Wall clock time and date at job start Sat Apr 11 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34637 * 116.99710 * 2 1 4 4 O 1.21505 * 120.00099 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00064 * 180.02562 * 3 2 1 6 6 C 1.46492 * 120.00290 * 179.72805 * 5 3 2 7 7 C 1.50703 * 109.47425 * 180.27695 * 6 5 3 8 8 O 1.21282 * 119.99682 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99998 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.63112 * 359.71611 * 9 7 6 11 11 C 1.53631 * 108.54310 * 126.37276 * 10 9 7 12 12 C 1.53036 * 109.24277 * 54.85195 * 11 10 9 13 13 C 1.53040 * 109.54305 * 298.51631 * 12 11 10 14 14 H 1.09004 * 109.52067 * 301.39980 * 13 12 11 15 15 C 1.52999 * 109.50028 * 181.31626 * 13 12 11 16 16 H 1.08994 * 109.87217 * 63.02943 * 15 13 12 17 17 C 1.54327 * 109.88139 * 302.01034 * 15 13 12 18 18 C 1.55155 * 102.94042 * 218.39075 * 17 15 13 19 19 C 1.54905 * 101.58336 * 35.50112 * 18 17 15 20 20 N 1.47018 * 109.88061 * 184.20334 * 15 13 12 21 21 C 1.36938 * 125.64923 * 298.33377 * 20 15 13 22 22 H 1.08001 * 120.00082 * 345.72270 * 21 20 15 23 23 C 1.38819 * 119.99901 * 165.72325 * 21 20 15 24 24 N 1.31614 * 120.00000 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99687 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 60.00060 * 25 23 21 27 27 H 1.48497 * 109.46928 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47254 * 299.99590 * 25 23 21 29 29 C 1.46929 * 120.62822 * 179.97438 * 9 7 6 30 30 H 1.09003 * 109.46490 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46772 * 299.99070 * 1 2 3 32 32 H 1.08992 * 109.47254 * 59.99737 * 1 2 3 33 33 H 0.97007 * 119.99937 * 0.02562 * 5 3 2 34 34 H 1.09000 * 109.47198 * 300.27656 * 6 5 3 35 35 H 1.09000 * 109.47213 * 60.27417 * 6 5 3 36 36 H 1.09000 * 109.59003 * 246.20312 * 10 9 7 37 37 H 1.08995 * 109.58952 * 6.63486 * 10 9 7 38 38 H 1.09006 * 109.63130 * 294.86855 * 11 10 9 39 39 H 1.08992 * 109.46335 * 174.74202 * 11 10 9 40 40 H 1.09000 * 109.46027 * 178.49135 * 12 11 10 41 41 H 1.09000 * 109.44923 * 58.52875 * 12 11 10 42 42 H 1.09001 * 110.71654 * 336.75199 * 17 15 13 43 43 H 1.09000 * 110.71675 * 100.02473 * 17 15 13 44 44 H 1.08995 * 111.00161 * 153.57523 * 18 17 15 45 45 H 1.09003 * 111.00228 * 277.42566 * 18 17 15 46 46 H 1.09006 * 110.36740 * 81.83176 * 19 18 17 47 47 H 1.08999 * 110.37135 * 204.04192 * 19 18 17 48 48 H 0.97001 * 119.99762 * 180.02562 * 24 23 21 49 49 H 1.08998 * 109.58967 * 353.37226 * 29 9 7 50 50 H 1.09004 * 109.58409 * 113.80238 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2703 -0.0005 6 6 4.0742 2.5755 -0.0065 7 6 5.5682 2.3781 -0.0127 8 8 6.0318 1.2574 -0.0117 9 7 6.3891 3.4470 -0.0184 10 6 5.8424 4.8107 -0.0248 11 6 6.4630 5.5914 1.1438 12 6 7.9884 5.5256 1.0408 13 6 8.4458 4.0684 1.1386 14 1 8.1074 3.6431 2.0835 15 6 9.9729 4.0066 1.0685 16 1 10.4045 4.5296 1.9218 17 6 10.4644 4.6503 -0.2452 18 6 11.6431 3.7317 -0.6625 19 6 11.1342 2.3435 -0.2005 20 7 10.4167 2.6050 1.0605 21 6 10.2000 1.6936 2.0593 22 1 9.8734 2.0271 3.0332 23 6 10.4002 0.3409 1.8199 24 7 10.7978 -0.0656 0.6329 25 14 10.1039 -0.9024 3.1822 26 1 8.6892 -0.8223 3.6265 27 1 10.3862 -2.2692 2.6748 28 1 11.0003 -0.6044 4.3280 29 6 7.8478 3.2705 -0.0239 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 3.9375 0.4567 -0.0013 34 1 3.7773 3.1305 -0.8965 35 1 3.7852 3.1346 0.8834 36 1 6.0906 5.2995 -0.9670 37 1 4.7598 4.7710 0.0945 38 1 6.1429 5.1520 2.0887 39 1 6.1398 6.6313 1.0982 40 1 8.4324 6.1009 1.8533 41 1 8.3060 5.9424 0.0851 42 1 9.6780 4.6354 -0.9998 43 1 10.8123 5.6682 -0.0692 44 1 11.7923 3.7537 -1.7419 45 1 12.5579 4.0071 -0.1375 46 1 10.4560 1.9219 -0.9425 47 1 11.9735 1.6696 -0.0286 48 1 10.9374 -1.0108 0.4656 49 1 8.0886 2.2143 0.0959 50 1 8.2565 3.6361 -0.9660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120328794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:20 Heat of formation + Delta-G solvation = -86.446249 kcal Electronic energy + Delta-G solvation = -31324.595863 eV Core-core repulsion = 27159.770581 eV Total energy + Delta-G solvation = -4164.825282 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.72219 -40.04091 -38.39101 -36.81572 -36.41455 -34.68322 -33.10845 -32.26842 -31.09425 -29.30769 -29.00490 -27.35054 -26.41156 -24.87053 -24.40110 -22.72105 -21.59895 -21.12176 -20.16458 -19.65007 -18.74762 -18.31580 -17.20554 -16.81739 -16.74712 -16.36244 -16.00311 -15.50407 -15.16322 -14.65689 -14.37789 -14.19589 -14.15515 -13.90158 -13.80480 -13.70527 -13.18224 -13.02258 -12.81186 -12.40110 -12.25233 -12.17941 -11.93538 -11.67274 -11.52341 -11.28567 -10.97776 -10.96399 -10.85766 -10.83532 -10.75964 -10.64234 -10.17599 -10.05978 -9.84257 -9.82618 -9.68391 -9.57485 -9.51199 -9.46179 -8.50464 -8.35683 -6.71444 -5.67336 -3.02371 1.93350 2.60846 2.71867 3.14686 3.45960 3.51350 3.51843 4.13767 4.37490 4.55474 4.79518 4.92937 4.94993 4.99992 5.07087 5.09717 5.13866 5.26923 5.33212 5.37630 5.47965 5.58191 5.61695 5.66587 5.74426 5.85226 5.91338 5.94139 5.96926 6.07704 6.16511 6.18462 6.21266 6.34504 6.38085 6.51292 6.60404 6.70785 6.82529 6.84640 6.99273 7.09225 7.24328 7.55907 7.59467 7.67748 7.86671 8.14352 8.26283 8.35414 9.27292 9.88824 10.56531 11.44613 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010485 B = 0.003660 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.847150 B = 7647.495187 C = 9517.200923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.369 6.369 3 C 0.652 3.348 4 O -0.578 6.578 5 N -0.696 5.696 6 C 0.120 3.880 7 C 0.503 3.497 8 O -0.519 6.519 9 N -0.604 5.604 10 C 0.103 3.897 11 C -0.133 4.133 12 C -0.116 4.116 13 C -0.105 4.105 14 H 0.070 0.930 15 C 0.168 3.832 16 H 0.034 0.966 17 C -0.128 4.128 18 C -0.151 4.151 19 C 0.173 3.827 20 N -0.592 5.592 21 C -0.230 4.230 22 H 0.071 0.929 23 C 0.003 3.997 24 N -0.914 5.914 25 Si 0.906 3.094 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.287 1.287 29 C 0.126 3.874 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.421 0.579 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.024 0.976 47 H 0.069 0.931 48 H 0.253 0.747 49 H 0.116 0.884 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.938 9.997 -3.603 17.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.283 6.283 3 C 0.404 3.596 4 O -0.468 6.468 5 N -0.358 5.358 6 C -0.006 4.006 7 C 0.288 3.712 8 O -0.395 6.395 9 N -0.338 5.338 10 C -0.021 4.021 11 C -0.172 4.172 12 C -0.154 4.154 13 C -0.127 4.127 14 H 0.088 0.912 15 C 0.060 3.940 16 H 0.052 0.948 17 C -0.166 4.166 18 C -0.190 4.190 19 C 0.048 3.952 20 N -0.316 5.316 21 C -0.358 4.358 22 H 0.088 0.912 23 C -0.194 4.194 24 N -0.560 5.560 25 Si 0.736 3.264 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.213 1.213 29 C 0.005 3.995 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.260 0.740 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.042 0.958 47 H 0.088 0.912 48 H 0.063 0.937 49 H 0.134 0.866 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.026 9.576 -3.582 17.357 hybrid contribution -0.193 -0.866 0.757 1.166 sum -14.219 8.710 -2.825 16.912 Atomic orbital electron populations 1.23203 0.74312 1.03524 1.02697 1.86273 1.24211 1.30791 1.86995 1.17950 0.83078 0.82247 0.76320 1.90986 1.64747 1.34822 1.56217 1.44283 1.03252 1.10716 1.77574 1.21080 0.90262 0.84569 1.04724 1.20259 0.88088 0.85318 0.77497 1.90811 1.76666 1.23106 1.48902 1.48145 1.08016 1.05137 1.72479 1.21890 0.98209 0.82624 0.99341 1.21984 0.97052 0.99701 0.98420 1.21626 0.94171 0.97752 1.01879 1.21953 0.98583 0.93221 0.98949 0.91182 1.20903 0.90238 0.87850 0.95034 0.94794 1.22661 0.98270 0.97844 0.97783 1.23027 0.97308 0.99401 0.99218 1.21416 0.95896 0.90820 0.87061 1.44474 1.62818 1.05764 1.18578 1.18815 1.40507 0.86181 0.90296 0.91162 1.24815 1.01333 0.96776 0.96513 1.69901 1.51355 1.14401 1.20305 0.86303 0.78066 0.80900 0.81089 1.21141 1.21646 1.21341 1.21800 0.75294 1.04794 0.97575 0.87923 0.91812 0.91835 0.74031 0.88287 0.88224 0.91077 0.90204 0.91565 0.91094 0.91999 0.91884 0.91753 0.92557 0.92608 0.92483 0.95801 0.91241 0.93710 0.86551 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 10.56 101.05 1.07 1.54 16 2 O -0.37 -4.52 10.62 -40.32 -0.43 -4.95 16 3 C 0.65 9.02 8.75 54.06 0.47 9.49 16 4 O -0.58 -8.96 16.13 -19.28 -0.31 -9.27 16 5 N -0.70 -9.43 5.53 -66.47 -0.37 -9.80 16 6 C 0.12 1.49 4.50 -5.20 -0.02 1.47 16 7 C 0.50 8.03 7.77 -10.99 -0.09 7.94 16 8 O -0.52 -10.78 15.08 5.56 0.08 -10.70 16 9 N -0.60 -8.94 2.97 -172.52 -0.51 -9.45 16 10 C 0.10 1.06 6.37 -3.48 -0.02 1.04 16 11 C -0.13 -1.38 6.10 -26.38 -0.16 -1.54 16 12 C -0.12 -1.45 4.87 -26.69 -0.13 -1.58 16 13 C -0.11 -1.80 2.10 -90.52 -0.19 -1.99 16 14 H 0.07 1.38 8.09 -51.93 -0.42 0.96 16 15 C 0.17 3.21 2.98 -66.95 -0.20 3.01 16 16 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 17 C -0.13 -2.07 5.18 -24.90 -0.13 -2.20 16 18 C -0.15 -2.75 7.08 -24.59 -0.17 -2.92 16 19 C 0.17 4.06 5.42 -2.53 -0.01 4.05 16 20 N -0.59 -14.26 2.34 -162.57 -0.38 -14.64 16 21 C -0.23 -6.24 9.89 -15.06 -0.15 -6.39 16 22 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 23 C 0.00 0.08 5.47 -17.43 -0.10 -0.01 16 24 N -0.91 -26.75 10.56 55.49 0.59 -26.16 16 25 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 26 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 C 0.13 2.27 5.27 -3.73 -0.02 2.25 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.42 5.97 7.55 -40.82 -0.31 5.67 16 34 H 0.10 1.05 7.93 -51.93 -0.41 0.64 16 35 H 0.10 1.11 7.70 -51.93 -0.40 0.71 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.73 6.97 -51.93 -0.36 0.37 16 42 H 0.06 0.99 5.44 -51.93 -0.28 0.71 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.02 0.61 8.07 -51.93 -0.42 0.19 16 47 H 0.07 1.85 6.91 -51.93 -0.36 1.49 16 48 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.12 2.79 6.59 -51.93 -0.34 2.44 16 50 H 0.06 1.06 6.05 -51.93 -0.31 0.74 16 LS Contribution 389.31 15.07 5.87 5.87 Total: -1.00 -33.45 389.31 -8.46 -41.90 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -8.12 Total: 5.38 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 0.15 Total: 14.17 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.67 Total: -60.06 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.66 Total: -24.91 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.45 -8.46 -41.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120328794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.541 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds