Wall clock time and date at job start Sat Apr 11 2020 05:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34637 * 116.99710 * 2 1 4 4 O 1.21505 * 120.00099 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00064 * 180.02562 * 3 2 1 6 6 C 1.46492 * 120.00290 * 179.72805 * 5 3 2 7 7 C 1.50703 * 109.47425 * 180.27695 * 6 5 3 8 8 O 1.21282 * 119.99682 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99998 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.63112 * 359.71611 * 9 7 6 11 11 C 1.53631 * 108.54310 * 126.37276 * 10 9 7 12 12 C 1.53036 * 109.24277 * 54.85195 * 11 10 9 13 13 C 1.53040 * 109.54305 * 298.51631 * 12 11 10 14 14 H 1.09004 * 109.52067 * 301.39980 * 13 12 11 15 15 C 1.52999 * 109.50028 * 181.31626 * 13 12 11 16 16 H 1.08994 * 109.87217 * 63.02943 * 15 13 12 17 17 C 1.54327 * 109.88139 * 302.01034 * 15 13 12 18 18 C 1.55155 * 102.94042 * 218.39075 * 17 15 13 19 19 C 1.54905 * 101.58336 * 35.50112 * 18 17 15 20 20 N 1.47018 * 109.88061 * 184.20334 * 15 13 12 21 21 C 1.36938 * 125.64923 * 298.33377 * 20 15 13 22 22 H 1.08001 * 120.00082 * 345.72270 * 21 20 15 23 23 C 1.38819 * 119.99901 * 165.72325 * 21 20 15 24 24 N 1.31614 * 120.00000 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99687 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47364 * 60.00060 * 25 23 21 27 27 H 1.48497 * 109.46928 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47254 * 299.99590 * 25 23 21 29 29 C 1.46929 * 120.62822 * 179.97438 * 9 7 6 30 30 H 1.09003 * 109.46490 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46772 * 299.99070 * 1 2 3 32 32 H 1.08992 * 109.47254 * 59.99737 * 1 2 3 33 33 H 0.97007 * 119.99937 * 0.02562 * 5 3 2 34 34 H 1.09000 * 109.47198 * 300.27656 * 6 5 3 35 35 H 1.09000 * 109.47213 * 60.27417 * 6 5 3 36 36 H 1.09000 * 109.59003 * 246.20312 * 10 9 7 37 37 H 1.08995 * 109.58952 * 6.63486 * 10 9 7 38 38 H 1.09006 * 109.63130 * 294.86855 * 11 10 9 39 39 H 1.08992 * 109.46335 * 174.74202 * 11 10 9 40 40 H 1.09000 * 109.46027 * 178.49135 * 12 11 10 41 41 H 1.09000 * 109.44923 * 58.52875 * 12 11 10 42 42 H 1.09001 * 110.71654 * 336.75199 * 17 15 13 43 43 H 1.09000 * 110.71675 * 100.02473 * 17 15 13 44 44 H 1.08995 * 111.00161 * 153.57523 * 18 17 15 45 45 H 1.09003 * 111.00228 * 277.42566 * 18 17 15 46 46 H 1.09006 * 110.36740 * 81.83176 * 19 18 17 47 47 H 1.08999 * 110.37135 * 204.04192 * 19 18 17 48 48 H 0.97001 * 119.99762 * 180.02562 * 24 23 21 49 49 H 1.08998 * 109.58967 * 353.37226 * 29 9 7 50 50 H 1.09004 * 109.58409 * 113.80238 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2703 -0.0005 6 6 4.0742 2.5755 -0.0065 7 6 5.5682 2.3781 -0.0127 8 8 6.0318 1.2574 -0.0117 9 7 6.3891 3.4470 -0.0184 10 6 5.8424 4.8107 -0.0248 11 6 6.4630 5.5914 1.1438 12 6 7.9884 5.5256 1.0408 13 6 8.4458 4.0684 1.1386 14 1 8.1074 3.6431 2.0835 15 6 9.9729 4.0066 1.0685 16 1 10.4045 4.5296 1.9218 17 6 10.4644 4.6503 -0.2452 18 6 11.6431 3.7317 -0.6625 19 6 11.1342 2.3435 -0.2005 20 7 10.4167 2.6050 1.0605 21 6 10.2000 1.6936 2.0593 22 1 9.8734 2.0271 3.0332 23 6 10.4002 0.3409 1.8199 24 7 10.7978 -0.0656 0.6329 25 14 10.1039 -0.9024 3.1822 26 1 8.6892 -0.8223 3.6265 27 1 10.3862 -2.2692 2.6748 28 1 11.0003 -0.6044 4.3280 29 6 7.8478 3.2705 -0.0239 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 3.9375 0.4567 -0.0013 34 1 3.7773 3.1305 -0.8965 35 1 3.7852 3.1346 0.8834 36 1 6.0906 5.2995 -0.9670 37 1 4.7598 4.7710 0.0945 38 1 6.1429 5.1520 2.0887 39 1 6.1398 6.6313 1.0982 40 1 8.4324 6.1009 1.8533 41 1 8.3060 5.9424 0.0851 42 1 9.6780 4.6354 -0.9998 43 1 10.8123 5.6682 -0.0692 44 1 11.7923 3.7537 -1.7419 45 1 12.5579 4.0071 -0.1375 46 1 10.4560 1.9219 -0.9425 47 1 11.9735 1.6696 -0.0286 48 1 10.9374 -1.0108 0.4656 49 1 8.0886 2.2143 0.0959 50 1 8.2565 3.6361 -0.9660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120328794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:19 Heat of formation + Delta-G solvation = -110.387015 kcal Electronic energy + Delta-G solvation = -31325.634013 eV Core-core repulsion = 27159.770581 eV Total energy + Delta-G solvation = -4165.863431 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.82089 -41.21939 -39.83793 -37.96180 -37.64596 -35.78768 -34.76188 -33.86810 -32.28917 -31.14218 -30.11422 -28.40954 -27.62481 -26.46831 -25.89737 -24.00354 -22.63833 -22.33515 -21.80096 -20.90228 -20.04875 -19.51194 -18.63038 -18.27155 -17.78381 -17.58917 -17.27234 -16.80120 -16.63670 -16.27739 -15.73834 -15.54160 -15.33701 -15.14491 -14.93841 -14.80734 -14.35736 -14.11184 -14.00908 -13.92752 -13.67479 -13.53994 -13.09822 -12.97849 -12.96231 -12.88109 -12.72547 -12.67107 -12.11449 -11.97290 -11.91071 -11.83670 -11.80970 -11.72348 -11.51000 -11.33605 -11.15919 -11.07713 -10.93267 -10.61975 -10.49984 -9.60053 -8.72508 -7.83844 -5.16916 0.98023 1.38538 1.43139 1.43708 1.47143 1.59897 2.00093 2.49060 3.17360 3.32185 3.36858 3.67252 3.92420 3.94978 4.11312 4.14488 4.16534 4.20138 4.22537 4.32830 4.33271 4.36854 4.37480 4.44380 4.58983 4.67127 4.69478 4.82623 4.87976 4.92177 4.96226 5.01514 5.08183 5.10376 5.22164 5.24642 5.25478 5.35265 5.41431 5.50081 5.54757 5.64143 5.66865 5.71347 5.84156 6.16257 6.29230 6.36388 7.03400 7.10792 7.15603 7.85794 8.51504 9.26942 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010485 B = 0.003660 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.847150 B = 7647.495187 C = 9517.200923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.379 6.379 3 C 0.653 3.347 4 O -0.595 6.595 5 N -0.701 5.701 6 C 0.131 3.869 7 C 0.496 3.504 8 O -0.581 6.581 9 N -0.602 5.602 10 C 0.095 3.905 11 C -0.129 4.129 12 C -0.109 4.109 13 C -0.094 4.094 14 H 0.032 0.968 15 C 0.156 3.844 16 H 0.034 0.966 17 C -0.112 4.112 18 C -0.138 4.138 19 C 0.178 3.822 20 N -0.610 5.610 21 C -0.225 4.225 22 H 0.068 0.932 23 C -0.056 4.056 24 N -0.942 5.942 25 Si 0.959 3.041 26 H -0.290 1.290 27 H -0.295 1.295 28 H -0.273 1.273 29 C 0.139 3.861 30 H 0.133 0.867 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.415 0.585 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.053 0.947 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.063 0.937 46 H -0.010 1.010 47 H 0.027 0.973 48 H 0.243 0.757 49 H 0.047 0.953 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.715 13.830 -3.920 21.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.292 6.292 3 C 0.406 3.594 4 O -0.486 6.486 5 N -0.363 5.363 6 C 0.005 3.995 7 C 0.284 3.716 8 O -0.461 6.461 9 N -0.334 5.334 10 C -0.026 4.026 11 C -0.167 4.167 12 C -0.147 4.147 13 C -0.116 4.116 14 H 0.050 0.950 15 C 0.049 3.951 16 H 0.052 0.948 17 C -0.149 4.149 18 C -0.176 4.176 19 C 0.053 3.947 20 N -0.334 5.334 21 C -0.355 4.355 22 H 0.085 0.915 23 C -0.250 4.250 24 N -0.590 5.590 25 Si 0.789 3.211 26 H -0.217 1.217 27 H -0.221 1.221 28 H -0.199 1.199 29 C 0.016 3.984 30 H 0.151 0.849 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.253 0.747 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.072 0.928 39 H 0.129 0.871 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.115 0.885 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.008 0.992 47 H 0.046 0.954 48 H 0.052 0.948 49 H 0.066 0.934 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.828 13.495 -3.882 21.159 hybrid contribution 0.324 -2.030 0.876 2.234 sum -15.504 11.466 -3.006 19.516 Atomic orbital electron populations 1.23558 0.72214 1.05720 1.02994 1.86287 1.26302 1.30016 1.86644 1.17975 0.82922 0.82507 0.75989 1.90963 1.65024 1.35413 1.57244 1.44398 1.03405 1.10979 1.77500 1.21141 0.87043 0.84521 1.06787 1.20947 0.89751 0.84617 0.76299 1.90790 1.77946 1.25618 1.51745 1.48243 1.06590 1.07154 1.71394 1.22332 0.99809 0.79739 1.00748 1.21995 0.95135 1.01895 0.97676 1.21592 0.96018 0.93576 1.03468 1.21754 0.96801 0.96552 0.96476 0.94968 1.21211 0.91771 0.85084 0.96987 0.94840 1.22639 0.97464 0.98915 0.95906 1.22891 0.98179 0.95839 1.00725 1.21168 0.93714 0.93465 0.86379 1.44678 1.63414 1.07403 1.17889 1.19060 1.38384 0.87032 0.91038 0.91459 1.25483 1.02555 0.98534 0.98396 1.70107 1.53351 1.13671 1.21899 0.85443 0.77612 0.78752 0.79309 1.21684 1.22138 1.19923 1.21345 0.77859 1.00829 0.98337 0.84877 0.91621 0.91438 0.74664 0.85588 0.86290 0.88538 0.87355 0.92849 0.87064 0.90947 0.89740 0.90457 0.88521 0.90144 0.91871 0.99240 0.95437 0.94799 0.93397 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.74 10.56 113.37 1.20 1.93 16 2 O -0.38 -8.98 10.62 -55.46 -0.59 -9.57 16 3 C 0.65 17.48 8.75 129.79 1.14 18.61 16 4 O -0.60 -17.45 16.13 19.82 0.32 -17.13 16 5 N -0.70 -18.80 5.53 -594.63 -3.29 -22.09 16 6 C 0.13 3.04 4.50 85.64 0.39 3.43 16 7 C 0.50 16.02 7.77 87.66 0.68 16.70 16 8 O -0.58 -25.78 15.08 -3.04 -0.05 -25.83 16 9 N -0.60 -17.28 2.97 -818.12 -2.43 -19.71 16 10 C 0.09 1.57 6.37 86.51 0.55 2.12 16 11 C -0.13 -2.10 6.10 30.82 0.19 -1.91 16 12 C -0.11 -2.29 4.87 30.62 0.15 -2.15 16 13 C -0.09 -3.17 2.10 -10.73 -0.02 -3.19 16 14 H 0.03 1.30 8.09 -2.39 -0.02 1.28 16 15 C 0.16 5.88 2.98 45.34 0.14 6.01 16 16 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 17 C -0.11 -3.28 5.18 31.78 0.16 -3.12 16 18 C -0.14 -4.83 7.08 31.98 0.23 -4.60 16 19 C 0.18 8.77 5.42 86.85 0.47 9.24 16 20 N -0.61 -30.58 2.34 -668.27 -1.56 -32.14 16 21 C -0.23 -12.89 9.89 84.03 0.83 -12.06 16 22 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 23 C -0.06 -3.33 5.47 84.86 0.46 -2.86 16 24 N -0.94 -59.01 10.56 21.65 0.23 -58.78 16 25 Si 0.96 48.99 29.55 68.60 2.03 51.02 16 26 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 27 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 28 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 29 C 0.14 5.08 5.27 86.35 0.45 5.54 16 30 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.42 12.26 7.55 -92.70 -0.70 11.56 16 34 H 0.13 2.29 7.93 -2.39 -0.02 2.27 16 35 H 0.12 2.34 7.70 -2.39 -0.02 2.32 16 36 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.11 1.24 5.93 -2.39 -0.01 1.22 16 38 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 1.49 6.97 -2.39 -0.02 1.47 16 42 H 0.08 2.10 5.44 -2.39 -0.01 2.08 16 43 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 46 H -0.01 -0.57 8.07 -2.38 -0.02 -0.59 16 47 H 0.03 1.55 6.91 -2.39 -0.02 1.54 16 48 H 0.24 15.05 8.31 -92.71 -0.77 14.28 16 49 H 0.05 2.46 6.59 -2.39 -0.02 2.44 16 50 H 0.07 2.39 6.05 -2.38 -0.01 2.37 16 Total: -1.00 -81.92 389.31 1.92 -80.00 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.25 Total: 20.54 kcal Atomic # 6 Polarization: 26.68 SS G_CDS: 7.01 Total: 33.69 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -7.05 Total: -132.72 kcal Atomic # 8 Polarization: -52.21 SS G_CDS: -0.31 Total: -52.53 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.03 Total: 51.02 kcal Total: -81.92 1.92 -80.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120328794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.385 kcal (2) G-P(sol) polarization free energy of solvation -81.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds