Wall clock time and date at job start Sat Apr 11 2020 05:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34644 * 116.99818 * 2 1 4 4 O 1.21516 * 119.99841 * 0.02562 * 3 2 1 5 5 N 1.34773 * 120.00178 * 179.97438 * 3 2 1 6 6 C 1.46496 * 120.00159 * 179.97438 * 5 3 2 7 7 C 1.50697 * 109.47216 * 180.02562 * 6 5 3 8 8 O 1.21277 * 120.00069 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99950 * 180.02562 * 7 6 5 10 10 C 1.46921 * 120.63012 * 359.97438 * 9 7 6 11 11 C 1.53194 * 108.77600 * 126.41526 * 10 9 7 12 12 C 1.53041 * 109.31038 * 54.63235 * 11 10 9 13 13 C 1.53035 * 109.54037 * 298.63521 * 12 11 10 14 14 H 1.08995 * 109.52751 * 301.39683 * 13 12 11 15 15 C 1.53008 * 109.49875 * 181.31574 * 13 12 11 16 16 H 1.08992 * 109.99836 * 179.64346 * 15 13 12 17 17 C 1.54322 * 109.87986 * 300.73871 * 15 13 12 18 18 C 1.55165 * 102.93897 * 141.60944 * 17 15 13 19 19 C 1.54911 * 101.58049 * 324.49978 * 18 17 15 20 20 N 1.47016 * 109.87791 * 58.54880 * 15 13 12 21 21 C 1.36938 * 125.65395 * 61.60706 * 20 15 13 22 22 H 1.08003 * 119.99572 * 11.64911 * 21 20 15 23 23 C 1.38806 * 120.00513 * 191.65048 * 21 20 15 24 24 N 1.31621 * 119.99737 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00327 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47567 * 89.99902 * 25 23 21 27 27 H 1.48503 * 109.47357 * 210.00302 * 25 23 21 28 28 H 1.48500 * 109.47099 * 329.99730 * 25 23 21 29 29 C 1.46926 * 120.62741 * 180.02562 * 9 7 6 30 30 H 1.09004 * 109.47183 * 299.99895 * 1 2 3 31 31 H 1.09003 * 109.47181 * 60.00450 * 1 2 3 32 32 H 1.09001 * 109.46879 * 179.97438 * 1 2 3 33 33 H 0.97007 * 119.99822 * 359.97438 * 5 3 2 34 34 H 1.09006 * 109.47158 * 60.00035 * 6 5 3 35 35 H 1.08996 * 109.47659 * 300.00261 * 6 5 3 36 36 H 1.09004 * 109.58622 * 246.20090 * 10 9 7 37 37 H 1.08997 * 109.58611 * 6.62654 * 10 9 7 38 38 H 1.08994 * 109.49614 * 174.58420 * 11 10 9 39 39 H 1.09000 * 109.49642 * 294.65130 * 11 10 9 40 40 H 1.08998 * 109.45910 * 178.61080 * 12 11 10 41 41 H 1.09003 * 109.46095 * 58.65784 * 12 11 10 42 42 H 1.09002 * 110.72176 * 259.96574 * 17 15 13 43 43 H 1.08998 * 110.72453 * 23.24550 * 17 15 13 44 44 H 1.08994 * 111.00229 * 206.42249 * 18 17 15 45 45 H 1.08997 * 111.00136 * 82.57285 * 18 17 15 46 46 H 1.08999 * 110.36347 * 278.16749 * 19 18 17 47 47 H 1.08996 * 110.45755 * 155.90014 * 19 18 17 48 48 H 0.97003 * 120.00383 * 179.97438 * 24 23 21 49 49 H 1.08999 * 109.58650 * 113.79949 * 29 9 7 50 50 H 1.08999 * 109.70740 * 353.44114 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2188 0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0741 2.5756 0.0000 7 6 5.5681 2.3783 0.0001 8 8 6.0318 1.2576 0.0011 9 7 6.3891 3.4472 0.0001 10 6 5.8424 4.8109 -0.0005 11 6 6.4577 5.5893 1.1668 12 6 7.9836 5.5237 1.0704 13 6 8.4405 4.0664 1.1675 14 1 8.0980 3.6393 2.1100 15 6 9.9680 4.0047 1.1041 16 1 10.3027 2.9702 1.1789 17 6 10.4635 4.6221 -0.2206 18 6 11.7469 5.3813 0.2086 19 6 11.3520 5.8875 1.6184 20 7 10.5462 4.7978 2.1986 21 6 10.3658 4.5636 3.5357 22 1 9.9166 3.6387 3.8661 23 6 10.7600 5.5150 4.4664 24 7 11.3079 6.6420 4.0638 25 14 10.5145 5.1952 6.2904 26 1 11.7169 4.5196 6.8408 27 1 10.3053 6.4853 6.9954 28 1 9.3259 4.3265 6.4850 29 6 7.8477 3.2708 -0.0003 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.9375 0.4568 0.0013 34 1 3.7809 3.1332 0.8895 35 1 3.7817 3.1321 -0.8904 36 1 6.0915 5.3040 -0.9401 37 1 4.7596 4.7706 0.1176 38 1 6.1346 6.6292 1.1210 39 1 6.1329 5.1485 2.1093 40 1 8.4239 6.0975 1.8859 41 1 8.3056 5.9425 0.1170 42 1 10.7007 3.8425 -0.9446 43 1 9.7237 5.3130 -0.6247 44 1 11.9505 6.2152 -0.4631 45 1 12.6010 4.7063 0.2609 46 1 10.7587 6.7987 1.5418 47 1 12.2417 6.0648 2.2225 48 1 11.5831 7.3070 4.7141 49 1 8.2600 3.6385 -0.9399 50 1 8.0902 2.2145 0.1166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120328793.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:17 Heat of formation + Delta-G solvation = -87.783467 kcal Electronic energy + Delta-G solvation = -30761.886675 eV Core-core repulsion = 26597.003407 eV Total energy + Delta-G solvation = -4164.883268 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.88245 -40.20644 -38.52435 -36.94847 -36.50088 -34.85732 -33.03339 -32.33949 -31.35187 -29.46069 -29.04157 -27.38459 -26.51844 -24.87342 -24.54120 -22.63868 -21.77044 -21.28340 -20.29380 -19.74718 -18.79658 -18.37144 -17.36862 -16.93974 -16.82021 -16.51516 -16.13426 -15.69205 -15.15215 -14.77692 -14.44388 -14.35088 -14.24625 -14.10152 -13.89995 -13.70845 -13.32654 -13.06797 -12.83238 -12.56721 -12.36438 -12.17375 -12.09885 -11.88822 -11.58286 -11.16660 -11.07785 -10.95733 -10.91181 -10.86209 -10.74960 -10.46555 -10.29749 -10.13845 -10.03277 -9.93085 -9.68104 -9.64261 -9.61794 -9.46236 -8.61197 -8.57279 -6.79680 -5.73805 -3.08636 1.77886 2.37361 2.53267 2.91594 3.38196 3.44673 3.45290 3.98873 4.17208 4.47925 4.80298 4.83038 4.90142 4.94705 4.99472 5.09252 5.15523 5.17787 5.20867 5.38799 5.42392 5.52089 5.68750 5.70273 5.74031 5.76295 5.80725 5.89929 5.92435 6.02992 6.05549 6.12366 6.24975 6.33311 6.41844 6.51900 6.58792 6.64437 6.74843 6.96397 6.99688 7.08498 7.12823 7.28261 7.56801 7.61647 7.82020 7.92907 8.02062 8.29160 9.20764 9.81862 10.49741 11.36970 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.002638 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.444201 B =10613.319859 C =11539.506986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.651 3.349 4 O -0.574 6.574 5 N -0.697 5.697 6 C 0.119 3.881 7 C 0.509 3.491 8 O -0.541 6.541 9 N -0.598 5.598 10 C 0.103 3.897 11 C -0.135 4.135 12 C -0.106 4.106 13 C -0.105 4.105 14 H 0.071 0.929 15 C 0.168 3.832 16 H 0.033 0.967 17 C -0.130 4.130 18 C -0.150 4.150 19 C 0.172 3.828 20 N -0.590 5.590 21 C -0.222 4.222 22 H 0.073 0.927 23 C -0.005 4.005 24 N -0.919 5.919 25 Si 0.907 3.093 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.115 3.885 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.419 0.581 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.022 0.978 47 H 0.075 0.925 48 H 0.252 0.748 49 H 0.069 0.931 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.289 -6.158 -11.962 20.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.283 6.283 3 C 0.403 3.597 4 O -0.464 6.464 5 N -0.359 5.359 6 C -0.007 4.007 7 C 0.296 3.704 8 O -0.419 6.419 9 N -0.330 5.330 10 C -0.020 4.020 11 C -0.173 4.173 12 C -0.143 4.143 13 C -0.126 4.126 14 H 0.089 0.911 15 C 0.059 3.941 16 H 0.051 0.949 17 C -0.168 4.168 18 C -0.189 4.189 19 C 0.047 3.953 20 N -0.314 5.314 21 C -0.350 4.350 22 H 0.091 0.909 23 C -0.202 4.202 24 N -0.566 5.566 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.007 4.007 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.258 0.742 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.040 0.960 47 H 0.093 0.907 48 H 0.062 0.938 49 H 0.087 0.913 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.367 -6.158 -11.741 20.296 hybrid contribution -0.125 -0.262 1.083 1.121 sum -15.492 -6.420 -10.658 19.870 Atomic orbital electron populations 1.23221 0.74160 1.03575 1.02818 1.86258 1.24328 1.30754 1.87006 1.17961 0.83052 0.82305 0.76358 1.91011 1.64680 1.34816 1.55854 1.44235 1.03269 1.10518 1.77920 1.21085 0.89823 0.84677 1.05152 1.20272 0.88334 0.84989 0.76851 1.90700 1.77050 1.23398 1.50728 1.48096 1.07484 1.05781 1.71667 1.21908 0.98193 0.81854 1.00045 1.21951 0.97908 0.99737 0.97739 1.21496 0.92800 0.97125 1.02921 1.21982 0.98225 0.95283 0.97127 0.91055 1.20867 0.89701 0.94998 0.88492 0.94896 1.22702 0.98091 0.99253 0.96780 1.23014 0.96663 0.99059 1.00123 1.21471 0.95967 0.89579 0.88272 1.44480 1.54610 1.31852 1.00475 1.18949 1.35276 1.00397 0.80409 0.90903 1.24806 1.01509 0.95954 0.97901 1.69930 1.46425 1.08070 1.32166 0.86200 0.77867 0.76849 0.85353 1.21675 1.21744 1.20747 1.21891 0.77077 1.02266 0.99447 0.91724 0.91778 0.87873 0.74226 0.87882 0.88033 0.90873 0.90149 0.90952 0.91581 0.89258 0.92592 0.92600 0.91475 0.92613 0.92505 0.96048 0.90688 0.93798 0.91326 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 10.56 101.05 1.07 1.46 16 2 O -0.37 -3.85 10.62 -40.34 -0.43 -4.28 16 3 C 0.65 7.86 8.75 54.05 0.47 8.33 16 4 O -0.57 -8.19 16.13 -19.28 -0.31 -8.50 16 5 N -0.70 -7.78 5.53 -66.47 -0.37 -8.15 16 6 C 0.12 1.23 4.50 -5.20 -0.02 1.21 16 7 C 0.51 6.50 7.77 -10.98 -0.09 6.42 16 8 O -0.54 -8.53 15.08 5.56 0.08 -8.44 16 9 N -0.60 -7.42 2.97 -172.74 -0.51 -7.94 16 10 C 0.10 1.04 6.34 -3.71 -0.02 1.01 16 11 C -0.14 -1.69 6.08 -26.61 -0.16 -1.85 16 12 C -0.11 -1.69 4.74 -26.69 -0.13 -1.81 16 13 C -0.10 -1.76 2.11 -90.47 -0.19 -1.95 16 14 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 15 C 0.17 3.19 2.95 -66.95 -0.20 2.99 16 16 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 17 C -0.13 -2.10 5.11 -24.89 -0.13 -2.23 16 18 C -0.15 -2.69 7.09 -24.58 -0.17 -2.87 16 19 C 0.17 3.92 5.47 -2.53 -0.01 3.91 16 20 N -0.59 -13.88 2.30 -162.58 -0.37 -14.25 16 21 C -0.22 -5.85 9.85 -15.06 -0.15 -5.99 16 22 H 0.07 1.92 7.83 -52.48 -0.41 1.50 16 23 C -0.01 -0.14 5.47 -17.43 -0.10 -0.24 16 24 N -0.92 -25.88 10.46 55.49 0.58 -25.30 16 25 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 C 0.12 1.63 5.57 -3.69 -0.02 1.61 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.42 4.64 7.55 -40.82 -0.31 4.33 16 34 H 0.10 1.01 7.69 -51.93 -0.40 0.61 16 35 H 0.10 0.90 7.94 -51.93 -0.41 0.49 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.63 5.93 -51.93 -0.31 0.33 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.83 7.54 -51.93 -0.39 1.44 16 41 H 0.06 0.83 6.10 -51.93 -0.32 0.52 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 1.01 5.52 -51.93 -0.29 0.72 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.02 0.52 8.12 -51.93 -0.42 0.10 16 47 H 0.07 1.96 6.70 -51.93 -0.35 1.61 16 48 H 0.25 6.96 8.31 -40.82 -0.34 6.63 16 49 H 0.07 0.89 6.95 -51.93 -0.36 0.52 16 50 H 0.09 1.38 7.01 -51.93 -0.36 1.01 16 LS Contribution 388.96 15.07 5.86 5.86 Total: -1.00 -31.77 388.96 -8.45 -40.21 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -8.11 Total: 4.09 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 0.15 Total: 10.00 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.68 Total: -55.63 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.66 Total: -21.22 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.77 -8.45 -40.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120328793.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.570 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds