Wall clock time and date at job start Sat Apr 11 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00126 * 2 1 4 4 H 1.09001 * 109.47083 * 30.00233 * 3 2 1 5 5 C 1.50702 * 109.47404 * 270.00273 * 3 2 1 6 6 O 1.21284 * 120.00083 * 349.94533 * 5 3 2 7 7 N 1.34771 * 120.00225 * 169.94528 * 5 3 2 8 8 C 1.47089 * 120.87948 * 4.09264 * 7 5 3 9 9 C 1.53696 * 108.27391 * 128.75552 * 8 7 5 10 10 N 1.46905 * 109.25641 * 54.08265 * 9 8 7 11 11 C 1.46897 * 110.99781 * 172.60490 * 10 9 8 12 12 C 1.50698 * 109.47342 * 294.30493 * 11 10 9 13 13 O 1.21294 * 120.00355 * 359.97438 * 12 11 10 14 14 N 1.34785 * 120.00199 * 180.02562 * 12 11 10 15 15 C 1.37096 * 119.99953 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00171 * 359.97438 * 15 14 12 17 17 C 1.38946 * 119.99684 * 179.97438 * 15 14 12 18 18 N 1.31415 * 120.00106 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99795 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46761 * 60.00603 * 19 17 15 21 21 H 1.48503 * 109.46907 * 179.97438 * 19 17 15 22 22 H 1.48489 * 109.47648 * 300.00173 * 19 17 15 23 23 C 1.46896 * 111.26919 * 296.75652 * 10 9 8 24 24 C 1.47076 * 120.88234 * 184.37261 * 7 5 3 25 25 C 1.53000 * 109.47199 * 150.00285 * 3 2 1 26 26 C 1.53783 * 113.61517 * 36.82084 * 25 3 2 27 27 C 1.53779 * 87.08281 * 220.01882 * 26 25 3 28 28 C 1.53783 * 113.61403 * 299.32512 * 25 3 2 29 29 H 1.08993 * 109.47491 * 59.99561 * 1 2 3 30 30 H 1.09005 * 109.47083 * 299.99646 * 1 2 3 31 31 H 1.09005 * 109.47361 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.62921 * 248.52079 * 8 7 5 33 33 H 1.08997 * 109.62587 * 9.10598 * 8 7 5 34 34 H 1.09000 * 109.64941 * 294.07824 * 9 8 7 35 35 H 1.08995 * 109.41886 * 173.94730 * 9 8 7 36 36 H 1.08997 * 109.47445 * 54.30299 * 11 10 9 37 37 H 1.09002 * 109.47155 * 174.30047 * 11 10 9 38 38 H 0.97004 * 119.99601 * 359.97438 * 14 12 11 39 39 H 0.97001 * 119.99733 * 179.97438 * 18 17 15 40 40 H 1.09008 * 109.49098 * 303.14286 * 23 10 9 41 41 H 1.09005 * 109.49281 * 183.06927 * 23 10 9 42 42 H 1.08996 * 109.62925 * 350.89383 * 24 7 5 43 43 H 1.09006 * 109.62867 * 111.47783 * 24 7 5 44 44 H 1.09000 * 112.84883 * 168.12880 * 25 3 2 45 45 H 1.09001 * 113.61390 * 334.57172 * 26 25 3 46 46 H 1.09003 * 113.61481 * 105.46978 * 26 25 3 47 47 H 1.09001 * 113.61588 * 270.88817 * 27 26 25 48 48 H 1.08997 * 113.68847 * 139.99020 * 27 26 25 49 49 H 1.09001 * 113.61709 * 254.52854 * 28 25 3 50 50 H 1.08997 * 113.61212 * 25.35052 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 2.0676 0.9838 -2.3373 7 7 2.5604 3.0423 -1.6730 8 6 2.8308 3.9821 -0.5743 9 6 4.1900 4.6505 -0.8353 10 7 4.1860 5.2488 -2.1769 11 6 5.3986 6.0473 -2.4008 12 6 5.3978 7.2333 -1.4712 13 8 4.4774 7.3977 -0.6984 14 7 6.4194 8.1122 -1.4991 15 6 6.4184 9.1915 -0.6537 16 1 5.5988 9.3378 0.0343 17 6 7.4718 10.0971 -0.6821 18 7 8.4687 9.9193 -1.5196 19 14 7.4701 11.5681 0.4693 20 1 7.4416 11.0950 1.8766 21 1 8.6963 12.3747 0.2435 22 1 6.2716 12.4035 0.2035 23 6 4.0314 4.2233 -3.2173 24 6 2.6717 3.5358 -3.0541 25 6 3.3589 1.2632 0.7212 26 6 4.1525 -0.0295 0.4682 27 6 4.5464 0.0146 1.9541 28 6 3.2582 0.8206 2.1905 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 2.0477 4.7395 -0.5392 33 1 2.8630 3.4406 0.3711 34 1 4.9830 3.9054 -0.7716 35 1 4.3603 5.4281 -0.0907 36 1 6.2785 5.4340 -2.2065 37 1 5.4190 6.3951 -3.4336 38 1 7.1552 7.9809 -2.1173 39 1 9.2039 10.5518 -1.5397 40 1 4.8267 3.4842 -3.1205 41 1 4.0868 4.6912 -4.2003 42 1 2.5987 2.6991 -3.7488 43 1 1.8735 4.2511 -3.2527 44 1 3.9441 2.1715 0.5779 45 1 3.5261 -0.8826 0.2076 46 1 4.9951 0.1012 -0.2109 47 1 5.4574 0.5809 2.1477 48 1 4.5447 -0.9627 2.4367 49 1 3.3787 1.6376 2.9019 50 1 2.3864 0.2011 2.4011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113164177.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:13 Heat of formation + Delta-G solvation = -94.000449 kcal Electronic energy + Delta-G solvation = -30911.008912 eV Core-core repulsion = 26745.856056 eV Total energy + Delta-G solvation = -4165.152856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.84909 -40.48819 -39.61382 -38.66634 -37.71889 -36.05202 -35.44439 -33.24493 -32.55537 -30.87942 -29.84711 -27.50377 -27.17491 -26.47046 -25.65377 -24.85443 -24.26699 -22.28828 -21.06028 -20.39568 -20.14208 -19.82438 -18.50916 -17.85495 -17.70483 -17.28660 -16.73548 -16.63093 -16.41010 -16.32274 -16.03941 -15.77551 -15.58498 -15.40849 -15.27228 -15.21379 -14.62822 -14.31487 -14.13668 -13.83484 -13.54151 -13.39184 -13.23225 -13.06249 -12.97425 -12.84807 -12.76348 -12.43652 -12.40751 -12.32040 -12.26779 -12.16161 -12.10104 -11.63317 -11.51127 -11.41032 -11.27499 -11.10387 -10.33371 -10.25836 -9.98239 -9.79526 -9.23711 -8.43792 -5.92018 1.41593 1.43789 1.44296 1.54162 1.78714 2.08172 2.29792 2.68805 2.72490 3.23254 3.24935 3.37215 3.61202 3.69647 3.78846 3.88108 3.95329 3.97081 4.08228 4.15148 4.17272 4.24707 4.28596 4.41367 4.45386 4.48639 4.50384 4.52776 4.59724 4.68530 4.72337 4.80050 4.82103 4.89202 4.91643 4.97181 5.02946 5.09038 5.11185 5.28891 5.36590 5.43838 5.60501 5.80196 5.98736 6.05054 6.12140 6.32444 6.63140 7.04111 7.15758 7.59784 8.14524 8.73382 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016979 B = 0.002510 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.713959 B =11153.017984 C =11936.499685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.369 6.369 3 C 0.088 3.912 4 H 0.108 0.892 5 C 0.493 3.507 6 O -0.571 6.571 7 N -0.609 5.609 8 C 0.114 3.886 9 C 0.042 3.958 10 N -0.528 5.528 11 C 0.058 3.942 12 C 0.445 3.555 13 O -0.609 6.609 14 N -0.575 5.575 15 C -0.329 4.329 16 H 0.082 0.918 17 C -0.014 4.014 18 N -0.923 5.923 19 Si 0.991 3.009 20 H -0.270 1.270 21 H -0.274 1.274 22 H -0.272 1.272 23 C 0.047 3.953 24 C 0.118 3.882 25 C -0.121 4.121 26 C -0.132 4.132 27 C -0.136 4.136 28 C -0.119 4.119 29 H 0.030 0.970 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.034 0.966 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.111 0.889 38 H 0.395 0.605 39 H 0.276 0.724 40 H 0.036 0.964 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.110 0.890 45 H 0.082 0.918 46 H 0.051 0.949 47 H 0.084 0.916 48 H 0.076 0.924 49 H 0.083 0.917 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.239 -18.271 3.568 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.287 6.287 3 C 0.026 3.974 4 H 0.125 0.875 5 C 0.282 3.718 6 O -0.450 6.450 7 N -0.343 5.343 8 C -0.008 4.008 9 C -0.087 4.087 10 N -0.253 5.253 11 C -0.073 4.073 12 C 0.232 3.768 13 O -0.495 6.495 14 N -0.213 5.213 15 C -0.458 4.458 16 H 0.100 0.900 17 C -0.214 4.214 18 N -0.564 5.564 19 Si 0.815 3.185 20 H -0.196 1.196 21 H -0.199 1.199 22 H -0.197 1.197 23 C -0.081 4.081 24 C -0.005 4.005 25 C -0.139 4.139 26 C -0.169 4.169 27 C -0.174 4.174 28 C -0.156 4.156 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.131 0.869 34 H 0.052 0.948 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.129 0.871 38 H 0.228 0.772 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.123 0.877 42 H 0.109 0.891 43 H 0.098 0.902 44 H 0.128 0.872 45 H 0.100 0.900 46 H 0.070 0.930 47 H 0.103 0.897 48 H 0.094 0.906 49 H 0.102 0.898 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.059 -18.344 3.536 21.710 hybrid contribution 1.126 0.639 -0.265 1.321 sum -9.934 -17.705 3.271 20.564 Atomic orbital electron populations 1.23028 0.79586 1.04223 1.00436 1.87944 1.21185 1.25241 1.94283 1.21937 0.98006 0.86851 0.90598 0.87477 1.21863 0.75866 0.81115 0.92977 1.90653 1.52712 1.53773 1.47845 1.48358 1.67815 1.09961 1.08187 1.22159 0.96818 0.91961 0.89901 1.22612 0.96463 0.97692 0.91884 1.61480 1.37411 1.23570 1.02886 1.21727 0.92285 0.93200 1.00134 1.20637 0.83206 0.85951 0.87027 1.90452 1.37555 1.77460 1.44009 1.41946 1.20868 1.22685 1.35757 1.19622 1.06926 1.02340 1.16947 0.89990 1.26017 0.94658 1.01546 0.99148 1.69672 1.10239 1.38818 1.37642 0.85016 0.77784 0.77456 0.78278 1.19553 1.19866 1.19744 1.22522 0.96526 0.92781 0.96283 1.21703 0.97317 0.98484 0.82986 1.22957 0.93115 1.00097 0.97750 1.22786 0.98908 0.97636 0.97584 1.22783 0.98081 1.01196 0.95308 1.22866 0.98772 1.00345 0.93618 0.95154 0.91627 0.87960 0.90277 0.86874 0.94769 0.89543 0.91789 0.87060 0.77156 0.91428 0.94577 0.87692 0.89115 0.90197 0.87232 0.89957 0.93006 0.89747 0.90570 0.89838 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.81 113.37 1.23 1.59 16 2 O -0.37 -7.95 8.02 -130.14 -1.04 -8.99 16 3 C 0.09 1.75 1.69 29.85 0.05 1.80 16 4 H 0.11 1.66 7.31 -2.39 -0.02 1.64 16 5 C 0.49 12.82 7.03 87.66 0.62 13.43 16 6 O -0.57 -19.08 15.98 15.80 0.25 -18.82 16 7 N -0.61 -14.71 3.00 -817.05 -2.45 -17.16 16 8 C 0.11 2.60 5.74 86.50 0.50 3.10 16 9 C 0.04 1.20 5.26 86.54 0.46 1.65 16 10 N -0.53 -15.79 4.37 -898.88 -3.93 -19.72 16 11 C 0.06 1.87 5.45 85.56 0.47 2.34 16 12 C 0.44 19.86 7.44 87.66 0.65 20.51 16 13 O -0.61 -31.00 13.91 -3.07 -0.04 -31.05 16 14 N -0.58 -28.33 5.29 -306.98 -1.62 -29.95 16 15 C -0.33 -17.99 9.68 84.04 0.81 -17.18 16 16 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 17 C -0.01 -0.74 5.50 84.92 0.47 -0.27 16 18 N -0.92 -48.97 13.05 21.66 0.28 -48.69 16 19 Si 0.99 41.87 29.55 68.60 2.03 43.90 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 C 0.05 1.12 5.62 86.38 0.49 1.61 16 24 C 0.12 2.80 6.61 86.35 0.57 3.37 16 25 C -0.12 -2.17 2.82 -10.27 -0.03 -2.20 16 26 C -0.13 -2.61 7.48 31.12 0.23 -2.38 16 27 C -0.14 -2.08 8.08 31.12 0.25 -1.83 16 28 C -0.12 -1.68 7.55 31.12 0.23 -1.44 16 29 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.73 8.09 -2.38 -0.02 0.71 16 31 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.11 2.01 4.30 -2.39 -0.01 2.00 16 34 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 3.05 5.77 -2.39 -0.01 3.04 16 36 H 0.06 1.90 8.12 -2.39 -0.02 1.88 16 37 H 0.11 3.18 7.97 -2.39 -0.02 3.16 16 38 H 0.39 18.65 7.90 -92.71 -0.73 17.92 16 39 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 40 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.10 2.13 7.99 -2.38 -0.02 2.11 16 42 H 0.09 2.24 7.04 -2.39 -0.02 2.22 16 43 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 44 H 0.11 1.99 5.92 -2.39 -0.01 1.97 16 45 H 0.08 1.85 6.96 -2.39 -0.02 1.84 16 46 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.09 1.24 7.80 -2.39 -0.02 1.22 16 Total: -1.00 -69.46 393.30 0.68 -68.78 By element: Atomic # 1 Polarization: 37.38 SS G_CDS: 0.22 Total: 37.60 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 6.99 Total: 24.11 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -7.72 Total: -115.52 kcal Atomic # 8 Polarization: -58.03 SS G_CDS: -0.83 Total: -58.86 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -69.46 0.68 -68.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113164177.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.224 kcal (2) G-P(sol) polarization free energy of solvation -69.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds