3 2 29 29 H 1.08993 * 109.47491 * 59.99561 * 1 2 3 30 30 H 1.09005 * 109.47083 * 299.99646 * 1 2 3 31 31 H 1.09005 * 109.47361 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.62921 * 248.52079 * 8 7 5 33 33 H 1.08997 * 109.62587 * 9.10598 * 8 7 5 34 34 H 1.09000 * 109.64941 * 294.07824 * 9 8 7 35 35 H 1.08995 * 109.41886 * 173.94730 * 9 8 7 36 36 H 1.08997 * 109.47445 * 54.30299 * 11 10 9 37 37 H 1.09002 * 109.47155 * 174.30047 * 11 10 9 38 38 H 0.97004 * 119.99601 * 359.97438 * 14 12 11 39 39 H 0.97001 * 119.99733 * 179.97438 * 18 17 15 40 40 H 1.09008 * 109.49098 * 303.14286 * 23 10 9 41 41 H 1.09005 * 109.49281 * 183.06927 * 23 10 9 42 42 H 1.08996 * 109.62925 * 350.89383 * 24 7 5 43 43 H 1.09006 * 109.62867 * 111.47783 * 24 7 5 44 44 H 1.09000 * 112.84883 * 168.12880 * 25 3 2 45 45 H 1.09001 * 113.61390 * 334.57172 * 26 25 3 46 46 H 1.09003 * 113.61481 * 105.46978 * 26 25 3 47 47 H 1.09001 * 113.61588 * 270.88817 * 27 26 25 48 48 H 1.08997 * 113.68847 * 139.99020 * 27 26 25 49 49 H 1.09001 * 113.61709 * 254.52854 * 28 25 3 50 50 H 1.08997 * 113.61212 * 25.35052 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 2.0676 0.9838 -2.3373 7 7 2.5604 3.0423 -1.6730 8 6 2.8308 3.9821 -0.5743 9 6 4.1900 4.6505 -0.8353 10 7 4.1860 5.2488 -2.1769 11 6 5.3986 6.0473 -2.4008 12 6 5.3978 7.2333 -1.4712 13 8 4.4774 7.3977 -0.6984 14 7 6.4194 8.1122 -1.4991 15 6 6.4184 9.1915 -0.6537 16 1 5.5988 9.3378 0.0343 17 6 7.4718 10.0971 -0.6821 18 7 8.4687 9.9193 -1.5196 19 14 7.4701 11.5681 0.4693 20 1 7.4416 11.0950 1.8766 21 1 8.6963 12.3747 0.2435 22 1 6.2716 12.4035 0.2035 23 6 4.0314 4.2233 -3.2173 24 6 2.6717 3.5358 -3.0541 25 6 3.3589 1.2632 0.7212 26 6 4.1525 -0.0295 0.4682 27 6 4.5464 0.0146 1.9541 28 6 3.2582 0.8206 2.1905 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 2.0477 4.7395 -0.5392 33 1 2.8630 3.4406 0.3711 34 1 4.9830 3.9054 -0.7716 35 1 4.3603 5.4281 -0.0907 36 1 6.2785 5.4340 -2.2065 37 1 5.4190 6.3951 -3.4336 38 1 7.1552 7.9809 -2.1173 39 1 9.2039 10.5518 -1.5397 40 1 4.8267 3.4842 -3.1205 41 1 4.0868 4.6912 -4.2003 42 1 2.5987 2.6991 -3.7488 43 1 1.8735 4.2511 -3.2527 44 1 3.9441 2.1715 0.5779 45 1 3.5261 -0.8826 0.2076 46 1 4.9951 0.1012 -0.2109 47 1 5.4574 0.5809 2.1477 48 1 4.5447 -0.9627 2.4367 49 1 3.3787 1.6376 2.9019 50 1 2.3864 0.2011 2.4011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113164177.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:14 Heat of formation + Delta-G solvation = -72.479108 kcal Electronic energy + Delta-G solvation = -30910.075677 eV Core-core repulsion = 26745.856056 eV Total energy + Delta-G solvation = -4164.219621 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.88037 -39.20146 -38.40162 -37.47485 -36.77573 -34.55481 -33.81896 -31.52769 -31.29842 -29.88241 -28.64330 -26.59535 -25.90144 -25.65104 -24.23859 -23.76602 -23.25821 -21.22284 -19.67008 -19.33377 -19.05310 -17.92982 -17.50384 -16.88623 -16.50212 -16.11582 -15.69567 -15.54706 -15.11037 -14.89911 -14.82004 -14.65697 -14.50967 -14.10994 -13.89581 -13.68373 -13.61907 -13.36158 -13.05806 -12.58129 -12.47334 -12.26482 -12.10179 -11.97852 -11.68218 -11.63408 -11.56257 -11.29140 -11.19454 -11.15422 -10.87019 -10.77174 -10.72432 -10.53080 -10.47529 -10.37861 -10.25504 -9.51351 -9.30942 -8.88460 -8.41147 -8.03076 -7.93408 -6.45763 -3.86892 2.47282 2.76852 3.16638 3.23155 3.26877 3.47835 3.83752 3.90464 4.12625 4.18965 4.39358 4.45756 4.57934 4.66243 4.81870 4.87335 4.95147 4.99108 5.05544 5.10923 5.18492 5.20121 5.22821 5.31624 5.37693 5.41760 5.44229 5.48001 5.57867 5.67917 5.69867 5.73035 5.76450 5.82383 5.85972 5.86575 6.00225 6.09332 6.13186 6.21170 6.33405 6.42626 6.75784 7.10034 7.26033 7.35219 7.50904 8.01392 8.07458 8.56682 9.13370 9.49550 10.00615 10.71757 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016979 B = 0.002510 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.713959 B =11153.017984 C =11936.499685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.085 3.915 4 H 0.086 0.914 5 C 0.495 3.505 6 O -0.533 6.533 7 N -0.610 5.610 8 C 0.105 3.895 9 C 0.039 3.961 10 N -0.514 5.514 11 C 0.046 3.954 12 C 0.443 3.557 13 O -0.579 6.579 14 N -0.562 5.562 15 C -0.300 4.300 16 H 0.103 0.897 17 C 0.023 3.977 18 N -0.901 5.901 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.041 3.959 24 C 0.118 3.882 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.142 4.142 28 C -0.129 4.129 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.028 0.972 35 H 0.117 0.883 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.035 0.965 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.111 0.889 45 H 0.095 0.905 46 H 0.063 0.937 47 H 0.080 0.920 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.932 -17.949 2.770 20.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.270 6.270 3 C 0.023 3.977 4 H 0.104 0.896 5 C 0.282 3.718 6 O -0.409 6.409 7 N -0.346 5.346 8 C -0.018 4.018 9 C -0.089 4.089 10 N -0.238 5.238 11 C -0.085 4.085 12 C 0.228 3.772 13 O -0.464 6.464 14 N -0.199 5.199 15 C -0.430 4.430 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.542 5.542 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.088 4.088 24 C -0.004 4.004 25 C -0.137 4.137 26 C -0.163 4.163 27 C -0.179 4.179 28 C -0.166 4.166 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.046 0.954 35 H 0.134 0.866 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.094 0.906 44 H 0.129 0.871 45 H 0.114 0.886 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.750 -18.014 2.742 21.156 hybrid contribution 1.091 0.611 0.027 1.250 sum -9.660 -17.403 2.769 20.096 Atomic orbital electron populations 1.22859 0.80828 1.03108 1.00008 1.87956 1.19732 1.24920 1.94368 1.21856 0.97031 0.86496 0.92284 0.89610 1.21307 0.76857 0.81489 0.92122 1.90674 1.50926 1.52849 1.46443 1.48301 1.68335 1.09989 1.07981 1.22204 0.98475 0.92039 0.89057 1.22718 0.94761 0.98492 0.92930 1.61495 1.38110 1.22400 1.01837 1.21855 0.90852 0.95046 1.00743 1.19700 0.84629 0.85468 0.87363 1.90470 1.36637 1.76552 1.42723 1.41873 1.19999 1.22452 1.35540 1.19639 1.06777 1.00586 1.15956 0.87920 1.25268 0.95290 0.99436 0.97889 1.69604 1.09903 1.37956 1.36762 0.85922 0.77563 0.80610 0.80152 1.19903 1.20979 1.19866 1.22502 0.96481 0.93444 0.96375 1.21691 0.97303 0.98549 0.82899 1.22922 0.93737 1.00496 0.96594 1.22805 0.99307 0.97698 0.96446 1.22791 0.97675 1.00566 0.96873 1.22896 0.98878 1.00110 0.94725 0.93843 0.93912 0.89253 0.89899 0.89304 0.95414 0.86554 0.93437 0.89162 0.77475 0.91772 0.94679 0.89502 0.88926 0.90596 0.87124 0.88648 0.91851 0.90164 0.91344 0.91136 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.81 101.05 1.09 1.34 16 2 O -0.35 -4.01 8.02 -54.94 -0.44 -4.45 16 3 C 0.08 0.91 1.69 -27.88 -0.05 0.87 16 4 H 0.09 0.77 7.31 -51.93 -0.38 0.39 16 5 C 0.49 6.65 7.03 -10.99 -0.08 6.57 16 6 O -0.53 -8.94 15.98 -14.15 -0.23 -9.16 16 7 N -0.61 -7.74 3.00 -172.18 -0.52 -8.26 16 8 C 0.10 1.27 5.74 -3.36 -0.02 1.25 16 9 C 0.04 0.58 5.26 -3.46 -0.02 0.56 16 10 N -0.51 -8.01 4.37 -235.47 -1.03 -9.04 16 11 C 0.05 0.78 5.45 -4.98 -0.03 0.76 16 12 C 0.44 9.88 7.44 -10.98 -0.08 9.80 16 13 O -0.58 -14.56 13.91 5.55 0.08 -14.48 16 14 N -0.56 -13.71 5.29 -10.96 -0.06 -13.77 16 15 C -0.30 -8.09 9.68 -14.94 -0.14 -8.23 16 16 H 0.10 2.89 7.16 -52.49 -0.38 2.51 16 17 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.02 13.05 55.50 0.72 -23.29 16 19 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 C 0.04 0.52 5.62 -3.70 -0.02 0.50 16 24 C 0.12 1.48 6.61 -3.61 -0.02 1.45 16 25 C -0.12 -1.17 2.82 -89.81 -0.25 -1.42 16 26 C -0.13 -1.29 7.48 -25.92 -0.19 -1.48 16 27 C -0.14 -1.20 8.08 -25.92 -0.21 -1.41 16 28 C -0.13 -1.06 7.55 -25.92 -0.20 -1.26 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.29 8.09 -51.93 -0.42 -0.13 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 0.88 4.30 -51.93 -0.22 0.65 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.12 2.05 5.77 -51.93 -0.30 1.75 16 36 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 37 H 0.09 1.39 7.97 -51.93 -0.41 0.97 16 38 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 39 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 40 H 0.03 0.46 8.14 -51.92 -0.42 0.03 16 41 H 0.09 0.99 7.99 -51.93 -0.41 0.57 16 42 H 0.09 1.18 7.04 -51.93 -0.37 0.81 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.11 1.10 5.92 -51.93 -0.31 0.79 16 45 H 0.10 1.09 6.96 -51.93 -0.36 0.72 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.09 0.71 7.80 -51.93 -0.41 0.30 16 LS Contribution 393.30 15.07 5.93 5.93 Total: -1.00 -32.02 393.30 -8.95 -40.98 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -8.07 Total: 10.22 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -0.32 Total: 9.81 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.88 Total: -54.36 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.59 Total: -28.10 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.02 -8.95 -40.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113164177.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.502 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds